Team History by Year | Top | Playoff Teams | Winning Record |
| Year | Team | League | Division | Org | GP | W | L | Pct | GBL | RF | RA | Diff | Rank | Manager | Playoffs | Attendance | Stadium | Links | |
| 2018 | Batavia Muckdogs | New York-Penn League | Pinckney | MIA | 0 | 0 | 0 | -- | -- | 0 | 0 | 0 | - | Mike Jacobs | - | 0 | -- | - | Stats -- Roster |
| 2017 | Batavia Muckdogs | New York-Penn League | Pinckney | MIA | 75 | 30 | 45 | .400 | 15.0 | 298 | 370 | -72 | 6 | Mike Jacobs | - | 27,389 | -- | Dwyer Stadium | Stats -- Roster |
| 2016 | Batavia Muckdogs | New York-Penn League | Pinckney | MIA | 75 | 22 | 53 | .293 | 27.5 | 264 | 436 | -172 | 6 | Angel Espada | - | 30,007 | -- | Dwyer Stadium | Stats -- Roster |
| 2015 | Batavia Muckdogs | New York-Penn League | Pinckney | MIA | 75 | 31 | 44 | .413 | 14.5 | 295 | 381 | -86 | 5 | Angel Espada | - | 32,221 | -- | Dwyer Stadium | Stats -- Roster |
| 2014 | Batavia Muckdogs | New York-Penn League | Pinckney | MIA | 76 | 34 | 42 | .447 | 14.0 | 294 | 347 | -53 | 4 | Angel Espada | - | 33,376 | -- | Dwyer Stadium | Stats -- Roster |
| 2013 | Batavia Muckdogs | New York-Penn League | Pinckney | MIA | 75 | 39 | 36 | .520 | 9.0 | 296 | 313 | -17 | 3 | Angel Espada | - | 33,909 | -- | Dwyer Stadium | Stats -- Roster |
| 2012 | Batavia Muckdogs | New York-Penn League | Pinckney | SLN | 76 | 44 | 32 | .579 | 2.0 | 342 | 274 | 68 | 2 | Dann Bilardello | - | 33,443 | -- | Dwyer Stadium | Stats -- Roster |
| 2011 | Batavia Muckdogs | New York-Penn League | Pinckney | SLN | 75 | 37 | 38 | .493 | 8.0 | 336 | 336 | 0 | 4 | Dann Bilardello | - | 37,029 | -- | Dwyer Stadium | Stats -- Roster |
| 2010 | Batavia Muckdogs | New York-Penn League | Pinckney | SLN | 74 | 45 | 29 | .608 | -- | 410 | 332 | 78 | 1 | Dann Bilardello | Lost in Semi-Finals | 36,601 | -- | Dwyer Stadium | Stats -- Roster |
| 2009 | Batavia Muckdogs | New York-Penn League | Pinckney | SLN | 76 | 37 | 39 | .487 | 12.0 | 333 | 327 | 6 | 4 | Mark DeJohn | - | 35,620 | -- | Dwyer Stadium | Stats -- Roster |
| 2008 | Batavia Muckdogs | New York-Penn League | Pinckney | SLN | 74 | 46 | 28 | .622 | -- | 359 | 292 | 67 | 1 | Mark DeJohn | League Champions | 43,167 | -- | Dwyer Stadium | Stats -- Roster |
| 2007 | Batavia Muckdogs | New York-Penn League | Pinckney | SLN | 74 | 31 | 43 | .419 | 15.0 | 288 | 324 | -36 | 5 | Mark DeJohn | - | 43,327 | -- | Dwyer Stadium | Stats -- Roster |
| 2006 | Batavia Muckdogs | New York-Penn League | Pinckney | PHI | 73 | 35 | 38 | .479 | 6.5 | 289 | 254 | 35 | 4 | Steve Roadcap | - | 39,094 | -- | Dwyer Stadium | Stats -- Roster |
| 2005 | Batavia Muckdogs | New York-Penn League | Pinckney | PHI | 75 | 36 | 39 | .480 | 9.0 | 383 | 370 | 13 | - | Manny Amador | - | 40,557 | -- | Dwyer Stadium | Stats -- Roster |
| 2004 | Batavia Muckdogs | New York-Penn League | Pinckney | PHI | 74 | 28 | 46 | .378 | 22.0 | 280 | 392 | -112 | 4 | Luis Melendez | - | 38,086 | -- | Dwyer Stadium | Stats -- Roster |
| 2003 | Batavia Muckdogs | New York-Penn League | Pinckney | PHI | 75 | 30 | 45 | .400 | 26.5 | 266 | 333 | -67 | 3 | Luis Melendez | - | 42,801 | -- | Dwyer Stadium | Stats -- Roster |
| 2002 | Batavia Muckdogs | New York-Penn League | Pinckney | PHI | 76 | 34 | 42 | .447 | 13.0 | 290 | 310 | -20 | 3 | Ronnie Ortegon | - | 43,494 | -- | Dwyer Stadium | Stats -- Roster |
| 2001 | Batavia Muckdogs | New York-Penn League | McNamara | PHI | 76 | 37 | 39 | .487 | 12.0 | 323 | 341 | -18 | 3 | Frank Klebe | - | 43,257 | -- | Dwyer Stadium | Stats -- Roster |
| 2000 | Batavia Muckdogs | New York-Penn League | McNamara | PHI | 76 | 39 | 37 | .513 | 9.0 | 354 | 356 | -2 | 2 | Frank Klebe | Lost in Semi-Finals | 38,663 | -- | Dwyer Stadium | Stats -- Roster |
| 1999 | Batavia Muckdogs | New York-Penn League | Pinckney | PHI | 76 | 42 | 34 | .553 | 1.0 | 379 | 341 | 38 | 2 | Greg Legg | Lost in Semi-Finals | 39,357 | -- | Dwyer Stadium | Stats -- Roster |
| 1998 | Batavia Muckdogs | New York-Penn League | Stedler | PHI | 76 | 43 | 33 | .566 | -- | 387 | 340 | 47 | 1 | Frank Klebe | Lost in Semi-Finals | 42,908 | -- | Dwyer Stadium | Stats -- Roster |
| 1997 | Batavia Clippers | New York-Penn League | Stedler | PHI | 74 | 47 | 27 | .635 | 2.0 | 414 | 296 | 118 | 2 | Greg Legg | Lost in Finals | 41,192 | -- | Dwyer Stadium | Stats -- Roster |
| 1996 | Batavia Clippers | New York-Penn League | Stedler | PHI | 75 | 42 | 33 | .560 | 1.5 | 348 | 304 | 44 | 2 | Floyd Rayford | - | 39,025 | -- | Dwyer Stadium | Stats -- Roster |
| 1995 | Batavia Clippers | New York-Penn League | Pinckney | PHI | 75 | 41 | 34 | .547 | -- | 389 | 369 | 20 | 1 | Al LeBoeuf | Lost in Semi-Finals | 38,313 | -- | Dwyer Stadium | Stats -- Roster |
| 1994 | Batavia Clippers | New York-Penn League | Stedler | PHI | 74 | 40 | 34 | .541 | 2.0 | 340 | 302 | 38 | 2 | Al LeBoeuf | - | 40,757 | -- | Dwyer Stadium | Stats -- Roster |
| 1993 | Batavia Clippers | New York-Penn League | Stedler | PHI | 77 | 38 | 39 | .494 | 10.5 | 296 | 319 | -23 | 3 | Al LeBoeuf | - | 41,539 | -- | Dwyer Stadium | Stats -- Roster |
| 1992 | Batavia Clippers | New York-Penn League | Pinckney | PHI | 70 | 36 | 34 | .514 | 2.5 | 338 | 326 | 12 | 2 | Ramon Aviles | - | 39,385 | -- | Dwyer Stadium | Stats -- Roster |
| 1991 | Batavia Clippers | New York-Penn League | McNamara-West | PHI | 78 | 38 | 40 | .487 | 9.5 | 352 | 369 | -17 | 3 | Ramon Aviles | - | 43,247 | -- | Dwyer Stadium | Stats -- Roster |
| 1990 | Batavia Clippers | New York-Penn League | Western | PHI | 76 | 41 | 35 | .539 | 9.5 | 369 | 335 | 34 | 2 | Dave Cash Ramon Aviles Tony Scott | - | 39,257 | -- | Dwyer Stadium | Stats -- Roster |
| 1989 | Batavia Clippers | New York-Penn League | Western | PHI | 76 | 37 | 39 | .487 | 7.0 | 305 | 299 | 6 | 3 | Don McCormack | - | 38,704 | -- | Dwyer Stadium | Stats -- Roster |
| 1988 | Batavia Clippers | New York-Penn League | Western | PHI | 75 | 31 | 44 | .413 | 15.5 | 314 | 394 | -80 | 4 | Don McCormack | - | 31,230 | -- | Dwyer Stadium | Stats -- Roster |
| 1987 | Batavia Trojans | New York-Penn League | Western | - | 77 | 23 | 54 | .299 | 25.5 | 307 | 398 | -91 | 6 | Art Mazmanian | - | 25,339 | -- | Dwyer Stadium | Stats -- Roster |
| 1986 | Batavia Trojans | New York-Penn League | Wrigley | CLE | 75 | 30 | 45 | .400 | 17.5 | 300 | 297 | 3 | 3 | Tom Chandler | - | 34,765 | -- | Dwyer Stadium | Stats -- Roster |
| 1985 | Batavia Trojans | New York-Penn League | Southern | CLE | 78 | 33 | 45 | .423 | 12.0 | 359 | 385 | -26 | 4 | Eddie Bane | - | 35,581 | -- | Dwyer Stadium | Stats -- Roster |
| 1984 | Batavia Trojans | New York-Penn League | Western | CLE | 76 | 41 | 35 | .539 | 6.0 | 398 | 475 | -77 | 3 | Eddie Bane | - | 32,958 | -- | Dwyer Stadium | Stats -- Roster |
| 1983 | Batavia Trojans | New York-Penn League | Western | CLE | 75 | 32 | 43 | .427 | 16.5 | 369 | 419 | -50 | 5 | Brian Doyle | - | 27,766 | -- | Dwyer Stadium | Stats -- Roster |
| 1982 | Batavia Trojans | New York-Penn League | Western | CLE | 73 | 33 | 40 | .452 | 7.5 | 331 | 434 | -103 | 5 | Dave Oliver | - | 26,378 | -- | Dwyer Stadium | Stats -- Roster |
| 1981 | Batavia Trojans | New York-Penn League | Western | CLE | 75 | 16 | 59 | .213 | 32.5 | 282 | 539 | -257 | 4 | Dave Oliver | - | 24,841 | -- | Dwyer Stadium | Stats -- Roster |
| 1980 | Batavia Trojans | New York-Penn League | Western | CLE | 73 | 31 | 42 | .425 | 16.5 | 363 | 416 | -53 | 2 | Rick Colzie | - | 29,670 | -- | Dwyer Stadium | Stats -- Roster |
| 1979 | Batavia Trojans | New York-Penn League | Wrigley | CLE | 71 | 37 | 34 | .521 | 14.0 | 377 | 368 | 9 | 3 | Tom Trebelhorn | - | 41,376 | -- | Dwyer Stadium | Stats -- Roster |
| 1978 | Batavia Trojans | New York-Penn League | Wrigley | CLE | 72 | 34 | 38 | .472 | 17.5 | 420 | 506 | -86 | 3 | Luis Isaac | - | 39,359 | -- | Dwyer Stadium | Stats -- Roster |
| 1977 | Batavia Trojans | New York-Penn League | West | CLE | 70 | 42 | 28 | .600 | -- | 430 | 340 | 90 | 1 | Gene Dusan | - | 0 | -- | - | Stats -- Roster |
