| East | W | L | Pct | GB |
| Tampa Bay | 97 | 65 | .599 | -- |
| Boston | 95 | 67 | .586 | 2.0 |
| NY Yankees | 89 | 73 | .549 | 8.0 |
| Toronto | 86 | 76 | .531 | 11.0 |
| Baltimore | 68 | 93 | .422 | 28.5 |
| Phase | Rnd | Ovl | Player | Pos | Current Status |
| June-Reg | 1 | 1 | Tim Beckham | SS | TB Minors [AAA] 40m |
| June-Reg | 2 | 47 | Kyle Lobstein | P | DET Minors [AA] |
| June-Reg | 3 | 78 | Jake Jefferies | C | MIA Minors [AAA] (DL-7) |
| June-Reg | 4 | 113 | Ty Morrison | OF | TB Minors [AA] (DL-7) |
| June-Reg | 5 | 143 | Mike Sheridan | 1B | TB Minors [AA] |
| June-Reg | 6 | 173 | Shane Dyer | P | DET Minors |
| June-Reg | 7 | 203 | Jason Corder | OF | Retired |
| June-Reg | 8 | 233 | Anthony Scelfo | 2B | Inactive |
| June-Reg | 9 | 263 | Shawn Smith | P | Inactive |
| June-Reg | 10 | 293 | Matt Hall | 2B | Inactive |
| June-Reg | 11 | 323 | Bradley Furdal | P | Inactive |
| June-Reg | 12 | 353 | Brian Bryles | P | Inactive |
| June-Reg | 13 | 383 | Jason McEachern | P | TB Minors |
| June-Reg | 14 | 413 | Mike McKenna | OF | Retired |
| June-Reg | 15 | 443 | Brandon Meredith | 1B | HOU Minors [A+] |
| June-Reg | 16 | 473 | Matt Gorgen | P | ARI Minors [AAA] |
| June-Reg | 17 | 503 | Jeremy Beckham | 2B | Retired |
| June-Reg | 18 | 533 | David Genao | C | Retired |
| June-Reg | 19 | 563 | Trevor Shull | P | TB Minors |
| June-Reg | 20 | 593 | Jason Tweedy | 2B | Retired |
| June-Reg | 21 | 623 | Ryan Carpenter | P | TB Minors [A+] |
| June-Reg | 22 | 653 | Jason Appel | OF | Retired |
| June-Reg | 23 | 683 | Neil Schenk | P | TB Minors [AA] |
| June-Reg | 24 | 713 | Marquis Fleming | P | TB Minors [AA] |
| June-Reg | 25 | 743 | Josh Satow | P | Inactive |
| June-Reg | 26 | 773 | Michael Jarman | P | Inactive |
| June-Reg | 27 | 803 | Luis Marchena | SS | Inactive |
| June-Reg | 28 | 833 | Tom Rafferty | P | Inactive |
| June-Reg | 29 | 863 | Brandon Magee | OF | BOS Minors |
| June-Reg | 30 | 893 | Ryan Turner | 2B | Inactive |
| June-Reg | 31 | 923 | Greg Williams | P | TEX Minors [A] |
| June-Reg | 32 | 953 | Kyle Gaedele | OF | SD Minors [A+] |
| June-Reg | 33 | 983 | Kyle Hunter | P | SEA Minors [AA] |
| June-Reg | 34 | 1013 | Matt Long | P | Retired |
| June-Reg | 35 | 1043 | Jamie Bagley | P | Inactive |
| June-Reg | 36 | 1073 | Jordan Leyland | 1B | TOR Minors [Rk] |
| June-Reg | 37 | 1103 | Kramer Champlin | P | TOR Minors [A] |
| June-Reg | 38 | 1133 | Anthony Haase | P | Inactive |
| June-Reg | 39 | 1163 | Andrew Gans | OF | Inactive |
| June-Reg | 40 | 1193 | Sam Gaviglio | P | STL Minors [A+] |
| June-Reg | 41 | 1223 | Brett Parsons | OF | Inactive |
| June-Reg | 42 | 1253 | Tim Clubb | P | Inactive |
| June-Reg | 43 | 1283 | Robert Ross | P | Inactive |
| June-Reg | 44 | 1313 | Philip Pohl | C | OAK Minors [A+] |
| June-Reg | 45 | 1342 | Royce Bolinger | OF | TEX Minors [A+] |
| June-Reg | 46 | 1370 | Jeffrey Lease | P | Inactive |
| June-Reg | 47 | 1397 | Chris Matulis | P | College |
| June-Reg | 48 | 1424 | Lath Guyer | P | Inactive |
| June-Reg | 49 | 1451 | Kash Kalkowski | P | College |
| June-Reg | 50 | 1478 | Kyle Peterson | C | Inactive |