| East | W | L | Pct | GB |
| Atlanta | 103 | 59 | .636 | -- |
| NY Mets | 97 | 66 | .595 | 6.5 |
| Philadelphia | 77 | 85 | .475 | 26.0 |
| Montreal | 68 | 94 | .420 | 35.0 |
| Florida | 64 | 98 | .395 | 39.0 |
| Phase | Rnd | Ovl | Player | Pos | Current Status |
| June-Reg | 2 | 73 | Neal Musser | P | Inactive |
| June-Reg | 2 | 84 | Jake Joseph | P | Retired |
| June-Reg | 3 | 106 | Jeremy Griffiths | P | Retired |
| June-Reg | 4 | 136 | Angel Pagan | OF | SF 40m |
| June-Reg | 5 | 166 | Nick James | P | Retired |
| June-Reg | 6 | 196 | Tyler Parker | C-1B | Retired |
| June-Reg | 7 | 226 | Rodney Nye | 3B | Retired |
| June-Reg | 8 | 256 | Forrest Lawson | OF | Retired |
| June-Reg | 9 | 286 | Wayne Lydon | OF | Inactive |
| June-Reg | 10 | 316 | Prentice Redman | OF | Inactive |
| June-Reg | 11 | 346 | Joey Cole | P | Retired |
| June-Reg | 12 | 376 | Paul Viole | P | Retired |
| June-Reg | 13 | 406 | Robert McIntyre | SS | Retired |
| June-Reg | 14 | 436 | John Hendricks | P | Retired |
| June-Reg | 15 | 466 | Steven Elzy | C | Retired |
| June-Reg | 16 | 496 | Gene Desalme | P | Retired |
| June-Reg | 17 | 526 | Kevin Ciarrachi | C | Retired |
| June-Reg | 18 | 556 | Matt Smith | P | Retired |
| June-Reg | 19 | 586 | Jose Pabon | 2B | Retired |
| June-Reg | 20 | 616 | Rob Henkel | P | Retired |
| June-Reg | 21 | 646 | Adam Manley | 1B | Retired |
| June-Reg | 22 | 676 | Kyle Woods | LF | Inactive |
| June-Reg | 23 | 706 | Wilbur Jackson | SS | Retired |
| June-Reg | 24 | 736 | Dustin Brisson | DH | Retired |
| June-Reg | 25 | 766 | Matt Dyer | C | Retired |
| June-Reg | 26 | 796 | Wesley Wright | P | Inactive |
| June-Reg | 27 | 826 | Samuel Lopez | SS | Retired |
| June-Reg | 28 | 856 | Steve Bennett | P | Assistant Coach - Gonzaga University (2013) |
| June-Reg | 29 | 886 | Bryan Loeb | C | Retired |
| June-Reg | 30 | 916 | Matthew Mize | 2B | Retired |
| June-Reg | 31 | 946 | Orlando Roman | P | Inactive |
| June-Reg | 32 | 976 | Brian Williamson | P | Retired |
| June-Reg | 33 | 1006 | Lionel Rogers | P | Retired |
| June-Reg | 34 | 1036 | Patrick O'Sullivan | OF | Hitting Coach - Rockford (2012) |
| June-Reg | 35 | 1066 | Jamie Gonzales | P | Retired |
| June-Reg | 36 | 1096 | Myles Ledbetter | P | Inactive |
| June-Reg | 38 | 1156 | Mike Jacobs | C | Free Agent |
| June-Reg | 39 | 1186 | Carrington Fisk | P | Inactive |
| June-Reg | 40 | 1216 | Cory Harris | OF | Retired |
| June-Reg | 41 | 1245 | Philip Perry | Retired | |
| June-Reg | 42 | 1273 | Darius Shelby | CF | Inactive |
| June-Reg | 43 | 1300 | Ryan Hay | Retired | |
| June-Reg | 44 | 1327 | Brian Kelly | Retired | |
| June-Reg | 45 | 1352 | Ross Peeples | P | Inactive |
| June-Reg | 46 | 1376 | Aaron Gureckis | CF | Inactive |
| June-Reg | 47 | 1400 | Andre Decordova | Retired | |
| June-Reg | 48 | 1424 | Vincent White | LF | Inactive |
| June-Reg | 49 | 1447 | Eric Bernier | CF | Inactive |
| June-Reg | 50 | 1468 | John Hoyos | P | Inactive |