| West | W | L | Pct | GB |
| LA Dodgers | 58 | 56 | .509 | -- |
| SF Giants | 55 | 60 | .478 | 3.5 |
| Colorado | 53 | 64 | .453 | 6.5 |
| San Diego | 47 | 70 | .402 | 12.5 |
| Phase | Rnd | Ovl | Player | Pos | Current Status |
| June-Reg | 1 | 3 | Dustin Hermanson | P | Retired |
| June-Reg | 2 | 37 | Troy Glaus | 3B | Inactive |
| June-Reg | 3 | 66 | Heath Murray | P | Retired |
| June-Reg | 4 | 94 | Gordon Amerson | OF | Retired |
| June-Reg | 5 | 122 | Eric Newman | P | Assistant Coach - University of Nebraska (2011) |
| June-Reg | 6 | 150 | Trajan Langdon | 3B-P | Retired |
| June-Reg | 7 | 178 | Shane Dennis | P | Retired |
| June-Reg | 8 | 206 | David Ullan | C | Retired |
| June-Reg | 9 | 234 | Jake Remington | P | Retired |
| June-Reg | 10 | 262 | Greg LaRocca | SS | Inactive |
| June-Reg | 11 | 290 | Keith Davis | P | Retired |
| June-Reg | 12 | 318 | Rod Jackson | SS | Retired |
| June-Reg | 13 | 346 | Shawn Knight | SS | Retired |
| June-Reg | 14 | 374 | Bubba Dixon | p | Retired |
| June-Reg | 15 | 402 | James Johnson | OF | Retired |
| June-Reg | 16 | 430 | Pete Paciorek | 1B | Retired |
| June-Reg | 17 | 458 | Jon Morris | C | Retired |
| June-Reg | 18 | 486 | Kurt Blackmon | p | Retired |
| June-Reg | 19 | 514 | Matt Hyers | SS | Retired |
| June-Reg | 20 | 542 | Rodney Schroeder | p | Retired |
| June-Reg | 21 | 570 | Jason Tyrus | OF | Retired |
| June-Reg | 22 | 598 | Josh Davis | C | Retired |
| June-Reg | 23 | 626 | Luis Torres | p | Retired |
| June-Reg | 24 | 654 | Erik Martinez | SS | Retired |
| June-Reg | 25 | 682 | Lee Biddle | p | Inactive |
| June-Reg | 26 | 710 | Rusty Sarnes | p | Inactive |
| June-Reg | 27 | 738 | Darren Grass | C | Retired |
| June-Reg | 28 | 766 | Tim Jorgensen | SS | Retired |
| June-Reg | 29 | 794 | Alan Goudy | OF | Inactive |
| June-Reg | 30 | 822 | Jesse Coronado | p | Inactive |
| June-Reg | 31 | 850 | A.J. Jenkins | p | Retired |
| June-Reg | 32 | 878 | Dwain Koscielniak | 3B | Retired |
| June-Reg | 33 | 906 | Mark Merila | 2B | Bullpen Catcher - San Diego Padres (2012) |
| June-Reg | 34 | 934 | Cruz Molina | p | Inactive |
| June-Reg | 35 | 962 | Kenya Hunt | 1B | Retired |
| June-Reg | 36 | 990 | Aaron Bass | p | Retired |
| June-Reg | 37 | 1018 | Jeff Conway | Of | Retired |
| June-Reg | 38 | 1046 | Jarman Leach | p | Retired |
| June-Reg | 39 | 1074 | Rodney Lindsey | Of | Retired |
| June-Reg | 40 | 1101 | David Robinson | of | Inactive |
| June-Reg | 41 | 1127 | Chris Clark | p | Retired |
| June-Reg | 42 | 1153 | Daryl Rutherford | 2B-of | Retired |
| June-Reg | 43 | 1179 | Tim Harrington | 1B | Inactive |
| June-Reg | 44 | 1205 | Mark Barrett | p | Retired |
| June-Reg | 45 | 1231 | Eliezer Rosario | SS | Retired |
| June-Reg | 46 | 1256 | Oscar Hirschkorn | p | Inactive |
| June-Reg | 47 | 1280 | Antonio Fernandez | 3B | Retired |
| June-Reg | 48 | 1303 | Adam Sisk | p | Inactive |
| June-Reg | 49 | 1323 | Jason Michaels | of | Free Agent |
| June-Reg | 50 | 1343 | Steve Chavez | 3B | Retired |
| June-Reg | 51 | 1363 | Kevin Workman | SS | Retired |
| June-Reg | 52 | 1383 | Mark Desabrais | p | Retired |
| June-Reg | 53 | 1403 | Kevin Durham | p | Inactive |
| June-Reg | 54 | 1422 | Derek Mickelson | p | Inactive |