| East | W | L | Pct | GB |
| Montreal | 74 | 40 | .649 | -- |
| Atlanta | 68 | 46 | .596 | 6.0 |
| NY Mets | 55 | 58 | .487 | 18.5 |
| Philadelphia | 54 | 61 | .470 | 20.5 |
| Florida | 51 | 64 | .443 | 23.5 |
| Phase | Rnd | Ovl | Player | Pos | Current Status |
| June-Reg | 1 | 5 | Josh Booty | SS | Retired |
| June-Reg | 2 | 39 | Victor Rodriguez | SS | Inactive |
| June-Reg | 3 | 68 | Todd Cady | C | Retired |
| June-Reg | 3 | 70 | Brian Meadows | P | Retired |
| June-Reg | 4 | 96 | Chad Miles | P | Retired |
| June-Reg | 5 | 124 | Jason Garrelts | P | Retired |
| June-Reg | 6 | 152 | Mike Parisi | P | Retired |
| June-Reg | 7 | 180 | Ryan Jackson | OF | Minor League hitting coordinator - Cincinnati Reds (2013) |
| June-Reg | 8 | 208 | Hector Kuilan | C | Retired |
| June-Reg | 9 | 236 | Hayward Cook | OF | Retired |
| June-Reg | 10 | 264 | Abdul Cole | OF | Retired |
| June-Reg | 11 | 292 | Jon Farmer | P | Retired |
| June-Reg | 12 | 320 | Rob Stanifer | p | Retired |
| June-Reg | 14 | 376 | Rodney Getz | p | Retired |
| June-Reg | 15 | 404 | Allan Hebbert | p | Retired |
| June-Reg | 16 | 432 | Seth Etherton | p | Inactive |
| June-Reg | 17 | 460 | Kenyon West | p | Retired |
| June-Reg | 18 | 488 | Jeremy Ross | p | Retired |
| June-Reg | 20 | 544 | Mark Gugino | OF | Retired |
| June-Reg | 21 | 572 | Brian Shackelford | p | Retired |
| June-Reg | 23 | 628 | Lionel Hastings | 2B | Retired |
| June-Reg | 24 | 656 | Wally Maynard | p | Retired |
| June-Reg | 25 | 684 | Dan Vardijan | p | Retired |
| June-Reg | 26 | 712 | Michael Reyes | OF | Retired |
| June-Reg | 27 | 740 | Sommer McCartney | C | Retired |
| June-Reg | 28 | 768 | Tim McClaskey | p | Retired |
| June-Reg | 29 | 796 | Mark Hale | p | Retired |
| June-Reg | 30 | 824 | Shawn O'Dell | 1B | Retired |
| June-Reg | 31 | 852 | Kirk Pierce | OF | Retired |
| June-Reg | 32 | 880 | Terry Bishop | p | Retired |
| June-Reg | 33 | 908 | Derrick Johnson | Of | Retired |
| June-Reg | 34 | 936 | Walt White | SS | Retired |
| June-Reg | 35 | 964 | Chad Mead | p | Retired |
| June-Reg | 36 | 992 | A.J. Samadani | p | Retired |
| June-Reg | 37 | 1020 | Derek Santiago | p | Retired |
| June-Reg | 38 | 1048 | Mark Greenlee | p | Inactive |
| June-Reg | 39 | 1076 | Jay Gospodarek | p | Retired |
| June-Reg | 40 | 1103 | Jeremy Blaylock | p | Inactive |
| June-Reg | 41 | 1129 | Quincy Foster | of | Retired |
| June-Reg | 42 | 1155 | Heath Askew | p | Inactive |
| June-Reg | 43 | 1181 | Darren Mills | 3B | Inactive |
| June-Reg | 44 | 1207 | Aaron Carnes | p | Retired |
| June-Reg | 45 | 1233 | Mike Evans | p | Retired |
| June-Reg | 46 | 1258 | Theron Truitt | of | Retired |
| June-Reg | 47 | 1282 | Randy Niles | p | Retired |
| June-Reg | 48 | 1305 | Randy Shagena | p | Retired |
| June-Reg | 49 | 1325 | Joel Holland | jp | Retired |
| June-Reg | 50 | 1345 | Gaylon Dixon | p | Inactive |
| June-Reg | 51 | 1365 | Sonny Cortez | of | Retired |
| June-Reg | 52 | 1385 | Scott DeWitt | p | Retired |
| June-Reg | 54 | 1424 | Shane Phillips | of | Inactive |
| June-Reg | 55 | 1441 | Chris Gorrell | p | Retired |
| June-Reg | 56 | 1457 | Justin Fenus | p | Retired |
| June-Reg | 57 | 1473 | Chris Windsor | p | Inactive |
| June-Reg | 58 | 1489 | Philip Henderson | p | Inactive |
| June-Reg | 59 | 1504 | Peter Quittner | of | Retired |
| June-Reg | 60 | 1518 | Todd Moser | p | Inactive |
| June-Reg | 61 | 1531 | Ryan Roberts | p | Retired |
| June-Reg | 62 | 1543 | Tom Buckman | p | Retired |
| June-Reg | 63 | 1555 | Curtis Hall | 3B | Inactive |
| June-Reg | 64 | 1567 | Tim Hicks | of-1B | Inactive |
| June-Reg | 65 | 1578 | Greg McNeill | p | Inactive |
| June-Reg | 66 | 1588 | John Payne | p | Inactive |
| June-Reg | 67 | 1597 | Jonathan Moores | p | Retired |
| June-Reg | 68 | 1606 | Josh Deakman | p | Retired |
| June-Reg | 69 | 1615 | Ross Atkins | p | Retired |
| June-Reg | 70 | 1623 | Anthony Poindexter | of | Inactive |
| June-Reg | 71 | 1631 | Beau Payne | p | Inactive |
| June-Reg | 72 | 1639 | Glenn Forey | 1B | Inactive |
| June-Reg | 73 | 1646 | Hines Ward | of | Inactive |
| June-Reg | 74 | 1653 | Troy Rauer | of | Retired |
| June-Reg | 75 | 1660 | Tyler Nicol | of | Inactive |
| June-Reg | 76 | 1666 | Douglas Bossert | p | Inactive |
| June-Reg | 77 | 1670 | Brian Benefield | SS | Retired |
| June-Reg | 78 | 1674 | Ward White | of | Inactive |
| June-Reg | 79 | 1677 | Peter Jezerinac | SS | Inactive |
| June-Reg | 80 | 1680 | Michael Howes | p | Inactive |