| East | W | L | Pct | GB |
| Pittsburgh | 96 | 66 | .593 | -- |
| Montreal | 87 | 75 | .537 | 9.0 |
| St. Louis | 83 | 79 | .512 | 13.0 |
| Chi Cubs | 78 | 84 | .481 | 18.0 |
| NY Mets | 72 | 90 | .444 | 24.0 |
| Philadelphia | 70 | 92 | .432 | 26.0 |
| Phase | Rnd | Ovl | Player | Pos | Current Status |
| June-Reg | 1 | 23 | Jason Kendall | OF | Retired (2012) |
| June-Reg | 1 | 33 | Shon Walker | OF | Retired |
| June-Reg | 2 | 47 | Danny Clyburn | OF | Retired |
| June-Reg | 2 | 61 | Trey Beamon | OF | Retired |
| June-Reg | 3 | 91 | Jamie Keefe | SS | Manager - Pittsfield (2011) |
| June-Reg | 4 | 119 | Tim Leger | OF | Retired |
| June-Reg | 5 | 147 | Brett Backlund | P | Retired |
| June-Reg | 6 | 175 | Sean Lawrence | P | Retired |
| June-Reg | 7 | 203 | Dennis Konuszewski | P | Retired |
| June-Reg | 8 | 231 | Aaron Cannaday | C | Retired |
| June-Reg | 9 | 259 | Rod Davidson | P | Retired |
| June-Reg | 10 | 287 | John Turlais | C | Retired |
| June-Reg | 11 | 315 | Jeff Hairston | OF | Retired |
| June-Reg | 12 | 343 | Larry Stablhoefer | OF | Inactive |
| June-Reg | 13 | 371 | Brian Wolf | 1B | Retired |
| June-Reg | 14 | 399 | Jason Phillips | p | Retired |
| June-Reg | 15 | 427 | Ted Klamm | p | Retired |
| June-Reg | 16 | 455 | Travis Palmer | OF | Retired |
| June-Reg | 17 | 483 | Jacob Austin | OF | Retired |
| June-Reg | 18 | 511 | Gary Wilson | p | Retired |
| June-Reg | 19 | 539 | Rico Gholston | 1B | Retired |
| June-Reg | 20 | 567 | John Dillinger | p | Retired |
| June-Reg | 21 | 595 | John Cranford | 3B | Retired |
| June-Reg | 22 | 623 | G.G. Harris | 1B | Retired |
| June-Reg | 23 | 651 | Sean Nolan | SS | Retired |
| June-Reg | 24 | 679 | Michel Laplante | p | Retired |
| June-Reg | 25 | 707 | Steve Connelly | p | Retired |
| June-Reg | 26 | 735 | Mark Mesewicz | p | Retired |
| June-Reg | 27 | 763 | Chance Sanford | SS | Retired |
| June-Reg | 28 | 791 | Matt Jones | 1B | Retired |
| June-Reg | 29 | 819 | Stan Wiltz | 1B | Retired |
| June-Reg | 30 | 847 | Kevin Polcovich | SS | Retired |
| June-Reg | 31 | 875 | Lou Collier | SS | Retired |
| June-Reg | 32 | 903 | Jeff Meszar | SS | Inactive |
| June-Reg | 33 | 931 | Stephen Bosch | p | Inactive |
| June-Reg | 34 | 959 | Jamie Mackert | C | Retired |
| June-Reg | 35 | 987 | Jack Ford | p | Retired |
| June-Reg | 36 | 1015 | Erskine Kelley | Of | Retired |
| June-Reg | 37 | 1043 | Trey Rutledge | p | Retired |
| June-Reg | 38 | 1071 | Jon Gendron | p | Retired |
| June-Reg | 39 | 1099 | Phillip King | Of | Inactive |
| June-Reg | 40 | 1127 | Mark Fabela | p | Inactive |
| June-Reg | 41 | 1155 | Jason Imrisek | C | Retired |
| June-Reg | 42 | 1183 | Rich Townsend | p | Retired |
| June-Reg | 43 | 1211 | Dan Destefano | p | Inactive |
| June-Reg | 44 | 1239 | Riegal Hunt | of | Retired |
| June-Reg | 45 | 1267 | Tim Cossins | of | Minor League field coordinator - Chicago Cubs (2013) |
| June-Reg | 46 | 1295 | Mickey Dutil | p | Inactive |
| June-Reg | 47 | 1323 | Marc Wilkins | p | Retired |
| June-Reg | 48 | 1351 | Adrian Brown | of | Retired |
| June-Reg | 49 | 1379 | Bert Emanuel | of-SS | Inactive |
| June-Reg | 50 | 1407 | James Rudolph | p | Inactive |