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| | 1 | 25 | Scott Heard | $$ | C | 18 | 9/2/1981 | 6-2 | 190 | L | R | A+ | | Rancho Bernardo High School (San Diego,CA) |
| | 1 | 35** | Tyrell Godwin | | CF | 20 | 7/10/1979 | 6-0 | 200 | L | R | MLB | 2005-2005 | University of North Carolina |
| | 1 | 39 | Chad Hawkins | $$ | P | 21 | 7/24/1978 | 6-7 | 205 | R | R | A+ | | Baylor University |
| | 2 | 56 | Jason Bourgeois | | IF | 18 | 1/4/1982 | 5-9 | 170 | B | R | AAA | | Forest Brook High School (Houston,TX) |
| | 2 | 64 | Randy Truselo | | P | 19 | 1/11/1981 | 6-3 | 190 | R | R | A | | Delcastle High School (Wilmington,DE) |
| | 3 | 94 | Chris Russ | | P | 20 | 10/26/1979 | 6-3 | 0 | L | L | A+ | | Towson University |
| | 4 | 124 | Laynce Nix | | OF | 19 | 10/30/1980 | 6-0 | 190 | L | L | MLB | 2003-2007 | Midland High School (Midland,TX) |
| | 5 | 154 | Greg Runser | | P | 21 | 4/5/1979 | 6-1 | 200 | R | R | AA | | University of Houston |
| | 6 | 184 | Matt Meisenheimer | | P | 18 | 10/1/1981 | 6-3 | 180 | R | R | A | | Greenville High School (Greenville,TX) |
| | 7 | 214** | Virgil Vasquez | | P | 18 | 6/7/1982 | 6-3 | 205 | R | R | AA | | Santa Barbara High School (Santa Barbara,CA) |
| | 8 | 244 | Nick Masset | | P | 18 | 5/17/1982 | 6-4 | 190 | R | R | MLB | 2006-2007 | Pinellas Park High School (Pinellas Park,FL) |
| | 9 | 274 | Edwin Encarnacion | | IF | 17 | 1/7/1983 | 6-1 | 175 | R | R | MLB | 2005-2007 | Manuela Toro (Caguas,PR) |
| | 10 | 304 | Billy Montgomery | | OF | 20 | 8/14/1979 | 6-0 | 190 | B | R | Rookie | | San Diego State University |
| | 11 | 334** | Mike Moat | | P | 18 | 10/25/1981 | 6-1 | 190 | R | R | A+ | | Niwot High School (Longmont,CO) |
| | 12 | 364 | Branden Pack | | 1B | 21 | 1/22/1979 | 6-3 | 215 | B | R | A+ | | University of South Carolina |
| | 13 | 394 | Chris Wailand | | P | | | | | | | College | | Manatee Community College |
| | 14 | 424** | Myron Leslie | | 3B | 18 | 5/2/1982 | 6-3 | 210 | B | R | AA | | |
| | 15 | 454** | Scott Nicholson | | P | 20 | 8/24/1979 | 6-0 | 170 | L | L | A- | | Oregon State University |
| | 16 | 484 | Anthony Mongeluzzo | | OF | 21 | 11/23/1978 | 6-1 | 210 | R | R | A | | Florida Atlantic University |
| | 17 | 514** | Andrew Myette | | P | | | | 0 | | | - | | Guildford Park High School (Surrey,BC) |
| | 18 | 544 | Keith Stamler | | P | 20 | 8/20/1979 | 6-2 | 177 | R | R | AAA | | St. John's University |
| | 19 | 574 | A.J. Murray | | P | 18 | 3/17/1982 | 6-3 | 200 | B | L | MLB | 2007-2007 | Uintah High School (Vernal,UT) |
| | 20 | 604 | Tyler Martin | | IF | 22 | 8/31/1977 | 6-2 | 185 | B | R | AA | | Mississippi State University |
| | 21 | 634 | Marion Gleason | | P | | | | 0 | | | - | | Bountiful High School (Bountiful,UT) |
| | 22 | 664 | Caleb Crosby | | | | | | | | | College | | Chipola College |
| | 23 | 694 | Bobb Evans | | | 19 | 3/1/1981 | 5-11 | 185 | L | L | A | | Pepperdine University |
| | 24 | 724 | Timothy Riley | | 2B-OF | | | | 0 | | | - | | James Madison University |
| | 25 | 754 | Frank Sansonetti | | CF | | | | 0 | | | - | | College of Staten Island |
| | 26 | 784 | Jason Gray | | | 22 | 7/7/1977 | 6-1 | 210 | L | R | Rookie | | Rice University |
| | 27 | 814** | Sean Thompson | | P | 19 | 1/3/1981 | 6-2 | 195 | L | L | A+ | | El Camino College |
| | 28 | 844 | Ryan Heath | | P | | | | 0 | | | - | | Midvale High School (Mesa,IN) |
| | 29 | 874 | Justin Quaempts | | | | | 6-3 | 223 | R | R | Ind | | Linn-Benton Community College |
| | 30 | 904 | Nick Devenney | | P | 19 | 7/31/1980 | 6-3 | 240 | R | R | A | | Delgado Community College |
| | 31 | 934 | Joe Lane | | P | | | | 0 | | | - | | Osbourn High School (Manassas,VA) |
| | 32 | 964 | Casey Berry | | P | 19 | 10/30/1980 | 6-1 | 180 | R | R | Rookie | | Cowley County Community College |
| | 33 | 994 | Michael Vargo | | P | | | | 0 | | | - | | Fountain Hills High School (Fountain Hills,AZ) |
| | 34 | 1024** | Garrett Bauer | | | 18 | 9/4/1981 | 6-0 | 163 | R | L | A- | | Lafayette High School (Ballwin,MO) |
| | 35 | 1054 | Worth Scott | | | | | | | | | Ind | | Hendersonville High School (Hendersonville,TN) |
| | 36 | 1084 | Daniel Ellison | | P | | | | 0 | | | - | | Houston High School (Woodland,MS) |
| | 37 | 1114** | Chris Pillsbury | | P | 18 | 10/13/1981 | 6-3 | 190 | R | R | A | | Arlington Country Day School High School (Jacksonville,FL) |
| | 38 | 1144 | Dustin Smith | | C | 19 | 5/8/1981 | 6-2 | 210 | R | R | AA | | Cowley County Community College |
| | 39 | 1174 | Michael Steller | | P | | | | 0 | | | - | | George Mason University |
| | 40 | 1203 | Brian Pecor | | P | | | | 0 | | | - | | Overton High School (Memphis,TN) |
| | 41 | 1232 | Benjamin Ashworth | | P | | | | 0 | | | - | | St. Petersburg College |
| | 42 | 1261** | Juan Serrato | | P | 18 | 11/4/1981 | 6-2 | 175 | R | R | A+ | | Norte Vista High School (Riverside,CA) |
| | 43 | 1289** | Erik Thompson | | P | 18 | 6/23/1982 | 5-11 | 180 | R | R | AAA | | Pine Forest High School (Pensacola,FL) |
| | 44 | 1316 | Julian Davis | | 1B | | | | 0 | | | - | | |
| | 45 | 1342 | James Radford | | P | | | | 0 | | | - | | Bartow High School (Bartow,FL) |
| | 46 | 1366 | Matt Kline | | OF | | | | 0 | | | - | | Arroyo Grande High School (Arroyo Grande,CA) |
| | 47 | 1388 | Jason Guy | | OF | 18 | 4/30/1982 | 5-10 | 170 | L | L | Rookie | | Charlotte High School (Punta Gorda,FL) |
| | 48 | 1408 | Ryan Lupul | | | 20 | 3/10/1980 | 6-0 | 185 | L | L | Ind | | North Idaho Junior College |
| | 49 | 1428** | Shane Reedy | | P | 18 | 6/2/1982 | 6-2 | 200 | R | R | Rookie | | Kearns High School (Kearns,UT) |
| | 50 | 1448 | Ruben Feliciano | | P | 20 | 11/1/1979 | 6-2 | 175 | R | R | A | | Kingsborough High School (Brooklyn,NY) |
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