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| | 1 | 37 | Adam Jones | $$ | SS/P | 17 | 8/1/1985 | 6-2 | 185 | R | R | MLB | 2006-2007 | Morse High School (San Diego,CA) |
| | 2 | 56 | Jeff Flaig | $$ | 3B | 18 | 3/3/1985 | 6-2 | 180 | R | R | A+ | | El Dorado High School (Placentia,CA) |
| | 3 | 86 | Ryan Feierabend | $$ | P | 17 | 8/22/1985 | 6-4 | 200 | L | L | MLB | 2006-2007 | Midview High School (Grafton,OH) |
| | 4 | 116 | Paul Fagan | | P | 18 | 4/13/1985 | 6-5 | 195 | L | L | A+ | | Bartram Trail High School (Jacksonville,FL) |
| | 5 | 146 | Casey Abrams | | P | 21 | 7/17/1981 | 6-4 | 190 | L | L | A | | Wright State University |
| | 6 | 176 | Eric O'Flaherty | | P | 18 | 2/5/1985 | 6-2 | 195 | L | L | MLB | 2006-2007 | Walla Walla High School (Walla Walla,WA) |
| | 7 | 206 | Jeremy Dutton | | 3B | 22 | 11/15/1980 | 5-11 | 195 | L | R | A | | North Carolina State University |
| | 8 | 236 | Tom Oldham | | P | 21 | 5/18/1982 | 6-2 | 208 | L | L | AAA | | Creighton University |
| | 9 | 266 | Justin Ruchti | | C | 22 | 12/11/1980 | 6-2 | 200 | R | R | AA | | Rice University |
| | 10 | 296 | Mike Cox | | 3B | 22 | 11/11/1980 | 6-1 | 185 | R | R | AA | | Florida Atlantic University |
| | 11 | 326 | Joe Woerman | | P | 20 | 12/12/1982 | 6-3 | 200 | R | R | AAA | | San Diego City College |
| | 12 | 356 | Buddy Flores | | P | 19 | 5/19/1984 | 6-4 | 165 | R | R | AA | | University of Texas-El Paso |
| | 13 | 386 | Shawn Nottingham | | P | 18 | 1/22/1985 | 6-0 | 180 | L | L | AAA | | Jackson High School (Jackson,OH) |
| | 14 | 416 | Tim Dorn | | P | 20 | 12/30/1982 | 6-8 | 245 | R | R | A | | East Los Angeles Junior College |
| | 15 | 446 | Scott Maine | | P | 18 | 2/2/1985 | 6-3 | 195 | L | L | A- | | William T. Dwyer High School (West Palm Beach,FL) |
| | 16 | 476 | Brian Schweiger | | C | 20 | 8/21/1982 | 6-0 | 200 | R | R | AAA | | California State University, San Bernardino |
| | 17 | 506 | Jason Snyder | | P | 20 | 4/6/1983 | 6-5 | 185 | R | R | AAA | | Dixie Junior College |
| | 18 | 536 | James Hymon | | SS | 23 | 4/22/1980 | 6-0 | 170 | R | R | Ind | | Rust College |
| | 19 | 566 | Aaron Jensen | | P | 19 | 6/11/1984 | 6-2 | 195 | R | R | A+ | | Springville High School (Springville,UT) |
| | 20 | 596 | Carroll Gaddis | | OF | 17 | 9/12/1985 | 6-1 | 210 | R | R | College | | Hoke County High School (Raeford,NC) |
| | 21 | 626 | Casey Craig | | OF | 18 | 1/12/1985 | 5-10 | 185 | L | R | AA | | Granite Hills High School (El Cajon,CA) |
| | 22 | 656 | Sam Bradford | | OF | | | | | | | AAA | | Gardner-Webb University |
| | 23 | 686 | Danny Santin | | C | 17 | 11/7/1985 | 6-3 | 190 | L | R | AAA | | Brito Private High School (Miami,FL) |
| | 24 | 716 | Kenneth Falconer | | P | 20 | 9/27/1982 | 6-6 | 205 | L | R | A- | | University of Kansas |
| | 25 | 746 | Jason Cable | | P | 17 | 7/4/1985 | 6-0 | 160 | L | L | - | | Palmdale High School (Palmdale,CA) |
| | 26 | 776** | Dwayne Lynah | | OF | 19 | 3/20/1984 | 6-2 | 170 | R | L | - | | Spartanburg Methodist College |
| | 27 | 806 | Richard Breshears | | P | 19 | 8/12/1983 | 6-4 | 180 | L | L | Rookie | | Hutchinson Community College |
| | 28 | 836 | Daniel McDonald | | P | 18 | 11/25/1984 | 6-3 | 215 | L | L | - | | Theodore High School (Theodore,AL) |
| | 29 | 866 | Chris Garcia | | P | 18 | 9/21/1984 | 6-1 | 205 | R | R | - | | |
| | 30 | 896** | Steve Santos | | P | 18 | 7/7/1984 | 6-2 | 200 | R | R | - | | Los Medanos (Calif.) Junior College |
| | 31 | 926** | Doug Mathis | | P | 20 | 6/7/1983 | 6-2 | 218 | R | R | AAA | | Central Arizona College |
| | 32 | 956 | Adam Poole | | P | 20 | 1/26/1983 | 6-3 | 180 | L | L | College | | Lincoln Trail (Ill.) Junior College |
| | 33 | 986 | Blake Rampy | | P | 18 | 3/15/1985 | 6-1 | 185 | R | R | College | | Tomball High School (Tomball,TX) |
| | 34 | 1016 | Paul Keck | | C | 19 | 6/16/1984 | 6-3 | 205 | R | R | Rookie | | Sacramento City College |
| | 35 | 1046** | Andy Reichard | | P | 18 | 12/4/1984 | 6-4 | 235 | R | R | Rookie | | State College Area High School (State College,PA) |
| | 36 | 1076 | Alex Baboulas | | P | 17 | 12/16/1985 | 6-2 | 190 | L | L | College | | Birchmount Park High School (Scarborough,ON) |
| | 37 | 1106 | Joel Allin | | P | 18 | 1/21/1985 | 6-1 | 185 | L | L | - | | Stockbridge High School (Stockbridge,GA) |
| | 38 | 1136** | Yusuf Carter | | C | 18 | 2/6/1985 | 6-3 | 197 | B | R | A+ | | Canarsie High School (Brooklyn,NY) |
| | 39 | 1166 | Trevor Heid | | OF | 21 | 4/30/1982 | 6-3 | 210 | R | R | A+ | | Dixie Junior College |
| | 40 | 1196 | Mark Tournangeau | | P | 19 | 5/8/1984 | 6-5 | 200 | L | R | College | | Queen Elizabeth Park High School (Oakville,ON) |
| | 41 | 1226 | Dane Awana | | P | 19 | 1/8/1984 | 6-0 | 170 | L | L | - | | Saddleback College |
| | 42 | 1255** | Danny Santiesteban | | OF | 18 | 2/17/1985 | 6-2 | 170 | R | R | A | | Brito Private High School (Miami,FL) |
| | 43 | 1284 | Harold Williams | | P | 18 | 9/23/1984 | 6-3 | 180 | L | L | A | | Cerritos College |
| | 44 | 1312 | Edwin Totesault | | SS | 20 | 6/6/1983 | 5-11 | 165 | L | R | - | | Brito Private High School (Miami,FL) |
| | 45 | 1339 | McCay Green | | P | 19 | 7/3/1983 | 6-3 | 190 | R | R | - | | Lake Sumter Community College |
| | 46 | 1366** | Mike Hofius | | 1B | 21 | 5/3/1982 | 6-2 | 210 | L | L | A | | Long Beach State University |
| | 47 | 1393 | Dan Kapala | | P | 17 | 9/6/1985 | 6-4 | 215 | R | R | A- | | Shrine School High School (Royal Oak,MI) |
| | 48 | 1420 | Markus Roberts | | SS | 17 | 8/1/1985 | 5-8 | 160 | B | R | - | | Deer Valley High School (Antioch,CA) |
| | 49 | 1446 | Jose Laffitte | | OF | 18 | 1/23/1985 | 5-11 | 170 | R | R | - | | Miami Senior High School (Miami,FL) |
| | 50 | 1472 | Tim Turner | | OF | 21 | 6/12/1982 | 6-2 | 175 | L | L | A+ | | East Tennessee State University |
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