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| | 1 | 9 | Mark Phillips | $$ | P | 18 | 12/30/1981 | 6-3 | 215 | L | L | A+ | | Hanover High School (Hanover,PA) |
| | 2 | 49 | Xavier Nady | $$ | OF | 21 | 11/14/1978 | 6-2 | 205 | R | R | MLB | 2000-2007 | University of California |
| | 3 | 79 | Omar Falcon | | C | 17 | 9/1/1982 | 6-0 | 190 | R | R | AA | | Southridge High School (Miami,FL) |
| | 4 | 109 | Mewelde Moore | | OF | 17 | 7/24/1982 | 6-0 | 190 | R | R | Rookie | | Belaire High School (Baton Rouge,LA) |
| | 5 | 139 | Jon Huber | | P | 18 | 7/7/1981 | 6-2 | 190 | R | R | MLB | 2006-2007 | North Fort Myers High School (Fort Myers,FL) |
| | 6 | 169 | Ryan Earey | | P | 21 | 3/5/1979 | 6-4 | 225 | R | R | A | | University of North Carolina |
| | 7 | 199 | Lee Mccool | | IF | 21 | 3/5/1979 | 5-11 | 180 | R | R | AAA | | University of North Florida |
| | 8 | 229 | David Giorgis | | OF | 18 | 8/14/1981 | 6-1 | 195 | B | R | A- | | Rancho Bernardo High School (San Diego,CA) |
| | 9 | 259 | John Scott | | P | 18 | 2/7/1982 | 6-1 | 170 | R | R | Rookie | | Ramona High School (Riverside,CA) |
| | 10 | 289 | Kevin Nulton | | 2B | 17 | 8/16/1982 | 6-0 | 175 | R | R | A | | El Capitan High School (Lakeside,CA) |
| | 11 | 319 | Joel Klatt | | 3B | 18 | 2/4/1982 | 6-2 | 205 | R | R | Rookie | | Pomona High School (Arvada,CO) |
| | 12 | 349 | Juan Valle | | P | | | | 0 | | | - | | Efrain Sanchez (Hidalgo Moca,PR) |
| | 13 | 379 | Justin Germano | | P | 17 | 8/6/1982 | 6-2 | 190 | R | R | MLB | 2004-2007 | Claremont High School (Claremont,CA) |
| | 14 | 409 | John Woodward | | 1B | 23 | 11/10/1976 | 6-3 | 220 | L | R | A | | University of Houston |
| | 15 | 439 | John DiBetta | | 3B | 19 | 10/19/1980 | 6-1 | 190 | R | R | A | | Community College of Southern Nevada |
| | 16 | 469 | Chuck Lawton | | P | 18 | 9/25/1981 | 6-1 | 180 | R | R | Ind | | Palatka High School (Palatka,FL) |
| | 17 | 499 | Jarrett Roenicke | | RF | 20 | 1/15/1980 | 6-2 | 195 | L | L | A- | | Yuba (Calif.) Community College |
| | 18 | 529 | Corey Alexander | | OF | | | | 0 | | | - | | Forest Brook High School (Houston,TX) |
| | 19 | 559** | Andrew Jenson | | 1B | 18 | 12/31/1981 | 6-2 | 200 | L | L | Rookie | | El Capitan High School (Lakeside,CA) |
| | 20 | 589 | David Day | | RF-CF | | | | 0 | | | Rookie | | Brigham Young University |
| | 21 | 619 | Michael Adams | | | | | | | | | College | | Cherokee High School (Canton,GA) |
| | 22 | 649 | J.J. Furmaniak | | IF | 20 | 7/31/1979 | 6-0 | 190 | R | R | MLB | 2005-2007 | Lewis University |
| | 23 | 679 | Craig Thompson | | | 22 | 9/27/1977 | 6-0 | 190 | B | R | A | | Stanford University |
| | 24 | 709 | Edgardo Laureano | | P | 17 | 9/25/1982 | 6-2 | 170 | R | R | Rookie | | Lorenzo Vizcarrondo (Bayamon,PR) |
| | 25 | 739 | Joe Cassel | | P | | | | | | | Rookie | | Los Angeles Pierce College |
| | 26 | 769** | Chad Cordero | | P | 18 | 3/18/1982 | 6-0 | 195 | R | R | MLB | 2003-2007 | Don Antonio Lugo High School (Chino,CA) |
| | 27 | 799 | Kevin Reese | | OF | 22 | 3/11/1978 | 5-11 | 195 | L | L | MLB | 2005-2006 | University of San Diego |
| | 28 | 829 | John Herbert | | P | 22 | 10/23/1977 | 6-8 | 225 | R | R | AAA | | University of San Francisco |
| | 29 | 859 | Dennis Chapman | | P | 21 | 2/8/1979 | 6-3 | 185 | R | R | A | | Towson University |
| | 30 | 889 | Jesse Bussard | | P | 22 | 4/17/1978 | 6-2 | 180 | R | R | Rookie | | Sonoma State University |
| | 31 | 919 | Noah Grubenhoff | | P | | | | 0 | | | - | | Selah High School (Selah,WA) |
| | 32 | 949 | Jamie Franey | | P | | | | 0 | | | - | | Ascension College |
| | 33 | 979 | Mike Bitter | | C | | | | 0 | | | - | | University of Houston |
| | 34 | 1009 | Marc Dulkowski | | P | 18 | 5/28/1982 | 6-0 | 190 | B | R | A | | Victor J. Andrew High School (Tinley Park,IL) |
| | 35 | 1039 | Claiborne Daniels | | OF | 18 | 10/1/1981 | 6-2 | 165 | R | R | Rookie | | Stephen F. Austin (Richmond,TX) |
| | 36 | 1069 | Mike Brown | | LF | | | | 0 | | | - | | Chipola College |
| | 37 | 1099 | Alshawn Rodgers | | OF | | | | 0 | | | - | | David Starr Jordan High School (Long Beach,CA) |
| | 38 | 1129** | - | | 3B | | | | 0 | | | AA | | Galveston College |
| | 39 | 1159 | Justin Williams | | P | 20 | 2/26/1980 | 6-1 | 195 | R | R | Rookie | | Seward County Community College |
| | 40 | 1189 | Andre Gomez | | C | 21 | 9/6/1978 | 6-2 | 185 | R | R | A+ | | Cal Poly |
| | 41 | 1218 | Matt Pollard | | P | | | | 0 | | | - | | Poteau High School (Poteau,OK) |
| | 42 | 1247 | Jose Garcia | | 2B | | | | 0 | | | - | | T. Alva Edison Caguas (PR) |
| | 43 | 1276 | Dave Sanders | | P | 20 | 8/29/1979 | 6-0 | 200 | L | L | MLB | 2003-2005 | Jenks High School (Jenks,OK) |
| | 44 | 1303 | Jason Hammond | | CF | | | | 0 | | | - | | Grossmont College |
| | 45 | 1329 | Daniel Shanahan | | P | | | | 0 | | | - | | UMS Wright Prep High School (Mobile,AL) |
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