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| | 1 | 16 | Billy Traber | $$ | P | 20 | 9/18/1979 | 6-5 | 205 | L | L | MLB | 2003-2007 | Loyola Marymount University |
| | 1 | 36 | Bob Keppel | $$ | P | 18 | 6/11/1982 | 6-5 | 200 | R | R | MLB | 2006-2007 | De Smet Jesuit High School (Creve Coeur,MO) |
| | 2 | 65 | Matthew Peterson | | P | 18 | 2/11/1982 | 6-5 | 217 | R | R | AAA | | Rapides School High School (Alexandria,LA) |
| | 3 | 95 | Josh Reynolds | | P | 20 | 9/27/1979 | 6-2 | 192 | R | R | A+ | | Central Missouri State University |
| | 4 | 125 | Brandon Wilson | | C | 17 | 9/1/1982 | 6-4 | 190 | R | R | A+ | | Christian Life Academy High School (Baton Rouge,LA) |
| | 5 | 155 | Quenten Patterson | $$ | P | 22 | 12/29/1977 | 6-3 | 210 | R | R | A | | Oklahoma State University |
| | 6 | 185 | Chris Basak | | SS | 21 | 12/6/1978 | 6-2 | 185 | R | R | MLB | 2007-2007 | University of Illinois |
| | 7 | 215 | Jeff Duncan | | OF | 21 | 12/9/1978 | 6-2 | 188 | L | L | MLB | 2003-2004 | Arizona State University |
| | 8 | 245 | Chad Bowen | | P | 18 | 4/28/1982 | 6-4 | 200 | R | R | A | | Gallatin High School (Gallatin,TN) |
| | 9 | 275 | Nick Mattioni | | P | 21 | 3/14/1979 | 6-3 | 200 | R | R | AAA | | Florida Atlantic University |
| | 10 | 305 | Travis Veracka | | P | | | | | | | College | | University of Massachusetts |
| | 11 | 335 | John Wilson | | C | 21 | 9/29/1978 | 6-1 | 210 | R | R | AAA | | University of Kentucky |
| | 12 | 365** | Joe Faulkner | | 1B | 22 | 12/12/1977 | 6-4 | 208 | R | R | - | | Auburn University |
| | 13 | 395 | Collin Perschon | | P | | | | 0 | | | - | | Bellevue Community College (WA) |
| | 14 | 425** | Luis Robles | | C | 18 | 3/2/1982 | 6-4 | 180 | R | R | A+ | | Rialto High School (Rialto,CA) |
| | 15 | 455 | Wayne Ough | | P | 21 | 11/27/1978 | 6-2 | 180 | R | R | AA | | Trinidad State Junior College |
| | 16 | 485** | B.J. Benik | | P | 21 | 9/13/1978 | 6-1 | 190 | R | R | AA | | Seton Hall University |
| | 17 | 515 | Chris Nunez | | P | | | | 0 | | | - | | California State University, Fullerton |
| | 18 | 545** | Mike Cox | | p | 21 | 11/3/1978 | 5-11 | 195 | L | L | A+ | | University of Texas-Pan American |
| | 19 | 575 | Travis Rios | | P | 18 | 10/3/1981 | 6-2 | 205 | R | R | A+ | | Eustis High School (Eustis,FL) |
| | 20 | 605 | Chad Elliott | | P | 22 | 1/28/1978 | 6-1 | 187 | R | L | AA | | Cal State Sacramento |
| | 21 | 635** | Scott Shoemaker | | | 18 | 9/21/1981 | 6-4 | 215 | R | R | AAA | | Grossmont College |
| | 22 | 665 | Stephen Nicholas | | P | | | | 0 | | | - | | Fort Dale-South Butler AC High School (Greenville,AL) |
| | 23 | 695 | Anthony Coyne | | SS-2B | 21 | 2/22/1979 | 5-10 | 190 | R | R | A- | | Yale University |
| | 24 | 725 | Jonathan Craig | | P | 19 | 1/31/1981 | 6-5 | 245 | R | R | Rookie | | Young Harris College |
| | 25 | 755** | Skyler Fulton | | CF | 18 | 6/17/1982 | 6-1 | 210 | B | R | - | | Capital High School (Olympia,WA) |
| | 26 | 785 | Jose Castaneda | | C | 22 | 10/16/1977 | 5-11 | 195 | R | R | A | | University of Texas |
| | 27 | 815 | John Raffo | | 1B-LF | 22 | 11/4/1977 | 6-2 | 205 | L | L | A | | Florida Atlantic University |
| | 28 | 845 | Justin Wendt | | 1B | 18 | 12/24/1981 | 6-3 | 240 | L | R | A- | | St. David Catholic High School (Waterloo,ON) |
| | 29 | 875** | Chris Davis | | | 18 | 9/29/1981 | 6-4 | 180 | R | R | Ind | | Reedley Junior College |
| | 30 | 905 | Timothy Flannigan | | 3B | 21 | 7/29/1978 | 6-2 | 210 | R | R | A | | Saint Xavier University |
| | 31 | 935 | Thomas Hepworth | | P | | | | 0 | | | - | | Carteret High School (Carteret,NJ) |
| | 32 | 965 | Tim Lavigne | | P | 21 | 7/4/1978 | 5-11 | 180 | R | R | AAA | | University of Virginia |
| | 33 | 995 | Freddy Jimenez | | CF | | | | 0 | | | - | | Monsignor Pace High School (Opa Locka,FL) |
| | 34 | 1025 | Tanner Osberg | | P | 17 | 9/10/1982 | 6-4 | 180 | L | R | A | | River Glen (Red Deer County,CT) |
| | 35 | 1055 | David Byard | | P | 22 | 6/1/1978 | 6-3 | 240 | R | R | AAA | | Mount Vernon Nazarene University (Ohio) |
| | 36 | 1085 | Luz Portobanco | | P | 20 | 9/15/1979 | 6-3 | 200 | R | R | AA | | Miami-Dade College |
| | 37 | 1115 | Nathen Vicari | | P | | | | 0 | | | - | | Yuba (Calif.) Community College |
| | 38 | 1145 | Ryan Danly | | P | 19 | 6/23/1981 | 6-7 | 190 | L | L | A | | Jefferson High School (Cedar Rapids,IA) |
| | 39 | 1175** | Brendan Winn | | CF | | | | 0 | | | College | | Merritt Island High School (Merritt Island,FL) |
| | 40 | 1204 | Joe Jiannetti | | 2B | 18 | 9/25/1981 | 6-1 | 190 | R | R | AA | | St. Petersburg High School (St. Petersburg,FL) |
| | 41 | 1233 | Verissimo Pereira | | C | 17 | 1/6/1983 | 6-1 | 195 | R | R | - | | Edouard Montpetit High School (Montreal,QC) |
| | 42 | 1262 | Greg Burke | | | | | 6-4 | 205 | R | R | Ind | | Gloucester Catholic High School (Gloucester,NJ) |
| | 43 | 1290 | Cristian Cajigas | | SS | | | | 0 | | | - | | Dr. Carlos Gonzalez High School (Aguada,PR) |
| | 44 | 1317** | Justin Harris | | SS | 19 | 5/25/1981 | 6-0 | 170 | R | R | A+ | | Manatee Community College |
| | 45 | 1343 | Brett Harper | | 3B-1B | 18 | 7/13/1981 | 6-4 | 180 | L | R | AA | | Desert Mountain High School (Scottsdale,AZ) |
| | 46 | 1367** | Jody Roughton | | 1B | 19 | 5/6/1981 | 6-1 | 190 | L | R | AA | | Maple Woods Community College |
| | 47 | 1389 | David Housel | | 2B | 18 | 9/6/1981 | 6-2 | 160 | B | R | A+ | | West Morris Central High School (Chester,NJ) |
| | 48 | 1409 | Daniel Rubino | | P | | | | 0 | | | - | | Coconut Creek High School (Coconut Creek,FL) |
| | 49 | 1429** | Edward Cannon | | P | 18 | 11/13/1981 | 6-1 | 175 | R | R | College | | Sebring High School (Sebring,FL) |
| | 50 | 1449** | Jamar Hill | | OF | 17 | 9/20/1982 | 6-3 | 200 | R | R | AA | | Bartlett High School (Anchorage,AK) |
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