| Rk | Team | Nickname | W | L | Pct | Gbl | Overall | RF | RA | Manager | Stadium | Top Batter | Top Pitcher | Playoffs |
| 1 | Southern Miss | Golden Eagles | 16 | 8 | .667 | -- | 39-17 | 396 | 267 | Scott Berry | Pete Taylor Park | Tyler Koelling (9) | Todd McInnis (9) | CWS Regionals |
| 2 | Rice ** | Owls | 16 | 8 | .667 | -- | 41-19 | 370 | 261 | Wayne Graham | Reckling Park | Anthony Rendon (4) | Tony Cingrani (2) | Conference Champions,CWS Regionals,#15 in Nation |
| 3 | East Carolina | Pirates | 14 | 10 | .583 | 2.0 | 39-19 | 335 | 222 | Billy Godwin | Clark-LeClair Stadium | Trent Whitehead (10) | Seth Maness (1) | CWS Regionals,#25 in Nation |
| 4 | Central Florida | Knights | 12 | 12 | .500 | 4.0 | 38-21 | 428 | 295 | Terry Rooney | Jay Bergman Field | Jon Griffin (1) | Johnny Sedlock (11) | CWS Regionals |
| 5 | Memphis | Tigers | 12 | 12 | .500 | 4.0 | 30-27 | 365 | 319 | Daron Schoenrock | FedEx Park | Chad Zurcher (3) | Ben Paullus (15) | |
| 6 | Houston | Cougars | 12 | 12 | .500 | 4.0 | 27-32 | 353 | 335 | Todd Whitting | Cougar Field | Landon Appling (5) | Jordan Lewis (25) | Conference Finalists |
| 7 | Tulane | Green Wave | 10 | 14 | .417 | 6.0 | 31-26 | 274 | 293 | Rick Jones | Greer Field at Turchin St | Jeremy Schaffer (6) | Conrad Flynn (12) | |
| 8 | Alabama-Birmingham | Blazers | 9 | 15 | .375 | 7.0 | 29-28 | 278 | 318 | Brian Shoop | Jerry D. Young Memorial F | Nick Crawford (17) | Ryan Woolley (4) | |
| 9 | Marshall | Thundering Herd | 7 | 17 | .292 | 9.0 | 20-31 | 298 | 316 | Jeff Waggoner | Appalachian Power Park | Victor Ramos (27) | Andrew Sikula (27) |