An organized section of a full season review with standings, team totals, leaderboards, player registers and much more.
A list of all players with at least one appearance in this league. Players may appear multiple times in one league if they played on more than one team.
| Nick Abel | Brooklyn | P | AA | 6-4 | 200 | R | R | 2/18/1983 | 23 | Wantaugh,New York | 2006 | UDFA | | NYM | |
| Miguel Abreu | Aberdeen | SS-3B | AAA | 6-0 | 190 | R | R | 11/14/1984 | 21 | Salinas,Puerto Rico | 2005 | 28 | 843 | BAL | |
| Ryan Adams | Aberdeen | 2B | MLB | 6-0 | 185 | R | R | 4/21/1987 | 19 | New Orleans,Louisiana | 2006 | 2 | 58 | BAL | |
| Tyler Addison | Staten Island | P | A- | 6-1 | 215 | R | R | 7/26/1984 | 21 | Spartanburg,South Carolina | 2006 | UDFA | | NYY | |
| Wilfreddy Aguirre | Auburn | P | A- | 6-2 | 180 | L | L | 11/8/1986 | 19 | Maracay,Venezuela | 2005 | UDFA | | TOR | |
| Juan Agustin | Jamestown | OF | A- | 5-11 | 160 | R | R | 10/30/1984 | 21 | Santo Domingo,Dominican Republic | 2005 | UDFA | | FLA | |
| Stuart Alexander | Jamestown | P | A | 6-4 | 225 | R | R | 10/25/1984 | 21 | Santa Rosa,California | 2003 | 29 | 863 | FLA | |
| Gabriel Alfaro | Auburn | P | A- | 6-4 | 190 | R | R | 6/14/1983 | 23 | Puerto Ordaz,Venezuela | 2005 | UDFA | | TOR | |
| Brent Allar | Aberdeen | P | A+ | 6-2 | 210 | R | R | 3/1/1985 | 21 | Aledo,Texas | 2006 | 14 | 415 | BAL | |
| Basilio Alvarez | Williamsport | P | A+ | 6-3 | 160 | R | R | 1/2/1984 | 22 | San Pedro de Macoris,Dominican Republic | 2000 | UDFA | | PIT | |
| Cory Anderson | Vermont | P | A- | 6-4 | 220 | R | R | 12/18/1983 | 22 | Shakopee,Minnesota | 2006 | 43 | 1290 | WAN | |
| Bobby Andrews | Aberdeen | OF | AA | 6-1 | 195 | R | R | 12/23/1983 | 22 | Olongapo Bay,Phillipines | 2005 | 7 | 213 | BAL | |
| P.J. Antoniato | Batavia | SS | A+ | 5-9 | 185 | R | R | 7/2/1983 | 22 | Levittown,New York | 2005 | 15 | 457 | PHI | |
| Josh Appell | Brooklyn | P | A+ | 6-1 | 195 | L | L | 6/23/1983 | 23 | Woodmere,New York | 2005 | UDFA | | NYM | |
| Rene Aqueron | Aberdeen | IF | A | 5-10 | 180 | B | R | 10/14/1981 | 24 | Mayaguez,Puerto Rico | 2005 | UDFA | | BAL | |
| Brian Aragon | Staten Island | OF | A | 6-1 | 205 | L | L | 1/12/1984 | 22 | Miami,Florida | 2006 | 22 | 674 | NYY | |
| Manuel Arambarris | Lowell | 1B | A | 6-0 | 178 | R | R | 8/25/1985 | 20 | Carabobo,Venezuela | 2005 | UDFA | | BOS | |
| Douglas Arguello | Tri City | P | AAA | 6-1 | 175 | L | L | 11/21/1984 | 21 | Managua,Nicaragua | 2001 | UDFA | | HOU | |
| Erik Arnesen | Vermont | P | AAA | 6-3 | 240 | R | R | 3/19/1984 | 22 | Franklin,New Jersey | 2006 | 17 | 511 | WAN | |
| Olivo Astacio | Williamsport | P | AA | 6-5 | 190 | R | R | 7/28/1984 | 21 | Santo Domingo,Dominican Republic | 2002 | UDFA | | BOS | |
| Angel Avila | Aberdeen | P | A- | 6-0 | 170 | R | R | 6/26/1984 | 22 | San Pedro de Macoris,Dominican Republic | 2001 | UDFA | | BAL | |
| Edgar Babilonia | Tri City | IF | A | 5-10 | 160 | R | R | 8/5/1983 | 22 | Cartagena,Colombia | 1999 | UDFA | | HOU | |
| Brian Baisley | Staten Island | C | A+ | 6-3 | 217 | R | R | 12/19/1982 | 23 | Land O'Lakes,Florida | 2006 | 24 | 734 | NYY | |
| Brian Baker | Hudson Valley | P | AAA | 6-5 | 190 | R | R | 1/10/1983 | 23 | Brooklyn,New York | 2005 | UDFA | | TB | |
| Jonathan Baksh | Auburn | RF | A+ | 6-1 | 200 | L | R | 3/1/1985 | 21 | Mississauga,Ontario | 2006 | 7 | 210 | TOR | |
| Zach Baldwin | Vermont | P | A | 6-5 | 225 | R | L | 5/21/1983 | 23 | Barboursville,West Virginia | 2006 | 31 | 931 | WAN | |
| James Barksdale | Williamsport | OF | A+ | 5-10 | 175 | L | L | 5/7/1985 | 21 | Memphis,Tennessee | 2006 | 15 | 440 | PIT | |
| Raul Barron | Auburn | P | AAA | 6-0 | 170 | B | R | 4/4/1986 | 20 | Glendale,California | 2006 | 30 | 900 | TOR | |
| Will Bashelor | Brooklyn | OF | A- | 6-0 | 180 | R | R | 4/23/1985 | 21 | Oceanside,California | 2006 | 28 | 844 | NYM | |
| Aaron Bates | Lowell | 1B | MLB | 6-4 | 232 | R | R | 3/10/1984 | 22 | New York,New York | 2006 | 3 | 83 | BOS | |
| Jeff Beachum | Staten Island | IF | A+ | 6-0 | 186 | R | R | 11/5/1983 | 22 | Memphis,Tennessee | 2006 | UDFA | | TB | |
| Pedro Beato | Aberdeen | P | MLB | 6-5 | 210 | R | R | 10/27/1986 | 19 | Santo Domingo,Dominican Republic | 2006 | 1 | 32 | BAL | |
| Travis Beazley | Lowell | P | AA | 6-0 | 175 | R | R | 6/17/1983 | 23 | Richmond,Virginia | 2006 | 38 | 1153 | BOS | |
| Bubba Bell | Lowell | RF | AAA | 6-0 | 195 | L | R | 10/9/1982 | 23 | Houston,Texas | 2005 | 39 | 1187 | BOS | |
| Duane Below | Oneonta | P | MLB | 6-2 | 205 | L | L | 11/15/1985 | 20 | Britton,Michigan | 2006 | 19 | 562 | DET | |
| Gabriel Benitez | Jamestown | P | A+ | 6-4 | 165 | R | R | 3/1/1983 | 23 | Maracay,Venezuela | 1999 | UDFA | | FLA | |
| Charles Benoit | Williamsport | P | A+ | 6-2 | 225 | L | L | 9/24/1984 | 21 | Southlake,Texas | 2006 | 10 | 290 | PIT | |
| Shane Benson | Auburn | P | A- | 6-4 | 190 | R | R | 12/15/1986 | 19 | Sydney,Australia | 2005 | UDFA | | TOR | |
| Jason Berken | Aberdeen | P | MLB | 6-0 | 175 | R | R | 11/27/1983 | 22 | Green Bay,Wisconsin | 2006 | 6 | 175 | BAL | |
| Quintin Berry | Batavia | LF-CF | MLB | 6-1 | 165 | L | L | 11/21/1984 | 21 | San Diego,California | 2006 | 5 | 157 | PHI | |
| Randor Bierd | Oneonta | P | MLB | 6-4 | 190 | R | R | 3/14/1984 | 22 | Santo Domingo,Dominican Republic | 2003 | UDFA | | DET | |
| Dennis Bigley | Auburn | P | A- | 6-3 | 190 | R | R | 8/18/1983 | 22 | Lancaster,Texas | 2005 | 22 | 656 | TOR | |
| Zach Bird | Jamestown | P | A | 6-0 | 205 | R | R | 5/17/1984 | 22 | Eugene,Oregon | 2006 | UDFA | | FLA | |
| Kurt Birkins | Aberdeen | P | MLB | 6-2 | 188 | L | L | 8/11/1980 | 25 | Canoga Park,California | 2000 | 33 | 984 | BAL | |
| Jake Blackwood | Jamestown | LF-3B | AA | 6-0 | 195 | R | R | 9/14/1985 | 20 | Charleston,South Carolina | 2006 | 16 | 485 | FLA | |
| Brennan Boesch | Oneonta | RF | MLB | 6-5 | 185 | L | L | 4/12/1985 | 21 | Santa Monica,California | 2006 | 3 | 82 | DET | |
| Brian Bogusevic | Tri City | RF | MLB | 6-3 | 215 | L | L | 2/18/1984 | 22 | Oak Lawn,Illinois | 2005 | 1 | 24 | HOU | |
| Brett Bordes | Aberdeen | P | A+ | 5-10 | 175 | L | L | 11/30/1983 | 22 | Mesa,Arizona | 2006 | 9 | 265 | BAL | |
| Ronnie Bourquin | Oneonta | 3B | AA | 6-3 | 210 | L | R | 4/29/1985 | 21 | Canton,Ohio | 2006 | 2 | 50 | DET | |
| Dan Brauer | Batavia | P | A+ | 6-0 | 210 | L | L | 10/14/1983 | 22 | Wheaton,Illinois | 2006 | 6 | 187 | PHI | |
| Pat Bresnahan | Williamsport | P | AA | 6-1 | 195 | R | R | 4/23/1985 | 21 | Danbury,Connecticut | 2006 | 5 | 140 | PIT | |
| Eric Brown | Brooklyn | P | AA | 6-4 | 228 | R | R | 2/23/1984 | 22 | Pinehurst,North Carolina | 2005 | 18 | 539 | NYM | |
| John Brownell | Batavia | P | A- | 6-3 | 175 | R | R | 6/28/1983 | 23 | Mitchell,South Dakota | 2006 | 27 | 817 | PHI | |
| Greg Buchanan | Tri City | 2B | A+ | 5-11 | 180 | B | R | 11/16/1983 | 22 | Houston,Texas | 2006 | 9 | 279 | HOU | |
| Jay Buente | Jamestown | P | MLB | 6-2 | 190 | R | R | 9/28/1983 | 22 | Evansville,Indiana | 2006 | 14 | 425 | FLA | |
| Aaron Bulkley | Tri City | OF | A- | 6-4 | 195 | R | R | 5/6/1983 | 23 | Port Byron,New York | 2005 | 16 | 494 | HOU | |
| Brian Bull | Auburn | P | A- | 6-1 | 185 | L | L | 12/29/1983 | 22 | Omaha,Nebraska | 2006 | UDFA | | TOR | |
| Nathan Bunton | Mahoning Valley | P | A- | 6-1 | 205 | R | R | 6/1/1984 | 22 | fairfax,Missouri | 2006 | 38 | 1151 | CLE | |
| Josh Butler | Hudson Valley | P | MLB | 6-5 | 195 | R | R | 12/11/1984 | 21 | Auburn,California | 2006 | 2 | 47 | TB | |
| Justin Byler | Williamsport | OF-3B | A- | 6-2 | 212 | R | R | 8/12/1985 | 20 | Warren,Ohio | 2005 | 36 | 1081 | PIT | |
| Darren Byrd | Batavia | P | AAA | 6-3 | 170 | R | R | 10/24/1986 | 19 | Pensacola,Florida | 2005 | 18 | 547 | PHI | |
| Tim Byrdak | Aberdeen | P | MLB | 5-11 | 180 | L | L | 10/31/1973 | 32 | Oak Lawn,Illinois | 1994 | 5 | 135 | KC | |
| Scott Byrnes | Auburn | P | A- | 6-1 | 200 | R | R | 2/18/1983 | 23 | Cincinnati,Ohio | 2005 | 28 | 836 | TOR | |
| Henry Cabrera | Williamsport | P | AA | 6-4 | 190 | R | R | 12/17/1983 | 22 | Santiago,Dominican Republic | 2005 | UDFA | | BOS | |
| Brandon Caipen | Tri City | 3B-OF | A | 6-0 | 180 | R | R | 8/4/1983 | 22 | Akron,Ohio | 2006 | 28 | 849 | HOU | |
| Adam Calderone | Auburn | RF-LF | AAA | 6-2 | 200 | L | R | 3/17/1984 | 22 | Palm City,Florida | 2006 | 23 | 690 | TOR | |
| Joey Callender | Hudson Valley | 2B | A+ | 5-11 | 165 | R | R | 11/25/1983 | 22 | Bossier City,Louisiana | 2006 | 21 | 619 | TB | |
| Napolean Calzado | Aberdeen | 3B | MLB | 6-3 | 160 | R | R | 2/9/1980 | 26 | Santo Domingo,Dominican Republic | 1996 | UDFA | | BAL | |
| Juan Camilo | Jamestown | P | A+ | 6-3 | 168 | R | R | 4/22/1983 | 23 | San Francisco de Macoris,Dominican Republic | 2004 | UDFA | | FLA | |
| Scott Campbell | Auburn | 2B | AAA | 5-11 | 190 | R | R | 9/25/1984 | 21 | Auckland,New Zealand | 2006 | 10 | 300 | TOR | |
| Brian Capps | Batavia | UT | A- | 6-0 | 185 | B | R | 9/3/1982 | 23 | Irving,Texas | 2006 | 30 | 907 | PHI | |
| Ricky Caputo | Vermont | IF | A- | 6-1 | 180 | R | R | | - | Miller Place,New York | 2006 | 24 | 721 | WAN | |
| David Carpenter | State College | P | MLB | 6-2 | 200 | R | R | 7/15/1985 | 20 | Morgantown,West Virginia | 2006 | 12 | 376 | STL | |
| Drew Carpenter | Batavia | P | MLB | 6-3 | 230 | R | R | 5/18/1985 | 21 | West Covina,California | 2006 | 2 | 65 | PHI | |
| Charles Carter | State College | OF | AAA | 6-2 | 215 | R | R | 9/27/1982 | 23 | Fort Worth,Texas | 2005 | 27 | 830 | STL | |
| David Cash | Aberdeen | SS | A+ | 6-3 | 180 | B | R | 11/22/1985 | 20 | | 2006 | 40 | 1195 | BAL | |
| Francisco Castillo | Staten Island | P | A+ | 6-2 | 195 | R | R | 10/3/1986 | 19 | Bani,Dominican Republic | 2005 | UDFA | | NYY | |
| Jonathan Castillo | Brooklyn | P | A+ | 5-11 | 195 | R | R | 12/27/1983 | 22 | Santo Domingo,Dominican Republic | 2004 | 25 | 734 | NYM | |
| Victor Castillo | Aberdeen | C | A | 5-11 | 180 | B | R | 9/12/1984 | 21 | Maiquetia,Venezuela | 2006 | UDFA | | BAL | |
| Parrish Castor | Jamestown | P | A+ | 6-2 | 180 | L | L | 9/18/1983 | 22 | Keene,New Hampshire | 2004 | 31 | 938 | FLA | |
| Jonathan Castro | Vermont | 2B | A+ | 6-1 | 160 | B | R | 11/29/1983 | 22 | Santo Domingo,Dominican Republic | 2005 | UDFA | | WAN | |
| Francisco Cervelli | Staten Island | C | MLB | 6-1 | 175 | B | R | 3/6/1986 | 20 | Valencia,Venezuela | 2005 | UDFA | | NYY | |
| Mike Chambers | Lowell | 2B | A | 6-0 | 180 | R | R | 1/20/1984 | 22 | Nashua,New Hampshire | 2006 | 32 | 973 | BOS | |
| Chih-Hsien Chiang | Lowell | RF | AAA | 6-2 | 170 | L | R | 2/21/1988 | 18 | Taitung,Taiwan | 2006 | UDFA | | BOS | |
| Brad Clapp | Williamsport | P | A | 6-4 | 215 | R | R | 5/19/1986 | 20 | Seattle,Washington | 2004 | 19 | 562 | PIT | |
| Zach Clark | Aberdeen | P | MLB | 6-0 | 195 | R | R | 7/11/1983 | 22 | Wilmington,Delaware | 2006 | UDFA | | BAL | |
| Matt Clarkson | Williamsport | C | A- | 6-1 | 190 | L | R | 2/24/1984 | 22 | Broken Arrow,Oklahoma | 2006 | 20 | 590 | PIT | |
| Chris Cody | Oneonta | P | AAA | 6-0 | 180 | L | L | 1/7/1984 | 22 | Mount Kisco,New York | 2006 | 8 | 232 | DET | |
| Chris Coghlan | Jamestown | LF-RF | MLB | 6-1 | 190 | L | R | 6/18/1985 | 21 | Gaithersburg,Maryland | 2006 | 1 | 36 | FLA | |
| Kyle Collina | Mahoning Valley | P | A+ | 6-2 | 185 | R | R | 1/21/1984 | 22 | Easton,Pennsylvania | 2006 | UDFA | | CLE | |
| Alexander Concepcion | Batavia | P | AAA | 6-1 | 180 | R | R | 9/27/1984 | 21 | Santo Domingo,Dominican Republic | 2005 | UDFA | | PHI | |
| Jim Conroy | Staten Island | P | A | 6-3 | 190 | R | R | 11/4/1982 | 23 | Rock Island,Illinois | 2005 | 19 | 589 | NYY | |
| Junior Contreras | Brooklyn | 1B | A- | 6-5 | 220 | R | R | 1/12/1986 | 20 | Santo Domingo,Dominican Republic | 2005 | UDFA | | NYM | |
| Brandon Conway | Vermont | SS | A- | 6-3 | 190 | L | R | 11/9/1983 | 22 | Shenandoah Junction,West Virginia | 2004 | 9 | 264 | MTL | |
| Chris Cooper | Mahoning Valley | P | AAA | 5-11 | 190 | L | L | 10/31/1978 | 27 | Pittsburgh,Pennsylvania | 2001 | 35 | 1057 | CLE | |
| James Cooper | Staten Island | OF | AA | 5-10 | 190 | L | R | 2/18/1984 | 22 | Los Angeles,California | 2005 | 9 | 289 | NYY | |
| Scott Cousins | Jamestown | RF | MLB | 6-2 | 180 | L | L | 1/22/1985 | 21 | Reno,Nevada | 2006 | 3 | 95 | FLA | |
| Bryce Cox | Lowell | P | AA | 6-4 | 205 | R | R | 8/10/1984 | 21 | Dallas,Texas | 2006 | 3 | 103 | BOS | |
| Jordan Craft | Lowell | P | A | 6-3 | 200 | R | R | 6/5/1985 | 21 | Bishop,California | 2006 | 13 | 403 | BOS | |
| Allen Craig | State College | 1B | MLB | 6-2 | 190 | R | R | 7/18/1984 | 21 | Mission Viejo,California | 2006 | 8 | 256 | STL | |
| Michael Crotta | Williamsport | P | MLB | 6-6 | 210 | R | R | 9/24/1984 | 21 | Fort Lauderdale,Florida | 2006 | 17 | 500 | PIT | |
| Andrew Cruse | Batavia | P | A+ | 6-1 | 193 | R | R | 5/31/1984 | 22 | Cornelius,North Carolina | 2006 | 9 | 277 | PHI | |
| Elvis Cruz | Brooklyn | OF | A | 6-3 | 180 | R | R | 11/23/1983 | 22 | Santo Domingo,Dominican Republic | 2001 | UDFA | | SEA | |
| Reymond Cruz | Batavia | P | A+ | 6-2 | 170 | R | R | 10/23/1983 | 22 | Santiago,Dominican Republic | 2005 | UDFA | | PHI | |
| Phillip Cuevas | Batavia | 2B | AA | 5-11 | 160 | R | R | 6/30/1985 | 21 | Sabana Grande de Palenque,Dominican Republic | 2003 | UDFA | | PHI | |
| Jacob Cuffman | Williamsport | P | A+ | 6-4 | 190 | R | R | 3/3/1985 | 21 | Butler,Pennsylvania | 2003 | 14 | 405 | PIT | |
| Ryan Cullen | Brooklyn | P | AAA | 6-4 | 220 | L | L | 1/20/1980 | 26 | Sayre,Pennsylvania | 1998 | 33 | 983 | TEX | |
| Cirilo Cumberbatch | Mahoning Valley | OF | AA | 6-2 | 176 | B | R | 7/11/1986 | 19 | Panama City,Panama | 2003 | UDFA | | CLE | |
| Dan Cummins | Brooklyn | C | A+ | 5-9 | 190 | R | R | 12/11/1982 | 23 | Pico Rivera,California | 2005 | UDFA | | NYM | |
| Colin Curtis | Staten Island | RF-2B | MLB | 6-0 | 190 | L | L | 2/1/1985 | 21 | Redmond,Washington | 2006 | 4 | 134 | NYY | |
| Don Czyz | Jamestown | P | A | 6-2 | 200 | R | R | 9/16/1983 | 22 | Overland Park,Kansas | 2006 | 7 | 215 | FLA | |
| Zach Daeges | Lowell | 3B | AAA | 6-4 | 225 | L | R | 11/16/1983 | 22 | Omaha,Nebraska | 2006 | 6 | 193 | BOS | |
| Gary Daley | State College | P | AAA | 6-3 | 200 | R | R | 11/1/1985 | 20 | Grass Valley,California | 2006 | 3 | 106 | STL | |
| Mike Daniel | Vermont | RF-LF | AAA | 6-4 | 185 | L | R | 8/17/1984 | 21 | New Orleans,Louisiana | 2005 | 7 | 204 | WAN | |
| Adam Davis | Mahoning Valley | SS | AA | 5-9 | 185 | B | R | 10/15/1984 | 21 | Fort Myers,Florida | 2006 | 3 | 101 | CLE | |
| Thomas Davis | Jamestown | P | A- | 6-0 | 190 | R | R | 11/12/1982 | 23 | Plano,Texas | 2006 | 19 | 575 | FLA | |
| Zach Davis | Aberdeen | OF | A | 6-0 | 170 | L | L | 2/20/1984 | 22 | Little Rock,Arkansas | 2002 | 28 | 826 | BAL | |
| Todd Davison | Aberdeen | SS | A+ | 5-10 | 175 | R | R | 10/7/1983 | 22 | Somers Point,New Jersey | 2006 | 19 | 565 | BAL | |
| Jorge De la Cruz | Vermont | DH | A | 6-3 | 210 | R | R | 10/2/1985 | 20 | Bonao,Dominican Republic | 2005 | UDFA | | WAN | |
| Jairo De la Rosa | Hudson Valley | 3B | A+ | 6-2 | 170 | R | R | 9/8/1985 | 20 | Santo Domingo,Dominican Republic | 2004 | UDFA | | TB | |
| Wilkin De La Rossa | Staten Island | P | AAA | 6-0 | 156 | L | L | 2/21/1985 | 21 | Santo Domingo,Dominican Republic | 2005 | UDFA | | NYY | |
| Jose De La Torre | Brooklyn | P | MLB | 5-11 | 165 | R | R | 10/17/1985 | 20 | San Juan,Puerto Rico | 2006 | UDFA | | NYM | |
| Evandy De Leon | Mahoning Valley | OF | A- | 6-0 | 170 | R | R | 6/29/1983 | 23 | Azua,Dominican Republic | 2003 | UDFA | | CLE | |
| Santo De Leon | Oneonta | SS | AA | 6-2 | 175 | R | R | 11/1/1983 | 22 | Azua,Dominican Republic | 2003 | UDFA | | DET | |
| Jose De Los Santos | Williamsport | SS | AA | 6-0 | 165 | R | R | 2/17/1985 | 21 | Santo Domingo,Dominican Republic | 2006 | UDFA | | PIT | |
| Juan De Los Santos | Vermont | P | A+ | 6-0 | 184 | R | L | 1/15/1983 | 23 | Yamasa,Dominican Republic | 2006 | UDFA | | WAN | |
| Eddie Degerman | State College | P | AA | 6-4 | 205 | R | R | 9/14/1983 | 22 | Van Nuys,California | 2006 | 4 | 136 | STL | |
| William Delage | Mahoning Valley | P | A- | 6-1 | 170 | L | L | 7/12/1984 | 21 | Nederland,Texas | 2006 | 14 | 431 | CLE | |
| Ryan Delaughter | Vermont | OF | A- | 6-3 | 210 | R | R | 12/31/1986 | 19 | Desoto,Texas | 2005 | 5 | 144 | WAN | |
| Hector Delgadillo | Auburn | P | A | 6-0 | 195 | R | R | 1/2/1983 | 23 | San Antonio,Texas | 2005 | 36 | 1076 | TOR | |
| Jacob Dempsey | Batavia | OF | A- | 6-1 | 225 | L | R | 9/24/1983 | 22 | Virginia Beach,Virginia | 2006 | 21 | 637 | PHI | |
| Fernando DeNaball | Aberdeen | P | A | 6-3 | 180 | R | R | 6/16/1984 | 22 | San Pedro de Macoris,Dominican Republic | 2005 | UDFA | | BAL | |
| Jason Denham | Mahoning Valley | OF | A+ | 6-0 | 170 | L | L | 5/1/1986 | 20 | Walnut Creek,California | 2004 | 13 | 377 | CLE | |
| Kyle Deyoung | Tri City | P | A | 6-0 | 190 | R | R | 8/15/1984 | 21 | Orlando,Florida | 2006 | 31 | 939 | HOU | |
| Seth Dhaenens | Hudson Valley | 2B | A | 6-2 | 175 | L | R | 5/20/1984 | 22 | Mesa,Arizona | 2002 | 50 | 1471 | BOS | |
| Zach Dials | Auburn | P | AA | 6-1 | 190 | R | R | 7/22/1985 | 20 | Wabash,Indiana | 2006 | 28 | 840 | TOR | |
| Jonathan Diaz | Auburn | 2B | AAA | 5-8 | 160 | R | R | 4/10/1985 | 21 | Miami Beach,Florida | 2006 | 12 | 360 | TOR | |
| Randy Dicken | Auburn | P | A | 6-2 | 198 | R | R | 8/19/1982 | 23 | Martinsburg,Pennsylvania | 2004 | 7 | 207 | TOR | |
| Eric Domangue | Brooklyn | P | A | 6-5 | 200 | L | L | 8/16/1984 | 21 | Tomball,Texas | 2005 | 16 | 479 | NYM | |
| Jason Donald | Batavia | SS | MLB | 6-1 | 190 | R | R | 9/4/1984 | 21 | Fresno,California | 2006 | 3 | 97 | PHI | |
| Octavio Dotel | Staten Island | P | MLB | 6-0 | 175 | R | R | 11/25/1975 | 30 | Santo Domingo,Dominican Republic | 1993 | UDFA | | NYM | |
| Felix Doubront | Lowell | P | MLB | 6-2 | 166 | L | L | 10/23/1987 | 18 | Carabobo,Venezuela | 2006 | UDFA | | BOS | |
| Stephen Douglas | Mahoning Valley | OF | AAA | 6-2 | 185 | L | R | 5/10/1985 | 21 | Smyrna,Georgia | 2006 | 16 | 491 | CLE | |
| Michael Dubee | Batavia | P | AAA | 6-2 | 177 | R | R | 1/12/1986 | 20 | Brockton,Massachusetts | 2006 | 18 | 547 | PHI | |
| Grant Duff | Staten Island | P | AAA | 6-6 | 210 | R | R | 12/19/1982 | 23 | Mammoth Lakes,California | 2004 | 31 | 939 | NYY | |
| Michael Dunn | Staten Island | P | MLB | 6-1 | 185 | L | L | 5/23/1985 | 21 | Las Vegas,Nevada | 2004 | 33 | 999 | NYY | |
| Eric Durante | Hudson Valley | 2B | A | 5-10 | 175 | R | R | 7/11/1984 | 21 | Honolulu,Hawaii | 2005 | UDFA | | TB | |
| Miles Durham | Williamsport | RF | AAA | 6-3 | 195 | R | R | 3/21/1983 | 23 | Fort Worth,Texas | 2006 | 22 | 650 | PIT | |
| Teddy Dziuba | Brooklyn | C | AA | 5-10 | 185 | L | R | 10/26/1984 | 21 | Wayne,New Jersey | 2006 | 33 | 994 | NYM | |
| Kelly Edmundson | Mahoning Valley | C | A- | 6-0 | 195 | R | R | 10/3/1983 | 22 | St. Louis,Missouri | 2006 | 11 | 341 | CLE | |
| Jon Egan | Lowell | C | A | 6-4 | 210 | R | R | 10/12/1986 | 19 | Worcester,Massachusetts | 2005 | 2 | 57 | BOS | |
| Jake Eigsti | Brooklyn | SS | AA | 6-0 | 185 | R | R | 6/13/1984 | 22 | Peoria,Illinois | 2006 | 29 | 874 | NYM | |
| Michael Eisenberg | Mahoning Valley | P | A | 6-7 | 200 | L | R | 2/19/1985 | 21 | Philadelphia,Pennsylvania | 2006 | 8 | 251 | CLE | |
| Dan Eisentrager | Mahoning Valley | P | AA | 6-3 | 170 | R | R | 12/30/1980 | 25 | Portland,Oregon | 2002 | 30 | 904 | CLE | |
| Chris Emanuele | Auburn | OF | A+ | 6-0 | 180 | R | R | 2/17/1984 | 22 | Toronto,Ontario | 2006 | 26 | 780 | TOR | |
| Rodolfo Encarnacion | Jamestown | P | A | 5-11 | 180 | R | R | 5/8/1986 | 20 | San Juan,Dominican Republic | 2006 | UDFA | | FLA | |
| Reid Engel | Lowell | OF | AA | 6-2 | 175 | L | R | 5/7/1987 | 19 | San Diego,California | 2005 | 5 | 168 | BOS | |
| Terry Engles | Vermont | P | A+ | 6-4 | 170 | R | R | 11/12/1985 | 20 | Staten Island,New York | 2003 | 20 | 597 | MTL | |
| Andre Enriquez | Vermont | P | A- | 6-3 | 212 | R | R | 5/15/1984 | 22 | Hialeah,Florida | 2005 | 13 | 384 | WAN | |
| Pedro Espinoza | Tri City | 3B | A | 6-2 | 160 | R | R | 5/6/1985 | 21 | Barquisimeto,Venezuela | 2002 | UDFA | | HOU | |
| Keaton Everitt | Staten Island | P | A | 6-7 | 220 | R | R | 2/4/1983 | 23 | Kirkland,Washington | 2005 | 17 | 529 | NYY | |
| Luis Exposito | Lowell | C | MLB | 6-3 | 210 | R | R | 1/20/1987 | 19 | Miami,Florida | 2005 | 31 | 948 | BOS | |
| Joshua Faiola | Aberdeen | P | A- | 6-3 | 200 | R | R | 10/3/1983 | 22 | Pueblo,Colorado | 2006 | 24 | 715 | BAL | |
| Matt Falk | Hudson Valley | IF-P | A | 6-3 | 190 | L | R | 8/25/1984 | 21 | San Juan Capistrano,California | 2005 | 28 | 838 | TB | |
| Zak Farkes | Lowell | 3B | A+ | 5-11 | 210 | R | R | 5/30/1983 | 23 | Boston,Massachusetts | 2004 | 39 | 1175 | BOS | |
| Jeff Farrell | Lowell | P | A- | 6-2 | 180 | R | L | 6/16/1983 | 23 | East Hampton,Connecticut | 2006 | UDFA | | BOS | |
| Mike Felix | Williamsport | P | A+ | 5-11 | 180 | L | L | 8/13/1985 | 20 | Syosset,New York | 2006 | 2 | 48 | PIT | |
| Luis Fernandez | Auburn | SS | A+ | 6-0 | 150 | R | R | 11/16/1987 | 18 | Las Tunas,Cuba | 2006 | 25 | 750 | TOR | |
| Matt Fields | Hudson Valley | 1B | AA | 6-4 | 255 | R | R | 7/8/1985 | 20 | Seattle,Washington | 2004 | 44 | 1302 | TB | |
| Casey Fien | Oneonta | P | MLB | 6-2 | 195 | R | R | 10/21/1983 | 22 | Santa Rosa,California | 2006 | 20 | 592 | DET | |
| Daniel Figueroa | Aberdeen | OF | AA | 6-2 | 170 | L | L | 1/7/1979 | 27 | Santo Domingo,Dominican Republic | 1998 | UDFA | | BOS | |
| Woods Fines | Hudson Valley | P | A | 6-5 | 190 | R | R | 8/14/1985 | 20 | Chapel Hill,North Carolina | 2004 | 14 | 405 | TB | |
| Jhon Florentino | Tri City | SS | AA | 6-0 | 155 | R | R | 8/22/1983 | 22 | Azua,Dominican Republic | 2005 | UDFA | | HOU | |
| Pedro Florimon | Aberdeen | SS | MLB | 6-2 | 165 | B | R | 12/10/1986 | 19 | La Romana,Dominican Republic | 2006 | UDFA | | BAL | |
| Cliff Floyd | Brooklyn | LF-OF | MLB | 6-4 | 240 | L | R | 12/5/1972 | 33 | Chicago,Illinois | 1991 | 1 | 14 | MTL | |
| Shelby Ford | Williamsport | 2B-1B | AAA | 6-3 | 190 | B | R | 12/15/1984 | 21 | Fort Worth,Texas | 2006 | 3 | 80 | PIT | |
| Seth Fortenberry | Staten Island | OF | AAA | 6-2 | 175 | L | L | 9/1/1983 | 22 | Woodville,Texas | 2006 | 11 | 344 | NYY | |
| Keith Foulke | Lowell | P | MLB | 6-0 | 200 | R | R | 10/19/1972 | 33 | Rapid City,South Dakota | 1994 | 9 | 256 | SF | |
| Jose Fragoso | Oneonta | P | A+ | 6-0 | 170 | R | R | 11/12/1984 | 21 | Santiago,Dominican Republic | 2002 | UDFA | | DET | |
| Dan Frega | Mahoning Valley | P | A- | 6-5 | 195 | R | R | 11/16/1984 | 21 | Lombard,Illinois | 2006 | 12 | 371 | CLE | |
| Neal Frontz | Hudson Valley | P | AA | 6-3 | 190 | R | R | 4/6/1984 | 22 | Fort Worth,Texas | 2005 | 24 | 718 | TB | |
| Brad Furnish | State College | P | AA | 6-1 | 185 | B | L | 1/19/1985 | 21 | Wichita Falls,Texas | 2006 | 2 | 54 | STL | |
| Armand Gaerlan | Brooklyn | SS | A+ | 5-10 | 170 | R | R | 8/22/1982 | 23 | Hayward,California | 2004 | 28 | 824 | NYM | |
| Lauren Gagnier | Oneonta | P | AAA | 6-2 | 210 | R | R | 2/28/1985 | 21 | Santa Cruz,California | 2006 | 10 | 292 | DET | |
| Jesus Gamero | Brooklyn | OF | A | 6-1 | 170 | R | R | 1/24/1984 | 22 | Caracas,Venezuela | 2001 | UDFA | | NYM | |
| Victor Garate | Tri City | P | MLB | 6-1 | 160 | L | L | 9/25/1984 | 21 | Maracay,Venezuela | 2005 | UDFA | | HOU | |
| Daniel Garcia | Jamestown | SS | AAA | 5-11 | 175 | R | R | 12/27/1987 | 18 | Covina,California | 2006 | 8 | 245 | FLA | |
| Edgar Garcia | Batavia | P | AA | 6-2 | 190 | R | R | 9/20/1987 | 18 | Las Matas de Farfan,Dominican Republic | 2005 | UDFA | | PHI | |
| Emmanuel Garcia | Brooklyn | SS | AAA | 6-2 | 180 | L | R | 3/4/1986 | 20 | Laval,Quebec | 2005 | UDFA | | NYM | |
| Rudy Garza | Vermont | P | A | 6-2 | 190 | R | R | 4/10/1984 | 22 | St. Charles,Illinois | 2004 | 35 | 1044 | MTL | |
| Lenin Gazo | Batavia | P | A- | 6-1 | 162 | R | R | 7/25/1984 | 21 | Rivas,Nicaragua | 2002 | UDFA | | PHI | |
| Jeff Gerbe | Oneonta | P | AA | 6-3 | 195 | R | R | 7/4/1984 | 21 | Shelby Township,Michigan | 2006 | 16 | 472 | DET | |
| Agustin German | Vermont | C | A+ | 6-0 | 180 | R | R | 12/13/1985 | 20 | San Cristobal,Dominican Republic | 2005 | UDFA | | WAN | |
| Yulkin German | Lowell | P | A | 6-2 | 180 | L | L | 8/27/1983 | 22 | Santo Domingo,Dominican Republic | 2005 | UDFA | | BOS | |
| Glenn Gibson | Vermont | P | A+ | 6-4 | 195 | L | L | 9/21/1987 | 18 | Center Moriches,New York | 2006 | 4 | 121 | WAN | |
| Jose Gil | Staten Island | C | AAA | 6-0 | 170 | B | R | 9/4/1986 | 19 | Barcelona,Venezuela | 2005 | UDFA | | NYY | |
| Roberto Gil | Hudson Valley | P | A- | 6-1 | 160 | R | R | 5/20/1984 | 22 | San Pedro de Macoris,Dominican Republic | 2004 | UDFA | | TB | |
| Kyle Ginley | Auburn | P | A+ | 6-2 | 225 | R | R | 9/1/1986 | 19 | St. Petersburg,Florida | 2006 | 17 | 510 | TOR | |
| Jared Goedert | Mahoning Valley | 3B-LF | AAA | 6-1 | 180 | R | R | 5/25/1985 | 21 | Concordia,Kansas | 2006 | 9 | 281 | CLE | |
| Jim Goethals | Tri City | C | AA | 5-8 | 200 | R | R | 7/12/1982 | 23 | San Mateo,California | 2005 | UDFA | | HOU | |
| Jeremy Goldschmeding | Vermont | SS | A- | 6-2 | 190 | R | R | 12/28/1983 | 22 | Allegan,Michigan | 2006 | 36 | 1081 | WAN | |
| Chris Gomez | Aberdeen | SS | MLB | 6-1 | 195 | R | R | 6/16/1971 | 35 | Los Angeles,California | 1992 | 3 | 84 | DET | |
| Marco Gonzales | State College | P | AAA | 6-0 | 200 | R | R | 5/28/1984 | 22 | Arvada,Colorado | 2000 | 39 | 1152 | MIN | |
| Angel Gonzalez | Williamsport | SS | AA | 5-11 | 165 | B | R | 12/28/1985 | 20 | Rio Piedras,Puerto Rico | 2005 | UDFA | | PIT | |
| Steve Gonzalez | State College | C | A- | 5-10 | 190 | R | R | 5/31/1987 | 19 | San Juan,Puerto Rico | 2005 | 11 | 350 | STL | |
| Luke Gorsett | State College | OF | AA | 6-1 | | R | R | 5/28/1985 | 21 | Denver,Colorado | 2006 | 7 | 226 | STL | |
| Luke Gregerson | State College | P | MLB | 6-3 | 200 | R | R | 5/14/1984 | 22 | Park Ridge,Illinois | 2006 | 28 | 856 | STL | |
| Tim Grogan | Brooklyn | 3B | A- | 6-0 | 195 | L | R | 3/30/1984 | 22 | Fort Thomas,Kentucky | 2005 | 19 | 569 | NYM | |
| Jean Guillen | Lowell | P | A- | 6-3 | 170 | R | R | 3/21/1984 | 22 | Bani,Dominican Republic | 2006 | UDFA | | BOS | |
| Scott Gummo | Hudson Valley | 1B | A- | 6-1 | 230 | R | R | 9/22/1982 | 23 | Altoona,Pennsylvania | 2006 | UDFA | | TB | |
| Francisco Guzman | Vermont | OF | A+ | 6-4 | 195 | R | R | 12/21/1983 | 22 | Pedro Santana,Dominican Republic | 2005 | UDFA | | WAN | |
| Tim Haines | Brooklyn | P | A- | 6-1 | 175 | B | R | 5/19/1985 | 21 | Mission,Texas | 2006 | 27 | 814 | NYM | |
| Brian Hall | Auburn | IF-OF | A- | 6-0 | 190 | R | R | 2/1/1982 | 24 | Carlsbad,New Mexico | 2004 | 10 | 297 | TOR | |
| Bryan Hallberg | Tri City | P | A+ | 6-1 | 200 | R | R | 4/23/1985 | 21 | Westwood,New Jersey | 2006 | 12 | 369 | HOU | |
| Jeremy Hambrice | Brooklyn | OF | A- | 6-2 | 195 | R | R | 3/14/1986 | 20 | Magnolia,Arkansas | 2006 | 31 | 934 | NYM | |
| Josh Hamilton | Hudson Valley | CF-LF | MLB | 6-4 | 240 | L | L | 5/21/1981 | 25 | Raleigh,North Carolina | 1999 | 1 | 1 | TB | |
| Mark Hamilton | State College | LF | MLB | 6-4 | 220 | L | L | 7/29/1984 | 21 | Baltimore,Maryland | 2006 | 2 | 76 | STL | |
| Ben Harrison | Auburn | P | A | 6-1 | 175 | L | L | 4/14/1984 | 22 | St. Louis,Missouri | 2002 | 44 | 1313 | TOR | |
| Ryan Harrison | Vermont | P | A | 6-2 | 190 | R | R | 7/12/1986 | 19 | Westminster,Maryland | 2004 | 23 | 684 | MTL | |
| Chris Hatcher | Jamestown | P | MLB | 6-2 | 180 | B | R | 1/12/1985 | 21 | Kinston,North Carolina | 2006 | 5 | 155 | FLA | |
| Ian Heisel | Williamsport | P | A+ | 6-3 | 225 | R | R | 10/19/1981 | 24 | Pittsburgh,Pennsylvania | 2005 | UDFA | | PIT | |
| Jeremy Hellickson | Hudson Valley | P | MLB | 6-1 | 185 | R | R | 4/8/1987 | 19 | Des Moines,Iowa | 2005 | 4 | 118 | TB | |
| Hart Hering | Mahoning Valley | P | A- | 6-3 | 230 | R | R | 12/12/1983 | 22 | Waco,Texas | 2006 | UDFA | | CLE | |
| Jason Herman | Williamsport | P | A | 6-3 | 210 | R | R | 12/9/1981 | 24 | Springfield,Missouri | 2005 | 31 | 931 | PIT | |
| Mike Hernandez | Mahoning Valley | 1B | AAA | 6-0 | 206 | L | L | 12/24/1971 | 34 | Miami,Florida | 1994 | UDFA | | LAD | |
| Tyler Herron | State College | P | AA | 6-3 | 190 | R | R | 8/5/1986 | 19 | West Palm Beach,Florida | 2005 | 1 | 46 | STL | |
| Joe Hicks | Williamsport | OF | A- | 5-11 | 170 | R | R | 4/22/1984 | 22 | Houston,Texas | 2002 | 9 | 253 | PIT | |
| Garet Hill | Batavia | P | A | 6-5 | 217 | R | R | 5/24/1984 | 22 | Fontana,California | 2006 | 24 | 727 | PHI | |
| Mitch Hilligoss | Staten Island | 3B-LF | AA | 6-1 | 195 | L | R | 6/17/1985 | 21 | Windsor,Illinois | 2006 | 6 | 194 | NYY | |
| Grady Hinchman | Brooklyn | P | A+ | 5-9 | 175 | L | L | 9/10/1981 | 24 | Anderson,Indiana | 2005 | UDFA | | NYM | |
| Ryan Hodinka | State College | P | A- | 6-1 | 175 | L | L | 2/25/1984 | 22 | Chapel Hill,North Carolina | 2006 | UDFA | | STL | |
| Joe Holden | Brooklyn | OF | A+ | 5-11 | 175 | L | R | 4/10/1984 | 22 | Wantagh,New York | 2005 | 21 | 629 | NYM | |
| Andrew Holder | Tri City | OF | A | 6-0 | 210 | R | R | 10/2/1983 | 22 | Austin,Texas | 2006 | 16 | 489 | HOU | |
| Ashley Hooks | State College | P | A | 6-3 | 190 | R | R | 5/18/1983 | 23 | Swainsboro,Georgia | 2005 | UDFA | | STL | |
| Luke Hopkins | Auburn | 1B | A- | 6-2 | 240 | L | R | 4/15/1985 | 21 | Albuquerque,New Mexico | 2006 | 5 | 150 | TOR | |
| Tag Horner | Aberdeen | P | A+ | 6-3 | 220 | L | L | 11/12/1982 | 23 | Pittsburgh,Pennsylvania | 2005 | 41 | 1231 | BAL | |
| Jonathan Hovis | Staten Island | P | AA | 5-11 | 185 | R | R | 12/27/1983 | 22 | Florence,South Carolina | 2008 | UDFA | | NYY | |
| Casey Hudspeth | Tri City | P | AA | 5-11 | 165 | R | R | 10/1/1984 | 21 | Sarasota,Florida | 2006 | 5 | 159 | HOU | |
| David Huff | Mahoning Valley | P | MLB | 6-2 | 185 | B | L | 8/22/1984 | 21 | San Diego,California | 2006 | 1 | 39 | CLE | |
| Jared Hughes | Williamsport | P | MLB | 6-7 | 220 | R | R | 7/4/1985 | 20 | Laguna Beach,California | 2006 | 4 | 110 | PIT | |
| Jake Hurry | Tri City | P | A | 6-3 | 220 | L | L | 8/12/1982 | 23 | East Moline,Illinois | 2005 | 25 | 764 | HOU | |
| Aaron Jackson | Vermont | P | A | 6-0 | 175 | B | R | 3/28/1986 | 20 | St. Augustine,Florida | 2004 | 22 | 654 | MTL | |
| Andy Jackson | Jamestown | P | A+ | 6-1 | 185 | L | L | 8/8/1983 | 22 | Waco,Texas | 2006 | 26 | 785 | FLA | |
| Jason Jacobs | Brooklyn | C | A+ | 6-0 | 200 | R | R | 12/9/1983 | 22 | West Palm Beach,Florida | 2006 | 20 | 604 | NYM | |
| Justin Jacobs | Jamestown | SS | A | 6-2 | 185 | R | R | 7/31/1988 | 17 | West Covina,California | 2006 | 6 | 185 | FLA | |
| Bob Jacobsen | Vermont | P | A+ | | | | | | - | | 1984 | 14 | 363 | LAD | |
| Rolando Japa | Staten Island | P | A+ | 6-1 | 165 | R | R | 1/24/1985 | 21 | San Cristobal,Dominican Republic | 2005 | UDFA | | NYY | |
| Jason Jarrett | Jamestown | P | A+ | 6-5 | 195 | R | R | 5/29/1982 | 24 | West Chester,Pennsylvania | 2005 | 27 | 816 | FLA | |
| Brett Jensen | Oneonta | P | AA | 6-7 | 180 | R | R | 11/29/1983 | 22 | Humboldt,Iowa | 2006 | 14 | 412 | DET | |
| Brian Jeroloman | Auburn | C | AAA | 6-0 | 195 | L | R | 5/10/1985 | 21 | Suffern,New York | 2006 | 6 | 180 | TOR | |
| Jorge Jimenez | Lowell | 1B | AAA | 6-2 | 215 | L | R | 9/12/1984 | 21 | Santurce,Puerto Rico | 2006 | 15 | 463 | BOS | |
| A.J. Johnson | Williamsport | OF | A | 6-1 | 190 | R | R | 9/26/1983 | 22 | Franklin,Tennessee | 2004 | 6 | 172 | PIT | |
| Chris Johnson | Tri City | 3B | MLB | 6-3 | 220 | R | R | 10/1/1984 | 21 | Fort Myers,Florida | 2006 | 4 | 129 | HOU | |
| Kris Johnson | Lowell | P | AAA | 6-4 | 170 | L | L | 10/14/1984 | 21 | West Covina,California | 2006 | 1 | 40 | BOS | |
| Michael Jones | Lowell | 1B | A+ | 6-3 | 220 | L | R | 6/14/1985 | 21 | Moreno Valley,California | 2004 | 25 | 755 | BOS | |
| Dustin Kaats | Jamestown | 2B | A | 6-0 | 180 | R | R | 12/18/1986 | 19 | San Diego,California | 2005 | 47 | 1408 | FLA | |
| Ryan Kalish | Lowell | CF | MLB | 6-1 | 205 | L | L | 3/28/1988 | 18 | Shrewsburg,New Jersey | 2006 | 9 | 283 | BOS | |
| Zach Kalter | Auburn | OF | A | 6-2 | 195 | L | R | 9/19/1984 | 21 | Anaheim,California | 2005 | 20 | 596 | TOR | |
| Justin Keadle | Staten Island | P | A- | 6-2 | 211 | R | R | 12/6/1982 | 23 | Huntington Beach,California | 2005 | 44 | 1333 | NYY | |
| Ryan Keefer | Aberdeen | P | AA | 6-3 | 202 | L | R | 8/10/1981 | 24 | Bloomsburg,Pennsylvania | 2000 | 13 | 384 | BAL | |
| Jared Keel | Williamsport | 3B | A+ | 6-1 | 190 | R | R | 8/3/1984 | 21 | Panama City,Florida | 2006 | 31 | 920 | PIT | |
| Mark Kelly | Batavia | P | A+ | 6-4 | 200 | R | R | 4/18/1984 | 22 | Perth,Australia | 2005 | UDFA | | PHI | |
| David Kennedy | Hudson Valley | OF | A- | 6-2 | 178 | B | R | 7/10/1983 | 22 | Moreno Valley,California | 2005 | UDFA | | TB | |
| Ian Kennedy | Staten Island | P | MLB | 5-11 | 185 | R | R | 12/19/1984 | 21 | Huntington Beach,California | 2006 | 1 | 21 | NYY | |
| Tim Kennelly | Batavia | 3B | AAA | 6-0 | 180 | R | R | 12/5/1986 | 19 | Perth,Australia | 2005 | UDFA | | PHI | |
| Ryan Khoury | Lowell | 3B-SS | AAA | 5-11 | 180 | R | R | 3/19/1984 | 22 | West Jordan,Utah | 2006 | 12 | 373 | BOS | |
| Cole Kimball | Vermont | P | MLB | 6-3 | 240 | R | R | 8/1/1985 | 20 | Brooklyn,New York | 2006 | 12 | 361 | WAN | |
| Bill Kirk | Batavia | P | A | 6-4 | 195 | R | R | 7/7/1983 | 22 | Pine Hill,New Jersey | 2006 | UDFA | | PHI | |
| George Kontos | Staten Island | P | MLB | 6-3 | 215 | R | R | 6/12/1985 | 21 | Lincolnwood,Illinois | 2006 | 5 | 164 | NYY | |
| David Koons | Brooklyn | P | A | 6-1 | 180 | R | R | 3/13/1984 | 22 | Hamilton,Ohio | 2005 | 27 | 809 | NYM | |
| Kevin Kotch | Aberdeen | C | A- | 6-4 | 235 | L | R | 8/31/1984 | 21 | Franklin Park,New Jersey | 2004 | 26 | 769 | BAL | |
| Chris Krawczyk | Oneonta | P | A- | 6-2 | 200 | R | R | 7/21/1983 | 22 | Kansas City,Missouri | 2006 | 22 | 652 | DET | |
| Eric Krebs | Williamsport | P | AA | 6-3 | 205 | R | R | 5/16/1985 | 21 | Tomball,Texas | 2005 | 16 | 481 | PIT | |
| Andy Kroeker | Tri City | C | A- | 6-1 | 205 | L | R | 6/1/1983 | 23 | Clovis,California | 2005 | 17 | 524 | HOU | |
| Chris Kunda | Staten Island | 2B | AAA | 6-1 | 175 | R | R | 11/1/1984 | 21 | Corvallis,Oregon | 2006 | 19 | 584 | NYY | |
| Jeff Kunkel | Oneonta | C | AAA | 5-11 | 200 | B | R | 3/11/1983 | 23 | Olympia Fields,Illinois | 2005 | 37 | 1110 | DET | |
| Albert Laboy | Williamsport | OF | A+ | 6-0 | 170 | R | R | 12/1/1986 | 19 | Boca Raton,Florida | 2005 | 14 | 421 | PIT | |
| Brent Lacy | Mahoning Valley | C | A- | 6-1 | 200 | R | R | 11/22/1982 | 23 | Collinsville,Illinois | | UDFA | | | |
| Thomas Lagreid | Hudson Valley | C | A | 6-1 | 185 | R | R | 10/24/1983 | 22 | Edmonds,Washington | 2003 | 31 | 908 | TB | |
| Matt Lane | Auburn | 1B | A+ | 6-1 | 225 | L | R | 5/23/1984 | 22 | Port Angeles,Washington | 2006 | 11 | 330 | TOR | |
| Matt Lane | State College | P | A | 6-8 | 225 | R | R | 8/17/1984 | 21 | Waconia,Minnesota | 2005 | 16 | 500 | STL | |
| Cory Lapinski | Tri City | P | A- | 6-0 | 210 | R | L | 3/8/1984 | 22 | Niles,Illinois | 2005 | 11 | 344 | HOU | |
| Toni Lara | Staten Island | P | A- | 6-0 | 155 | L | L | 1/31/1984 | 22 | Santo Domingo,Dominican Republic | 2002 | UDFA | | NYY | |
| T.J. Large | Lowell | P | AAA | 6-4 | 185 | R | R | 5/28/1983 | 23 | Largo,Florida | 2005 | 46 | 1390 | BOS | |
| Kyle Larsen | Staten Island | 1B | A | 6-5 | 240 | L | L | 6/30/1983 | 23 | Bellevue,Washington | 2001 | 14 | 432 | NYM | |
| Matt Larson | Hudson Valley | P | A | 6-4 | 215 | R | R | 4/9/1981 | 25 | Newport Beach,California | 2004 | UDFA | | TB | |
| James Lasala | Staten Island | C | A- | 6-1 | 205 | R | R | 5/12/1984 | 22 | New Rochelle,New York | 2006 | 44 | 1331 | NYY | |
| Ryne Lawson | Lowell | P | AA | 6-2 | 180 | L | R | 6/21/1985 | 21 | Scottsboro,Alabama | 2006 | 30 | 913 | BOS | |
| Luis Lebron | Aberdeen | P | AA | 6-0 | 170 | R | R | 3/13/1985 | 21 | El Seybo,Dominican Republic | 2006 | UDFA | | BAL | |
| Maxwell Leon | Oneonta | 2B | AAA | 5-11 | 190 | B | R | 6/27/1984 | 22 | Mexico City,Mexico | 2004 | 50 | 1472 | DET | |
| Chris Leroux | Jamestown | P | MLB | 6-6 | 210 | L | R | 4/14/1984 | 22 | Montreal,Quebec | 2005 | 7 | 216 | FLA | |
| Ross Liersemann | Jamestown | P | A+ | 6-4 | 205 | R | R | 8/14/1983 | 22 | Mansfield,Ohio | 2006 | 18 | 545 | FLA | |
| Chase Lirette | Auburn | P | A | 6-3 | 210 | R | R | 6/9/1985 | 21 | Thibodaux,Louisiana | 2006 | 16 | 480 | TOR | |
| Matt Liuzza | Auburn | C | AAA | 6-0 | 200 | R | R | 2/3/1984 | 22 | Metairie,Louisiana | 2006 | 19 | 570 | TOR | |
| Brett Logan | Vermont | C | AA | 6-2 | 215 | R | R | 12/31/1982 | 23 | Houston,Texas | 2006 | 26 | 781 | WAN | |
| Evan Longoria | Hudson Valley | 3B | MLB | 6-2 | 180 | R | R | 10/7/1985 | 20 | Downey,California | 2006 | 1 | 3 | TB | |
| Derrick Loop | Mahoning Valley | P | AAA | 6-3 | 220 | R | L | 12/11/1983 | 22 | Corona,California | 2006 | 23 | 701 | CLE | |
| Chris Looze | Auburn | 1B | A- | 6-2 | 205 | L | L | 12/23/1981 | 24 | Amherst,Massachusetts | 2005 | 37 | 1106 | TOR | |
| Ronald Lowe | Auburn | P | A | 6-1 | 195 | B | L | 9/6/1983 | 22 | Pittsburgh,Pennsylvania | 2006 | 21 | 630 | TOR | |
| Maiko Loyola | Hudson Valley | OF | A+ | 5-11 | 150 | R | R | 7/19/1985 | 20 | San Cristobal,Dominican Republic | 2002 | UDFA | | PIT | |
| Henry Lozado | Aberdeen | P | A- | 6-3 | 180 | R | R | 1/19/1984 | 22 | Bayamon,Puerto Rico | 2002 | 39 | 1156 | BAL | |
| Chris Lugo | Vermont | P | A+ | 6-1 | 185 | R | R | 11/10/1986 | 19 | Irving,Texas | 2004 | 28 | 834 | MTL | |
| Andy Lytle | Mahoning Valley | SS | A | 6-1 | 165 | R | R | 9/15/1982 | 23 | Denver,Colorado | 2005 | 25 | 754 | CLE | |
| Steve MacFarland | Williamsport | P | A | 6-2 | 215 | R | R | 11/17/1985 | 20 | Newburgh,New York | 2006 | 9 | 260 | PIT | |
| Corey Madden | Jamestown | P | AAA | 6-1 | 195 | R | R | 3/30/1984 | 22 | Anchorage,Alaska | 2006 | 21 | 635 | FLA | |
| Brandon Magee | Auburn | P | AA | 6-5 | 205 | R | R | 7/26/1983 | 22 | Sheboygan,Wisconsin | 2006 | 4 | 120 | TOR | |
| Kenny Maiques | State College | P | AA | 6-1 | 185 | R | R | 6/25/1985 | 21 | Whitter,California | 2005 | 37 | 1130 | STL | |
| Bob Malek | Brooklyn | OF | AAA | 6-1 | 200 | L | R | 7/6/1981 | 24 | Livonia,Michigan | 2002 | 4 | 117 | NYM | |
| Jon Malo | Brooklyn | 3B-2B | AAA | 6-0 | 180 | R | R | 9/29/1983 | 22 | Joliette,Quebec | 2003 | 48 | 1413 | NYM | |
| Rob Marconi | Aberdeen | 3B | A | 6-1 | 200 | R | R | 9/14/1982 | 23 | Lagrange,Illinois | 2004 | 22 | 649 | BAL | |
| Lance Marcum | State College | P | A- | 6-2 | 190 | R | R | 7/5/1983 | 22 | Centralia,Illinois | 2006 | UDFA | | STL | |
| German Marte | Brooklyn | P | AA | 6-1 | 180 | R | R | 4/29/1985 | 21 | San Cristobal,Dominican Republic | 2002 | UDFA | | NYM | |
| Dustin Martin | Brooklyn | RF | AAA | 6-2 | 210 | L | L | 4/4/1984 | 22 | Corpus Christi,Texas | 2006 | 26 | 784 | NYM | |
| J.D. Martin | Mahoning Valley | P | MLB | 6-5 | 175 | R | R | 1/2/1983 | 23 | Ridgecrest,California | 2001 | 1 | 35 | CLE | |
| Anthony Martinez | Aberdeen | 1B | A | 6-3 | 245 | R | R | 12/19/1983 | 22 | Richmond,Virginia | 2006 | 11 | 325 | BAL | |
| Cristhian Martinez | Oneonta | P | MLB | 6-1 | 160 | R | R | 3/6/1982 | 24 | Santo Domingo,Dominican Republic | 2003 | UDFA | | DET | |
| Guillermo Martinez | Jamestown | SS | A- | 6-0 | 180 | R | R | 10/5/1984 | 21 | Miami,Florida | 2006 | 15 | 455 | FLA | |
| Joan Martinez | Brooklyn | C | A+ | 6-0 | 190 | R | R | 5/7/1984 | 22 | Santo Domingo,Dominican Republic | 2001 | UDFA | | SF | |
| Jonathan Martinez | Vermont | P | A- | 6-0 | 170 | B | R | 9/23/1984 | 21 | Barahona,Dominican Republic | 2005 | UDFA | | WAN | |
| Michael Martinez | Vermont | 2B-SS | MLB | 5-9 | 145 | B | R | 9/16/1982 | 23 | Santo Domingo,Dominican Republic | 2006 | UDFA | | WAN | |
| Yoffri Martinez | Williamsport | P | A | 6-3 | 170 | R | R | 12/3/1985 | 20 | Caucagua,Venezuela | 2005 | UDFA | | PIT | |
| Justin Masterson | Lowell | P | MLB | 6-6 | 235 | R | R | 3/22/1985 | 21 | Beavercreek,Ohio | 2006 | 2 | 71 | BOS | |
| John Matulia | Hudson Valley | RF-CF | AAA | 6-0 | 175 | L | L | 8/19/1986 | 19 | Thomaston,Georgia | 2005 | 10 | 298 | TB | |
| Justin Maxwell | Vermont | CF-LF | MLB | 6-5 | 225 | R | R | 11/6/1983 | 22 | Olney,Maryland | 2005 | 4 | 114 | WAN | |
| James Mayer | Hudson Valley | SS | A | 5-11 | 165 | R | R | 3/8/1984 | 22 | Johnston,Pennsylvania | 2006 | 30 | 889 | TB | |
| Cesar Mayora | Tri City | P | A | 6-2 | 185 | R | R | 1/1/1984 | 22 | Catia la Mar,Venezuela | 2005 | UDFA | | HOU | |
| Matt McBride | Mahoning Valley | RF-1B | MLB | 6-2 | 215 | R | R | 5/23/1985 | 21 | Bethlehem,Pennsylvania | 2006 | 2 | 75 | CLE | |
| Sean McCraw | Brooklyn | C | AA | 6-0 | 185 | L | R | 3/11/1986 | 20 | Alvin,Texas | 2005 | 8 | 239 | NYM | |
| Bob McCrory | Aberdeen | P | MLB | 6-0 | 205 | R | R | 5/3/1982 | 24 | Kosciusko,Mississippi | 2003 | 4 | 104 | BAL | |
| Daniel McCutchen | Staten Island | P | MLB | 6-1 | 195 | R | R | 9/26/1982 | 23 | McKinney,Texas | 2006 | 13 | 404 | NYY | |
| Spike McDougall | Jamestown | SS | AA | 6-3 | 180 | R | R | 2/7/1984 | 22 | San Ramon,California | 2006 | 39 | 1175 | FLA | |
| Shawn McGill | Batavia | C | AAA | 6-4 | 195 | R | R | 2/29/1984 | 22 | Wakefield,Rhode Island | 2006 | 23 | 697 | PHI | |
| Patrick McGuigan | Auburn | P | A+ | 6-1 | 178 | | R | 9/8/1984 | 21 | Honolulu,Hawaii | 2006 | 27 | 810 | TOR | |
| Casey McKenzie | Auburn | P | A | 6-3 | 206 | R | R | 7/26/1982 | 23 | Lewisville,Texas | 2004 | 27 | 807 | TOR | |
| Brett McMillan | Vermont | 1B-3B | A+ | 6-5 | 225 | L | R | 11/18/1983 | 22 | Las Vegas,Nevada | 2006 | 14 | 421 | WAN | |
| Mark Melancon | Staten Island | P | MLB | 6-1 | 175 | R | R | 3/28/1985 | 21 | Wheat Ridge,Colorado | 2006 | 9 | 284 | NYY | |
| Hunter Mense | Jamestown | OF | AAA | 6-0 | 195 | L | L | 8/30/1984 | 21 | Liberty,Missouri | 2006 | 17 | 515 | FLA | |
| Jacobo Meque | Vermont | P | AAA | 6-2 | 200 | L | L | 10/1/1983 | 22 | Villa Altagralia,Dominican Republic | 2000 | UDFA | | BAL | |
| Nathan Messner | Jamestown | 3B | A+ | 6-3 | 210 | R | R | 11/21/1985 | 20 | Williamsport,Pennsylvania | 2004 | 18 | 548 | FLA | |
| Matt Meyer | Mahoning Valley | P | AAA | 6-4 | 210 | L | L | 1/17/1985 | 21 | Rochester,Minnesota | 2006 | 15 | 461 | CLE | |
| Jay Miller | Batavia | OF | A+ | 5-10 | 185 | R | R | 8/11/1983 | 22 | Seattle,Washington | 2006 | 17 | 517 | PHI | |
| Gus Milner | Batavia | OF | AAA | 6-3 | 190 | R | R | 4/21/1984 | 22 | Olathe,Kansas | 2006 | 14 | 427 | PHI | |
| Dan Miltenberger | Mahoning Valley | P | A- | 6-0 | 181 | R | R | 9/15/1983 | 22 | Lakewood,California | 2006 | 46 | 1385 | CLE | |
| Jeremy Mizell | Brooklyn | P | A | 6-0 | 177 | R | R | 6/19/1983 | 23 | Baton Rouge,Louisiana | 2006 | UDFA | | NYM | |
| Dustin Molleken | Williamsport | P | AAA | 6-4 | 210 | L | R | 8/21/1984 | 21 | Regina,Saskatchewan | 2003 | 15 | 435 | PIT | |
| Lucas Montero | Mahoning Valley | CF | AA | 5-11 | 180 | B | R | 10/18/1984 | 21 | San Cristobal,Dominican Republic | 2006 | UDFA | | CLE | |
| Cody Montgomery | Batavia | 3B | A- | 6-3 | 220 | B | R | 10/28/1983 | 22 | Boulder,Colorado | 2006 | 16 | 487 | PHI | |
| Jeff Moore | Aberdeen | P | A+ | 6-1 | 195 | R | R | 3/26/1983 | 23 | Asheville,North Carolina | 2005 | 17 | 513 | BAL | |
| Douglas Morales | Batavia | OF | A+ | 6-0 | 180 | L | L | 6/22/1986 | 20 | Masaya,Nicaragua | 2005 | UDFA | | PHI | |
| Junior Moreno | Lowell | C | AA | 6-1 | 185 | R | R | 2/27/1985 | 21 | Santo Domingo,Dominican Republic | 2005 | UDFA | | BOS | |
| Nick Moresi | Tri City | OF | AA | 6-4 | 180 | R | R | 11/22/1984 | 21 | Concord,California | 2006 | 3 | 99 | HOU | |
| Adam Morris | State College | 3B | A- | 6-3 | 190 | R | R | 12/1/1982 | 23 | Spring,Texas | 2005 | 47 | 1420 | STL | |
| Cory Morris | Aberdeen | P | AAA | 6-3 | 205 | R | R | 6/2/1979 | 27 | Beckville,Texas | 2001 | 15 | 443 | BAL | |
| Logan Morrison | Jamestown | LF | MLB | 6-4 | 245 | L | L | 8/25/1987 | 18 | Kansas City,Missouri | 2005 | 22 | 666 | FLA | |
| Ryan Morse | Hudson Valley | P | AA | 6-4 | 205 | L | L | 5/21/1983 | 23 | St. Cloud,Minnesota | 2005 | 13 | 388 | TB | |
| Jason Motte | State College | P | MLB | 6-0 | 200 | R | R | 6/22/1982 | 24 | Port Huron,Michigan | 2003 | 19 | 575 | STL | |
| Greg Mullens | Brooklyn | P | A | 6-4 | 219 | R | R | 1/30/1985 | 21 | Lindsay,Ontario | 2005 | UDFA | | NYM | |
| David Munoz | Williamsport | SS | A+ | 5-10 | 175 | R | R | 9/26/1979 | 26 | Yorba Linda,California | 2005 | UDFA | | PIT | |
| Jose Munoz | Jamestown | IF | AAA | 5-10 | 160 | R | R | 7/1/1985 | 20 | Fontana,California | 2006 | UDFA | | FLA | |
| Kyle Mura | State College | 3B | AA | 6-4 | 215 | R | R | 11/24/1984 | 21 | San Diego,California | 2006 | 42 | 1275 | STL | |
| Joseph Muro | Hudson Valley | P | A- | 6-0 | 161 | R | R | 2/16/1984 | 22 | La Mirada,California | 2004 | 9 | 255 | TB | |
| Daniel Murphy | Brooklyn | 2B | MLB | 6-1 | 215 | L | R | 4/1/1985 | 21 | Jacksonville,Florida | 2006 | 13 | 394 | NYM | |
| Ivan Naccarata | Brooklyn | 2B | A+ | 6-0 | 190 | L | R | 2/26/1982 | 24 | Montreal,Quebec | 2002 | 21 | 641 | HOU | |
| Brett Nagy | Hudson Valley | P | A- | 6-1 | 190 | R | R | 11/10/1981 | 24 | Jacksonville,Florida | 2005 | UDFA | | TB | |
| Phil Napolitan | Oneonta | P | A | 6-1 | 185 | R | R | 1/29/1982 | 24 | Page,Arizona | 2005 | UDFA | | DET | |
| Joel Naughton | Batavia | C | AAA | 6-1 | 178 | L | R | 8/27/1986 | 19 | Melbourne,Australia | 2005 | UDFA | | PHI | |
| Kristopher Negron | Lowell | SS-CF | MLB | 6-0 | 180 | R | R | 2/1/1986 | 20 | Vacaville,California | 2006 | 7 | 223 | BOS | |
| Jim Negrych | Williamsport | 2B | AAA | 5-10 | 180 | L | R | 3/2/1985 | 21 | Buffalo,New York | 2006 | 6 | 170 | PIT | |
| Nathan Nery | Aberdeen | P | AA | 6-4 | 212 | R | L | 8/25/1985 | 20 | Atlanta,Georgia | 2006 | 18 | 535 | BAL | |
| Jordan Newton | Oneonta | C | A+ | 5-10 | 185 | R | R | 8/29/1985 | 20 | Elizabethtown,Kentucky | 2006 | 6 | 172 | DET | |
| Patrick Nichols | Vermont | C | AAA | 6-2 | 215 | R | R | 9/12/1984 | 21 | Chesapeake,Virginia | 2006 | 16 | 481 | WAN | |
| Jonah Nickerson | Oneonta | P | AA | 6-1 | 195 | R | R | 3/9/1985 | 21 | Casper,Wyoming | 2006 | 7 | 202 | DET | |
| Javier Nieves | Auburn | C | A- | 5-11 | 160 | R | R | 2/5/1984 | 22 | Guigue,Venezuela | 2005 | UDFA | | TOR | |
| Tyler Norrick | State College | P | AAA | 6-3 | 190 | L | L | 9/27/1983 | 22 | Festus,Missouri | 2006 | 6 | 196 | STL | |
| Bud Norris | Tri City | P | MLB | 6-0 | 195 | R | R | 3/2/1985 | 21 | Greenbrae,California | 2006 | 6 | 189 | HOU | |
| Tim Norton | Staten Island | P | AAA | 6-5 | 230 | R | R | 5/23/1983 | 23 | Franklin,Massachusetts | 2006 | 7 | 224 | NYY | |
| Yunior Novoa | Vermont | P | AAA | 6-3 | 170 | L | L | 9/11/1984 | 21 | Las Matas de Farfan,Dominican Republic | 2002 | UDFA | | CHW | |
| Dan O'Brien | Auburn | P | A | 5-10 | 190 | L | L | 9/12/1984 | 21 | Chicago,Illinois | 2006 | 8 | 240 | TOR | |
| Matt O'Brien | Oneonta | P | AAA | 6-3 | 215 | R | R | 8/10/1982 | 23 | Royal Palm Beach,Florida | 2004 | 15 | 433 | DET | |
| Tim O'Brien | Staten Island | 1B-3B | A+ | 6-2 | 210 | R | R | 12/22/1983 | 22 | Fresno,California | 2006 | 37 | 1124 | NYY | |
| Blake Ochoa | Jamestown | 1B | AAA | 6-0 | 180 | R | R | 9/5/1985 | 20 | Maracay,Venezuela | 2005 | UDFA | | FLA | |
| Cristian Ogando | Vermont | OF | A- | 6-2 | 175 | R | R | 8/5/1986 | 19 | Bani,Dominican Republic | 2005 | UDFA | | WAN | |
| Edgar Omana | Staten Island | P | A- | 6-3 | 175 | L | L | 9/12/1983 | 22 | Maracaibo,Venezuela | 2001 | UDFA | | NYY | |
| Louis Ott | Oneonta | 3B | AA | 6-0 | 185 | B | R | 2/22/1985 | 21 | Marin,California | 2005 | 13 | 390 | DET | |
| Adam Ottavino | State College | P | MLB | 6-5 | 230 | L | R | 11/22/1985 | 20 | New York,New York | 2006 | 1 | 30 | STL | |
| Seth Overbey | Auburn | P | AA | 6-2 | 175 | L | R | 4/30/1984 | 22 | Layton,Utah | 2006 | 15 | 450 | TOR | |
| Ryan Owen | Hudson Valley | P | A+ | 6-4 | 200 | L | L | 7/26/1984 | 21 | San Dimas,California | 2006 | 16 | 469 | TB | |
| Joel Pacheco | Aberdeen | 1B | A- | 6-2 | 190 | R | R | 3/2/1982 | 24 | Santo Domingo,Dominican Republic | 2002 | UDFA | | BAL | |
| Josh Papelbon | Lowell | P | AA | 6-1 | 210 | R | R | 6/24/1983 | 23 | Baton Rouge,Louisiana | 2006 | 48 | 1443 | BOS | |
| Jordan Parraz | Tri City | RF | AAA | 6-3 | 190 | R | R | 10/8/1984 | 21 | Las Vegas,Nevada | 2004 | 3 | 94 | HOU | |
| Rhett Parrott | State College | P | AAA | 6-2 | 180 | R | R | 11/12/1979 | 26 | Dalton,Georgia | 2001 | 9 | 284 | STL | |
| Paul Patterson | Staten Island | P | A | 6-7 | 200 | R | R | 5/8/1984 | 22 | Nicholasville,Kentucky | 2006 | 16 | 494 | NYY | |
| Ian Paxton | Hudson Valley | C | AA | 6-1 | 210 | R | R | 9/4/1983 | 22 | Springfield,Missouri | 2006 | UDFA | | TB | |
| John Peabody | Williamsport | OF | A- | 6-4 | 215 | R | R | 8/24/1985 | 20 | Queens,New York | 2003 | 10 | 285 | PIT | |
| Kyle Pearson | Williamsport | P | AA | 6-1 | 180 | R | R | 10/8/1984 | 21 | Panama City,Florida | 2003 | 4 | 105 | PIT | |
| Mario Pena | Lowell | P | AAA | 6-2 | 150 | L | L | 12/7/1984 | 21 | Managua,Nicaragua | 2002 | UDFA | | BOS | |
| Wily Mo Pena | Lowell | DH-LF | MLB | 6-3 | 215 | R | R | 1/13/1982 | 24 | Lagunda Salada,Dominican Republic | 1998 | UDFA | | NYY | |
| Zach Penprase | Batavia | SS | A | 6-2 | 180 | R | R | 2/16/1985 | 21 | Moorpark,California | 2006 | 13 | 397 | PHI | |
| Alexander Peralta | Williamsport | IF | A- | 5-11 | 170 | R | R | 12/27/1984 | 21 | Cabrera,Dominican Republic | 2002 | UDFA | | PIT | |
| Yader Peralta | Vermont | P | AA | 6-1 | 170 | R | R | 2/22/1986 | 20 | Santo Domingo,Dominican Republic | 2003 | UDFA | | BOS | |
| Smelin Perez | Williamsport | 2B | AA | 5-10 | 150 | B | R | 8/26/1985 | 20 | Las Matas de Farfan,Dominican Republic | 2005 | UDFA | | PIT | |
| Wilfrido Perez | Aberdeen | P | AA | 6-1 | 183 | B | R | 8/12/1984 | 21 | Nagua,Dominican Republic | 2005 | UDFA | | BAL | |
| Matt Perks | Vermont | P | A | 6-7 | 200 | R | R | 8/20/1985 | 20 | New Brunswick,New Jersey | 2004 | 18 | 534 | MTL | |
| Nick Pesco | Mahoning Valley | P | AAA | 6-6 | 200 | R | R | 9/17/1983 | 22 | Berkeley,California | 2002 | 25 | 754 | CLE | |
| Nick Peterson | Staten Island | P | A | 6-3 | 210 | R | R | 10/3/1984 | 21 | Odessa,Florida | 2006 | 12 | 374 | NYY | |
| Dan Pfau | Vermont | P | A+ | 6-0 | 175 | L | L | 6/12/1984 | 22 | Plainfield,New Jersey | 2006 | 27 | 811 | WAN | |
| Ben Pfinsgraff | Batavia | P | A+ | 6-0 | 180 | R | R | 11/13/1983 | 22 | Pittsburgh,Pennsylvania | 2006 | 22 | 667 | PHI | |
| Gregory Picart | Williamsport | SS-3B | AAA | 5-11 | 155 | B | R | 9/25/1985 | 20 | Guayama,Puerto Rico | 2003 | 23 | 675 | PIT | |
| Zach Piccola | Oneonta | P | A+ | 6-4 | 240 | R | L | 3/27/1985 | 21 | Nashua,New Hampshire | 2006 | 9 | 262 | DET | |
| Esequier Pie | Jamestown | P | A- | 6-2 | 165 | R | R | 3/6/1984 | 22 | San Pedro de Macoris,Dominican Republic | 2000 | UDFA | | FLA | |
| Mike Pierce | Aberdeen | C | AA | 6-3 | 185 | R | R | 4/19/1984 | 22 | Fresno,California | 2006 | 28 | 835 | BAL | |
| Wilmer Pino | Staten Island | 2B | A | 5-11 | 165 | R | R | 1/23/1986 | 20 | San Felix,Venezuela | 2005 | UDFA | | NYY | |
| Anthony Pluta | Williamsport | P | A+ | 6-2 | 190 | R | R | 10/28/1982 | 23 | Visalia,California | 2000 | 3 | 97 | HOU | |
| Celson Polanco | Tri City | P | AA | 6-5 | 200 | R | R | 8/28/1984 | 21 | El Limon,Dominican Republic | 2005 | UDFA | | HOU | |
| Francis Poni | Williamsport | C | A | 6-0 | 200 | R | R | 8/1/1983 | 22 | Bellflower,California | 2002 | 29 | 853 | PIT | |
| Kieron Pope | Aberdeen | LF | A | 6-1 | 195 | R | R | 10/3/1986 | 19 | Gray,Georgia | 2005 | 4 | 123 | BAL | |
| Nelson Portillo | Brooklyn | P | A | 5-11 | 215 | R | R | 9/8/1985 | 20 | Valencia,Venezuela | 2006 | UDFA | | NYM | |
| Jon Poterson | Staten Island | C | A | 6-1 | 215 | B | R | 2/10/1986 | 20 | Chandler,Arizona | 2004 | 1 | 37 | NYY | |
| Alex Presley | Williamsport | LF | MLB | 5-9 | 180 | L | L | 7/25/1985 | 20 | Monroe,Louisiana | 2006 | 8 | 230 | PIT | |
| Ritchie Price | Brooklyn | IF | A- | 6-2 | 180 | B | R | 7/13/1983 | 22 | Palo Alto,California | 2006 | 18 | 544 | NYM | |
| Todd Privett | Brooklyn | P | A | 6-0 | 185 | L | L | 4/22/1986 | 20 | Salt Lake City,Utah | 2006 | 14 | 424 | NYM | |
| Stephen Puhl | Brooklyn | C | A | 6-0 | 195 | B | R | 7/6/1984 | 21 | Houston,Texas | 2006 | 17 | 514 | NYM | |
| Matt Pulley | Aberdeen | 3B | AA | 6-3 | 200 | L | R | 5/15/1985 | 21 | Woodland,California | 2003 | 12 | 344 | BAL | |
| David Qualben | Tri City | P | A+ | 6-3 | 215 | L | L | 7/29/1985 | 20 | Brooklyn,New York | 2006 | 7 | 219 | HOU | |
| Alberto Quintana | Auburn | C | AAA | 6-0 | 200 | R | R | 11/9/1982 | 23 | Los Angeles,California | 2005 | 40 | 1195 | TOR | |
| Cesar Quintero | Tri City | C | A+ | 6-1 | 200 | R | R | 11/16/1982 | 23 | Chitre,Panama | 2001 | UDFA | | SEA | |
| Matt Rainey | Brooklyn | P | A- | 6-0 | 200 | R | R | 4/21/1984 | 22 | San Antonio,Texas | 2004 | 32 | 945 | TB | |
| Russell Raley | Staten Island | IF | AA | 5-10 | 175 | R | R | 12/30/1983 | 22 | San Antonio,Texas | 2006 | 21 | 644 | NYY | |
| Jim Rapoport | State College | CF-RF | AAA | 6-0 | 195 | L | L | 6/25/1985 | 21 | Westlake,California | 2006 | 35 | 1066 | STL | |
| Chris Raulinaitis | Batavia | P | A | 6-3 | 235 | R | R | 11/25/1983 | 22 | Sacramento,California | 2004 | 28 | 842 | PHI | |
| John Raynor | Jamestown | OF | MLB | 6-2 | 185 | R | R | 1/4/1984 | 22 | Memphis,Tennessee | 2006 | 9 | 275 | FLA | |
| Dustin Realini | Mahoning Valley | 3B | A+ | 6-2 | 200 | R | R | 5/14/1984 | 22 | Redwood City,California | 2006 | 28 | 851 | CLE | |
| Chris Reddout | Auburn | P | A | 6-6 | 215 | L | L | 12/15/1982 | 23 | Midland,Texas | 2006 | UDFA | | TOR | |
| Ryan Reid | Hudson Valley | P | MLB | 6-0 | 215 | L | R | 4/24/1985 | 21 | Portland,Maine | 2006 | 7 | 199 | TB | |
| Michael Repole | State College | P | A- | 6-5 | 225 | R | R | 7/12/1983 | 22 | Pittsburgh,Pennsylvania | 2005 | 14 | 440 | STL | |
| Angel Reyes | Oneonta | IF | A- | 6-3 | 180 | R | R | 1/9/1984 | 22 | Santo Domingo,Dominican Republic | 2002 | UDFA | | DET | |
| Angel Reyes | Staten Island | P | A | 5-11 | 170 | L | L | 1/8/1987 | 19 | Peravia,Dominican Republic | 2006 | UDFA | | NYY | |
| Christian Reyes | State College | C | A | 6-1 | 215 | R | R | 4/24/1986 | 20 | Caguas,Puerto Rico | 2006 | 27 | 826 | STL | |
| Jorge Reyes | Brooklyn | P | A | 6-4 | 170 | R | R | 5/15/1984 | 22 | Altagracia,Dominican Republic | 2005 | UDFA | | NYM | |
| Dustin Richardson | Lowell | P | MLB | 6-5 | 195 | L | L | 1/9/1984 | 22 | Newton,Kansas | 2006 | 5 | 163 | BOS | |
| Jorge Riera | Mahoning Valley | P | A | 6-0 | 170 | R | R | 6/17/1983 | 23 | Valencia,Venezuela | 2005 | UDFA | | CLE | |
| Daniel Rios | Williamsport | 1B | A- | 6-4 | 184 | L | L | 7/10/1985 | 20 | Orange,California | 2005 | 19 | 571 | PIT | |
| Luis Rivera | Brooklyn | IF | AAA | 6-1 | 183 | R | R | 1/25/1984 | 22 | San Juan,Puerto Rico | 2005 | UDFA | | CHC | |
| Joshua Roberts | Mahoning Valley | C | A | 6-1 | 176 | L | R | 7/17/1986 | 19 | Ipswich,Australia | 2003 | UDFA | | CLE | |
| Tim Robertson | Oneonta | P | A- | 6-2 | 215 | R | R | 12/27/1982 | 23 | Huntington Beach,California | 2005 | 31 | 930 | DET | |
| Claudio Rodriguez | Hudson Valley | P | A+ | 6-5 | 220 | R | R | 6/29/1983 | 23 | Bonao,Dominican Republic | 2002 | UDFA | | TB | |
| Dionis Rodriguez | Williamsport | P | A+ | 6-2 | 181 | R | R | 2/8/1986 | 20 | Jicome,Dominican Republic | 2006 | UDFA | | PIT | |
| Edward Rodriguez | Auburn | P | AA | 6-3 | 170 | R | R | 10/6/1984 | 21 | Esperanza,Dominican Republic | 2002 | UDFA | | TOR | |
| Joaquin Rodriguez | Brooklyn | SS | A | 6-4 | 180 | R | R | 10/29/1984 | 21 | Miami,Florida | 2006 | UDFA | | NYM | |
| Josh Rodriguez | Mahoning Valley | SS | MLB | 6-0 | 180 | R | R | 12/18/1984 | 21 | Houston,Texas | 2006 | 2 | 57 | CLE | |
| Tanner Rogers | Jamestown | C | AA | 6-0 | 180 | R | R | 1/11/1985 | 21 | Englewood,Colorado | 2003 | 8 | 233 | FLA | |
| Heath Rollins | Hudson Valley | P | AAA | 6-1 | 190 | R | R | 5/25/1985 | 21 | Florence,South Carolina | 2006 | 11 | 319 | TB | |
| Celso Rondon | Hudson Valley | P | A | 6-0 | 160 | R | R | 4/7/1984 | 22 | Cumana,Venezuela | 2001 | UDFA | | NYM | |
| Sean Rooney | Vermont | C | AAA | 5-10 | 205 | B | R | 4/12/1986 | 20 | Yorba Linda,California | 2006 | 8 | 241 | WAN | |
| Orlando Rosales | Tri City | CF | AA | 5-8 | 180 | R | R | 4/9/1984 | 22 | Dade City,Florida | 2006 | 19 | 579 | HOU | |
| Tony Roth | Staten Island | 3B | AAA | 6-0 | 175 | R | R | 10/20/1982 | 23 | Omaha,Nebraska | 2005 | UDFA | | NYY | |
| Brandon Rousseve | Hudson Valley | SS | A | 6-1 | 175 | R | R | 8/4/1984 | 21 | New Orleans,Louisiana | 2003 | 45 | 1322 | TB | |
| Billy Rowell | Aberdeen | 1B | AA | 6-5 | 215 | L | R | 9/10/1988 | 17 | Sewell,New Jersey | 2006 | 1 | 9 | BAL | |
| Ryan Royster | Hudson Valley | OF | AA | 6-2 | 205 | R | R | 7/25/1986 | 19 | Eugene,Oregon | 2004 | 6 | 165 | TB | |
| Jacob Ruckle | Brooklyn | P | AA | 6-1 | 180 | R | R | 5/27/1986 | 20 | Mohave Valley,Arizona | 2004 | 41 | 1214 | NYM | |
| Ben Rulon | Hudson Valley | P | A- | 6-5 | 210 | L | L | 7/4/1985 | 20 | Roseville,Illinois | 2005 | 38 | 1138 | TB | |
| Brendan Ryan | State College | SS | MLB | 6-2 | 195 | R | R | 3/26/1982 | 24 | Los Angeles,California | 2003 | 7 | 215 | STL | |
| Kyle Sadlowski | State College | P | AA | 6-3 | 190 | R | R | 6/19/1984 | 22 | Reading,Pennsylvania | 2005 | 34 | 1040 | STL | |
| Kent Sakamoto | Williamsport | 1B | A+ | 6-0 | 215 | R | R | 11/3/1983 | 22 | Bakersfield,California | 2006 | 12 | 350 | PIT | |
| Chris Salamida | Tri City | P | AA | 6-0 | 180 | L | L | 5/7/1984 | 22 | Watervliet,New York | 2006 | 13 | 399 | HOU | |
| Jose Salazar | State College | IF | AAA | 5-10 | 170 | L | R | 12/30/1983 | 22 | Monclova,Mexico | 2006 | UDFA | | STL | |
| Kevin Salmon | Batavia | P | A | 6-3 | 200 | R | R | 11/9/1983 | 22 | Brentwood,New York | 2006 | UDFA | | PHI | |
| Erick San Pedro | Vermont | C | AAA | 6-0 | 205 | R | R | 10/5/1983 | 22 | Hialeah,Florida | 2004 | 2 | 54 | MTL | |
| Jonathan Sanchez | Brooklyn | P | A | 6-1 | 211 | L | L | 9/3/1985 | 20 | La Vega,Dominican Republic | 2006 | UDFA | | NYM | |
| Willian Sandoval | State College | IF | A | 5-10 | 170 | B | R | 12/27/1985 | 20 | Maracay,Venezuela | 2006 | UDFA | | STL | |
| Moises Santa | Lowell | OF | A- | 6-0 | 180 | R | R | 12/13/1985 | 20 | Azua,Dominican Republic | 2005 | UDFA | | BOS | |
| Maxwell Sapp | Tri City | C | A | 6-2 | 220 | L | R | 2/21/1988 | 18 | Orlando,Florida | 2006 | 1 | 23 | HOU | |
| Victor Sauceda | State College | 2B-SS | AAA | 6-0 | 180 | B | R | | - | | 1996 | 82 | 1705 | TB | |
| Will Savage | Batavia | P | AAA | 6-4 | 210 | R | R | 8/25/1984 | 21 | West Hills,California | 2006 | 26 | 787 | PHI | |
| Drew Saylor | Jamestown | IF | A- | 5-10 | 184 | R | R | 1/9/1984 | 22 | Barberton,Ohio | 2006 | 13 | 395 | FLA | |
| Jon Schemmel | Brooklyn | 2B | AAA | 5-11 | 190 | R | R | 1/27/1983 | 23 | Topeka,Kansas | 2005 | UDFA | | NYM | |
| Andy Schindling | Aberdeen | P | A | 6-2 | 165 | R | R | 8/15/1986 | 19 | Silver Spring,Maryland | 2004 | 16 | 469 | BAL | |
| Kyle Schmidt | Aberdeen | P | AA | 6-3 | 220 | R | R | 8/25/1983 | 22 | Palm Harbor,Florida | 2004 | 14 | 409 | BAL | |
| Brian Schroeder | State College | P | A | 6-1 | 205 | L | L | 11/19/1984 | 21 | Alexandria,Virginia | 2006 | 33 | 1006 | STL | |
| Jason Schutt | Mahoning Valley | P | A | 6-3 | 225 | R | R | 12/11/1983 | 22 | Jamestown,North Dakota | 2005 | 10 | 304 | CLE | |
| Jared Schweitzer | State College | 3B | A | 6-1 | 185 | R | R | 10/13/1983 | 22 | Edmonton,Alberta | 2006 | 30 | 916 | STL | |
| Shawn Scobee | Auburn | OF | A- | 6-1 | 210 | R | R | 10/11/1984 | 21 | Sacramento,California | 2006 | 14 | 420 | TOR | |
| Deik Scram | Oneonta | RF-LF | AAA | 6-2 | 180 | L | R | 2/1/1984 | 22 | Arkansas City,Kansas | 2006 | 18 | 532 | DET | |
| Ryan Searage | Williamsport | OF | A- | 5-11 | 185 | R | R | 11/23/1982 | 23 | West Islip,New York | 2005 | 18 | 541 | PIT | |
| Luis Segovia | Lowell | SS | AA | 5-10 | 150 | B | R | 7/19/1986 | 19 | Barquisimeto,Venezuela | 2005 | UDFA | | BOS | |
| Emmanuel Sena | Auburn | 2B | A+ | 6-1 | 150 | B | R | 10/15/1984 | 21 | Haina,Dominican Republic | 2001 | UDFA | | TOR | |
| Ted Serro | Auburn | P | A+ | 6-4 | 205 | R | R | 10/2/1984 | 21 | Brooklyn,New York | 2006 | 40 | 1200 | TOR | |
| Corey Shafer | Aberdeen | C | A | 6-2 | 215 | L | L | 12/17/1982 | 23 | Oklahoma City,Oklahoma | 2002 | 2 | 45 | BAL | |
| Michael Sharpe | Brooklyn | OF | A- | 6-0 | 190 | L | R | 3/10/1983 | 23 | East Meadow,New York | 2005 | 35 | 1049 | NYM | |
| Ricky Shefka | Vermont | P | A | 6-2 | 200 | B | R | 1/16/1984 | 22 | Kinston,North Carolina | 2005 | 20 | 594 | WAN | |
| Sergio Silva | Williamsport | P | A | 6-4 | 205 | R | R | 12/22/1981 | 24 | Ciudad Constitucion,Mexico | 2003 | 8 | 225 | PIT | |
| Pedro Silveren | Aberdeen | 2B | A | 6-0 | 160 | R | R | 9/2/1984 | 21 | San Pedro de Macoris,Dominican Republic | 2006 | UDFA | | BAL | |
| Rigoberto Silverio | Jamestown | 2B | A- | 6-1 | 156 | B | R | 7/2/1986 | 19 | Santo Domingo,Dominican Republic | 2005 | UDFA | | FLA | |
| Jeramy Simmons | Brooklyn | P | AA | 6-0 | 200 | R | R | 9/30/1982 | 23 | Jacksonville,Florida | 2005 | 36 | 1079 | NYM | |
| Brett Sinkbeil | Jamestown | P | MLB | 6-4 | 185 | R | R | 12/26/1984 | 21 | Sand Springs,Oklahoma | 2006 | 1 | 19 | FLA | |
| Yonathan Sivira | State College | OF | A | 6-1 | 165 | R | R | 1/25/1984 | 22 | Barquisimeto,Venezuela | 2002 | UDFA | | STL | |
| Scott Sizemore | Oneonta | 3B | MLB | 6-0 | 185 | R | R | 1/4/1985 | 21 | Virginia Beach,Virginia | 2006 | 5 | 142 | DET | |
| James Skelton | Oneonta | C | AAA | 5-11 | 165 | L | R | 10/28/1985 | 20 | West Covina,California | 2004 | 14 | 403 | DET | |
| Andrew Smith | Tri City | IF | A- | 6-1 | 190 | R | R | 1/10/1984 | 22 | Glendale,Arizona | 2006 | UDFA | | HOU | |
| Donnie Smith | State College | P | A+ | 6-2 | 210 | R | R | 1/14/1983 | 23 | Portsmouth,Virginia | 2004 | 4 | 120 | STL | |
| Greg Smith | Williamsport | OF | A- | 6-0 | 205 | L | L | 2/20/1984 | 22 | Weymouth,Massachusetts | 2006 | 14 | 410 | PIT | |
| Joe Smith | Brooklyn | P | MLB | 6-2 | 205 | R | R | 3/22/1984 | 22 | Cincinnati,Ohio | 2006 | 3 | 94 | NYM | |
| Kevin Smith | Staten Island | 3B | AA | 6-1 | 215 | L | R | 1/15/1984 | 22 | | 2006 | 39 | 1184 | NYY | |
| Paul Smyth | Lowell | OF | A | 6-2 | 205 | R | R | 4/25/1983 | 23 | Brawley,California | 2006 | 23 | 703 | BOS | |
| Brandon Snyder | Aberdeen | 3B-1B | MLB | 6-2 | 205 | R | R | 11/23/1986 | 19 | Las Vegas,Nevada | 2005 | 1 | 13 | BAL | |
| Donovan Solano | State College | 2B | MLB | 5-10 | 165 | R | R | 12/17/1987 | 18 | Barranquilla,Colombia | 2005 | UDFA | | STL | |
| Alay Soler | Brooklyn | P | MLB | 6-1 | 240 | R | R | 10/9/1979 | 26 | Pinar del Rio,Cuba | 2006 | UDFA | | NYM | |
| Julio Soriano | Aberdeen | P | A | 6-2 | 167 | R | R | 9/24/1983 | 22 | San Pedro de Macoris,Dominican Republic | 2001 | UDFA | | BAL | |
| Alexis Sosa | Jamestown | P | A | 6-1 | 160 | B | L | 6/25/1983 | 23 | Higuey,Dominican Republic | 2001 | UDFA | | FLA | |
| Edgar Soto | Staten Island | P | A+ | 5-11 | 175 | L | L | 12/28/1984 | 21 | Maracaibo,Venezuela | 2001 | UDFA | | NYY | |
| Nathan Southard | State College | OF | A+ | 5-10 | 190 | R | R | 10/27/1983 | 22 | Metairie,Louisiana | 2006 | 17 | 526 | STL | |
| Josh Sowers | Auburn | P | A+ | 6-1 | 170 | R | R | 5/17/1983 | 23 | Louisville,Kentucky | 2005 | 10 | 296 | TOR | |
| Ricky Sparks | Brooklyn | P | A | 6-5 | 205 | R | R | 10/10/1984 | 21 | Delta,Colorado | 2006 | 30 | 904 | NYM | |
| Jack Spradlin | Vermont | P | AAA | 6-2 | 170 | R | L | 9/23/1984 | 21 | Las Vegas,Nevada | 2005 | 8 | 234 | WAN | |
| Matt Spring | Hudson Valley | C | AAA | 6-2 | 215 | R | R | 11/7/1984 | 21 | Phoenix,Arizona | 2004 | 4 | 105 | TB | |
| Ryan Stadanlick | Aberdeen | P | A- | 6-3 | 210 | R | R | 8/3/1984 | 21 | Levittown,Pennsylvania | 2005 | 10 | 303 | BAL | |
| Nathan Starner | Auburn | P | AA | 6-2 | 190 | L | L | 5/29/1984 | 22 | Hanover,Pennsylvania | 2006 | UDFA | | TOR | |
| Brian Steinocher | Lowell | P | A+ | 6-1 | 195 | R | R | 8/1/1984 | 21 | Houston,Texas | 2006 | 21 | 643 | BOS | |
| Jedidiah Stephen | Aberdeen | 3B | AA | 6-2 | 190 | R | R | 4/30/1984 | 22 | Caldwell,Ohio | 2006 | 8 | 235 | BAL | |
| Quinn Stewart | Hudson Valley | OF | A+ | 6-1 | 200 | R | R | 8/28/1983 | 22 | Rowlett,Texas | 2006 | UDFA | | TB | |
| Jon Still | Lowell | C | AA | 6-2 | 210 | R | R | 11/16/1984 | 21 | Jackson,Mississippi | 2006 | 4 | 133 | BOS | |
| Erik Stiller | Mahoning Valley | P | AA | 6-5 | 210 | R | R | 7/10/1984 | 21 | Bryan,Texas | 2006 | UDFA | | CLE | |
| Justin Stiver | Tri City | P | A- | 6-1 | 170 | R | R | 8/7/1984 | 21 | Tampa,Florida | 2006 | 17 | 519 | HOU | |
| Brad Stone | Jamestown | P | AAA | 6-3 | 195 | R | R | 5/20/1984 | 22 | St. Louis,Missouri | 2006 | 12 | 365 | FLA | |
| Wesley Stone | Auburn | SS | A | 5-10 | 170 | R | R | 4/16/1987 | 19 | Hollywood,California | 2005 | 11 | 326 | TOR | |
| Tobi Stoner | Brooklyn | P | MLB | 6-2 | 185 | R | R | 12/3/1984 | 21 | Oakland,Maryland | 2006 | 16 | 484 | NYM | |
| Ryan Strieby | Oneonta | 1B | AAA | 6-6 | 220 | R | R | 8/9/1985 | 20 | Seattle,Washington | 2006 | 4 | 112 | DET | |
| Nicolas Suero | Williamsport | P | A | 6-2 | 170 | R | R | 12/10/1984 | 21 | Elias Pina,Dominican Republic | 2002 | UDFA | | PIT | |
| Kelly Sweppenhiser | Auburn | 3B | AAA | 6-0 | 185 | R | R | 11/25/1983 | 22 | Sunbury,Pennsylvania | 2006 | 44 | 1318 | TOR | |
| Josh Tamba | Aberdeen | P | A | 6-2 | 200 | L | R | 11/15/1984 | 21 | Rohnert Park,California | 2006 | 7 | 205 | BAL | |
| Eric Taylor | Tri City | 3B | A+ | 6-1 | 195 | R | R | 7/29/1985 | 20 | San Bernardino,California | 2006 | 30 | 909 | HOU | |
| Graham Taylor | Jamestown | P | MLB | 6-3 | 225 | L | L | 5/25/1984 | 22 | Covington,Kentucky | 2006 | 10 | 305 | FLA | |
| Jeffrey Taylor | Vermont | P | A- | 6-9 | 245 | R | R | 10/8/1983 | 22 | Joplin,Missouri | 2005 | 24 | 714 | WAN | |
| Justin Tellam | Tri City | C | A+ | 6-3 | 190 | R | R | 11/20/1984 | 21 | Orange,California | 2006 | 14 | 429 | HOU | |
| Chad Thall | Aberdeen | P | AA | 6-4 | 220 | L | L | 8/2/1985 | 20 | Mexico,Missouri | 2005 | 27 | 813 | BAL | |
| Brent Thomas | Mahoning Valley | OF | A- | 6-0 | 165 | R | R | 2/12/1983 | 23 | San Leandro,California | 2005 | 32 | 964 | CLE | |
| Scott Thomas | State College | C | AAA | 5-11 | 202 | L | R | 3/21/1985 | 21 | St. Louis,Missouri | 2006 | 38 | 1156 | STL | |
| Daryl Thompson | Vermont | P | MLB | 6-1 | 170 | R | R | 11/2/1985 | 20 | La Plata,Maryland | 2003 | 8 | 237 | MTL | |
| Tom Thornton | Oneonta | P | A- | 6-6 | 220 | L | L | 10/30/1983 | 22 | Boston,Massachusetts | 2006 | 21 | 622 | DET | |
| Brandon Timm | Oneonta | OF | A+ | 6-3 | 215 | R | R | 12/4/1984 | 21 | Cincinnati,Ohio | 2004 | 9 | 253 | DET | |
| David Timm | Lowell | P | A | 6-6 | 190 | L | L | 9/28/1983 | 22 | Fort Oglethorpe,Florida | 2002 | 19 | 577 | SF | |
| Josh Tomlin | Mahoning Valley | P | MLB | 6-1 | 175 | R | R | 10/19/1984 | 21 | Tyler,Texas | 2006 | 19 | 581 | CLE | |
| Tim Torres | Tri City | LF-RF | AAA | 6-2 | 180 | B | R | 11/12/1983 | 22 | Berkeley,California | 2006 | 23 | 699 | HOU | |
| Polin Trinidad | Tri City | P | AAA | 6-2 | 170 | L | L | 11/19/1984 | 21 | El Seybo,Dominican Republic | 2005 | UDFA | | HOU | |
| Brandon Tripp | Aberdeen | LF-RF | AA | 6-2 | 200 | L | R | 4/2/1985 | 21 | Artesia,California | 2006 | 12 | 355 | BAL | |
| Noah Tritz | Auburn | P | A | 5-10 | 215 | R | R | 2/19/1984 | 22 | Houston,Texas | 2006 | 32 | 960 | TOR | |
| Luke Trubee | Staten Island | P | A | 6-3 | 195 | R | R | 11/20/1983 | 22 | Xenia,Ohio | 2006 | 33 | 1004 | NYY | |
| Joe Tucker | Oneonta | OF | AA | 5-11 | 170 | R | R | 1/25/1984 | 22 | Canton,Ohio | 2006 | 24 | 712 | DET | |
| Jason Twomley | Lowell | 1B | AA | 6-0 | 215 | L | L | 9/20/1982 | 23 | Leominster,Massachusetts | 2005 | 24 | 738 | BOS | |
| Luis Valdez | Mahoning Valley | P | AA | 6-4 | 175 | R | R | 3/11/1984 | 22 | Santo Domingo,Dominican Republic | 2005 | UDFA | | CLE | |
| Cory Van Allen | Vermont | P | AAA | 6-2 | 180 | L | L | 12/24/1984 | 21 | Bakersfield,California | 2006 | 5 | 151 | WAN | |
| Jimmy Van Ostrand | Tri City | LF | AAA | 6-4 | 210 | R | R | 8/7/1984 | 21 | Vancouver,British Columbia | 2006 | 8 | 249 | HOU | |
| A.J. Van Slyke | State College | OF | AA | 6-2 | 210 | L | R | 11/19/1983 | 22 | St. Louis,Missouri | 2005 | 23 | 710 | STL | |
| Juan Velazquez | Staten Island | P | A | 6-4 | 190 | R | R | 10/11/1983 | 22 | Caguas,Puerto Rico | 2004 | 46 | 1383 | NYY | |
| Felix Ventura | Lowell | P | A | 5-11 | 165 | R | R | 4/27/1984 | 22 | Tambril,Dominican Republic | 2006 | UDFA | | BOS | |
| Jeff Vincent | Lowell | OF | A- | 6-4 | 205 | L | R | 4/15/1984 | 22 | Hartford,Connecticut | 2006 | 43 | 1301 | BOS | |
| Chris Vinyard | Aberdeen | 1B | A+ | 6-4 | 215 | R | R | 12/15/1985 | 20 | Las Cruces,New Mexico | 2005 | 38 | 1143 | BAL | |
| Will Vogl | Brooklyn | OF | A+ | 5-9 | 175 | R | R | 12/10/1983 | 22 | Daly City,California | 2006 | UDFA | | NYM | |
| D.J. Wabick | Brooklyn | LF | AAA | 6-2 | 185 | L | R | 5/30/1984 | 22 | Oak Lawn,Illinois | 2005 | 25 | 749 | NYM | |
| Nicholas Waechter | Brooklyn | P | A+ | 6-3 | 200 | R | R | 11/30/1984 | 21 | Tenmile,Oregon | 2006 | 23 | 694 | NYM | |
| Chad Wagler | Tri City | P | AA | 6-1 | 185 | R | R | 9/11/1983 | 22 | Canton,Ohio | 2006 | 22 | 669 | HOU | |
| Neil Wagner | Mahoning Valley | P | MLB | 6-0 | 200 | R | R | 1/1/1984 | 22 | Minneapolis,Minnesota | 2005 | 21 | 634 | CLE | |
| Erik Walker | Hudson Valley | P | A- | 6-4 | 225 | L | R | 10/15/1983 | 22 | Clemmons,North Carolina | 2006 | 20 | 589 | TB | |
| Sam Walls | Batavia | P | AA | 5-11 | 195 | R | R | 10/31/1983 | 22 | Martinsburg,West Virginia | 2006 | 10 | 307 | PHI | |
| P.J. Walters | State College | P | MLB | 6-4 | 200 | R | R | 3/12/1985 | 21 | Dothan,Alabama | 2006 | 11 | 346 | STL | |
| Jamar Walton | Jamestown | OF | A+ | 6-4 | 195 | L | R | 1/5/1986 | 20 | Emporia,Virginia | 2004 | 4 | 128 | FLA | |
| Rip Warren | Brooklyn | P | A- | 6-2 | 180 | L | L | 5/5/1984 | 22 | Roswell,Georgia | 2006 | UDFA | | NYM | |
| Nathan Warrick | Tri City | OF | A | 6-0 | 165 | L | L | 9/10/1983 | 22 | Belton,Texas | 2005 | 34 | 1034 | HOU | |
| Kris Watts | Williamsport | C | AAA | 6-1 | 200 | L | R | 7/15/1984 | 21 | Fremont,California | 2006 | 16 | 470 | PIT | |
| Justin Webb | Jamestown | 2B | A+ | 6-1 | 175 | R | R | 11/5/1982 | 23 | Rocky Mount,North Carolina | 2005 | 23 | 696 | FLA | |
| Casper Wells | Oneonta | LF-RF | MLB | 6-2 | 205 | R | R | 11/23/1984 | 21 | Grand Rapids,Michigan | 2005 | 14 | 420 | DET | |
| Travis Westerfeld | Jamestown | C | A | 6-2 | 200 | R | R | 12/17/1983 | 22 | Bakersfield,California | 2006 | UDFA | | FLA | |
| Demetri White | Vermont | P | A- | 6-1 | 200 | R | L | 6/12/1982 | 24 | The Woodlands,Texas | 2006 | UDFA | | WAN | |
| Matt Wilkerson | State College | OF | A | 6-2 | 215 | R | R | 12/18/1982 | 23 | Anaheim,California | 2001 | 30 | 889 | TB | |
| Brandon Williams | Williamsport | P | AA | 6-6 | 230 | R | R | 9/6/1984 | 21 | Huntington,West Virginia | 2006 | 29 | 860 | PIT | |
| Paul Winterling | Aberdeen | OF | A+ | 6-3 | 220 | R | R | 7/31/1983 | 22 | Glenelg,Maryland | 2005 | UDFA | | BAL | |
| Kyle Winters | Jamestown | P | AA | 6-4 | 190 | R | R | 4/22/1987 | 19 | Denver,Colorado | 2005 | 5 | 156 | FLA | |
| Brendan Wise | Oneonta | P | AAA | 6-2 | 190 | L | R | 1/9/1986 | 20 | Perth,Australia | 2005 | 8 | 240 | DET | |
| Derek Witt | Oneonta | P | AA | 6-1 | 170 | R | R | 12/31/1983 | 22 | Powell,Ohio | 2006 | 28 | 832 | DET | |
| Andy Woods | Mahoning Valley | P | A- | 6-3 | 210 | L | L | 11/26/1983 | 22 | Monett,Missouri | 2006 | UDFA | | CLE | |
| Mark Wright | Brooklyn | OF | A- | 6-1 | 195 | R | R | 9/12/1983 | 22 | Cordova,Tennessee | 2006 | UDFA | | NYM | |
| Charlie Yarbrough | Batavia | 1B | A | 6-6 | 250 | R | R | 11/7/1984 | 21 | Atlanta,Georgia | 2006 | 7 | 217 | PHI | |
| Ting-Jen Yeh | Lowell | P | A- | 6-1 | 189 | L | L | 7/1/1983 | 22 | Hengchun Township,Taiwan | 2006 | UDFA | | BOS | |
| Ben Zeskind | Auburn | 2B | A- | 6-0 | 185 | B | R | 1/19/1983 | 23 | Miami,Florida | 2006 | 37 | 1110 | TOR | |
| Zechry Zinicola | Vermont | P | AAA | 6-1 | 220 | R | R | 3/2/1985 | 21 | Loma Linda,California | 2006 | 6 | 181 | WAN | |
| J.T. Zink | Lowell | P | A+ | 6-2 | 195 | R | R | 5/6/1985 | 21 | Tacoma,Washington | 2005 | 8 | 258 | BOS | |