| Coast | ||||||||||||||
| Rk | Team | Nickname | W | L | Pct | Gbl | Overall | RF | RA | Manager | Stadium | Top Batter | Top Pitcher | Playoffs |
| 1 | Pepperdine | Waves | 23 | 7 | .767 | -- | 36-25 | 328 | 283 | Frank Sanchez | Eddy D. Field Stadium | Chris Kelly (4) | Greg Ramirez (1) | Conf. Finalists, CWS Regionals |
| 2 | Santa Clara | Broncos | 21 | 9 | .700 | 2.0 | 31-26 | 333 | 309 | Mark O'Brien | Buck Shaw Stadium | Scott Dierks (6) | Joe Diefenderfer (2) | - |
| 3 | Gonzaga | Bulldogs | 14 | 16 | .467 | 9.0 | 26-25-1 | 316 | 264 | Steve Hertz | Avista Stadium | Gordon Corder (2) | Eric Dworkis (3) | - |
| 4 | St. Mary's (CA) | Gaels | 8 | 21 | .276 | 14.5 | 18-37-1 | 296 | 393 | John Baptista | Louis Guisto Field | Bryan Byrne (7) | Eric Bowden (5) | - |
| West | ||||||||||||||
| Rk | Team | Nickname | W | L | Pct | Gbl | Overall | RF | RA | Manager | Stadium | Top Batter | Top Pitcher | Playoffs |
| 1 | San Diego ** | Toreros | 18 | 12 | .600 | -- | 32-30 | 372 | 378 | Rich Hill | Cunningham Stadium | Joey Prast (1) | Kyle Collins (7) | Conf. Champs, CWS Regionals |
| 2 | San Francisco | Dons | 17 | 13 | .567 | 1.0 | 25-31 | 336 | 363 | Nino Giarratano | Benedetti Diamond | Nick Tarbat (15) | Kevin Annis (9) | - |
| 3 | Loyola Marymount | Lions | 13 | 17 | .433 | 5.0 | 26-30 | 344 | 341 | Frank Cruz | George C. Page Stadium | Josh Whitesell (8) | Kyle Huddy (4) | - |
| 4 | Portland | Pilots | 5 | 24 | .172 | 12.5 | 9-43-1 | 259 | 459 | Christopher Sperry | Pilot Stadium | Kory Casto (5) | Trent Kristjanson (26) | - |