| 1 | 25 | June-Reg | Aaron Poreda | | P | 20 | 10/1/1986 | 6-6 | 240 | L | L | A+ | | University of San Francisco |
| 2 | 89 | June-Reg | Nevin Griffith | | P | 18 | 3/23/1989 | 6-2 | 165 | R | R | Rookie | | Middleton High School (Tampa,FL) |
| 5 | 179 | June-Reg | Nathan Jones | | P | 21 | 1/28/1986 | 6-5 | 190 | R | R | A | | Northern Kentucky University |
| 6 | 209 | June-Reg | Johnnie Lowe | | P | 22 | 3/21/1985 | 6-5 | 220 | R | R | A | | Point Loma Nazarene University (Calif.) |
| 8 | 269 | June-Reg | Lyndon Estill | | OF | 20 | 3/29/1987 | 6-3 | 215 | R | R | A | | Lower Columbia Community College |
| 9 | 299 | June-Reg | Kenny Gilbert | | OF | 18 | 2/6/1989 | 6-2 | 185 | L | L | Rookie | | DeSoto High School (DeSoto,TX) |
| 10 | 329 | June-Reg | Brian Guinn | | SS | 18 | 4/4/1989 | 5-11 | 165 | S | R | - | | Berkeley High School (Berkeley,CA) |
| 11 | 359 | June-Reg | Jordan Kendall | | OF | 20 | 2/20/1987 | 6-0 | 190 | S | L | - | | Contra Costa Junior College |
| 13 | 419 | June-Reg | Sergio Miranda | | SS | 20 | 3/5/1987 | 5-10 | 185 | S | R | A+ | | Virginia Commonwealth University |
| 14 | 449 | June-Reg | John Curtis | | C | 22 | 11/22/1984 | 6-2 | 210 | L | R | A | | California State University, Fullerton |
| 16 | 509 | June-Reg | Nick Mahin | | OF | 21 | 8/19/1985 | 6-1 | 225 | R | R | Rookie | | California State University, Fullerton |
| 19 | 599 | June-Reg | Henry Mabee | | P | 21 | 7/10/1985 | 6-4 | 230 | R | R | A | | Morehead State University |
| 22 | 689 | June-Reg | Justin Klipp | | P | 22 | 10/1/1984 | 6-4 | 230 | R | R | College | | California State University, Fullerton |
| 24 | 749 | June-Reg | Kevin Patterson | | 1B/C | 18 | 9/28/1988 | 6-4 | 215 | L | R | - | | Oak Mountain (Birmingham,AL) |
| 27 | 839 | June-Reg | Caleb Hurst | | P | 18 | 6/5/1989 | 6-3 | 180 | R | R | - | | Beyer High School (Modesto,CA) |
| 28 | 869 | June-Reg | Chris Epps | | OF/P | 18 | 12/10/1988 | 6-2 | 172 | L | R | - | | Dunwoody High School (Dunwoody,GA) |
| 30 | 929 | June-Reg | John Flanagan | | P | 19 | 6/15/1988 | 6-5 | 200 | L | L | - | | Belleville High School (Belleville,IL) |
| 31 | 958 | June-Reg | Eduardo Orozco | | P | 18 | 4/11/1989 | 6-2 | 195 | R | R | - | | Rubidoux High School (Riverside,CA) |
| 32 | 987 | June-Reg | Andre Lamontagne | | P | 21 | 3/24/1986 | 6-4 | 180 | S | R | College | | Long Beach State University |
| 35 | 1074 | June-Reg | Zach Babbit | | 2B | 17 | 9/1/1989 | 5-7 | 160 | L | R | - | | Albany High School (Albany,CA) |
| 37 | 1130 | June-Reg | Alex Rodriguez | | 3B | 18 | 5/28/1989 | 6-2 | 198 | R | R | - | | La Salle High School (Miami,FL) |
| 38 | 1158 | June-Reg | Grant Monroe | | P | 18 | 9/29/1988 | 6-4 | 205 | R | R | - | | Schaumburg High School (Schaumburg,IL) |
| 39 | 1187 | June-Reg | Roddy Jones | | OF | 21 | 8/25/1985 | 6-1 | 190 | R | R | - | | Chamblee High School (Chamblee,GA) |
| 40 | 1213 | June-Reg | Austin King | | 2B | 18 | 12/1/1988 | 6-2 | 200 | R | R | - | | Gallia Academy High School (Galliopolis,OH) |
| 41 | 1239 | June-Reg | Devon Shines | | 1B | 18 | 5/15/1989 | 5-10 | 195 | R | L | - | | Westwood High School (Palestine,TX) |
| 43 | 1291 | June-Reg | Baldwin Vargas | | P | 21 | 6/1/1986 | 6-1 | 230 | R | R | - | | New Jersey City University |
| 44 | 1317 | June-Reg | John Grim | | 1B | 18 | 10/23/1988 | 6-0 | 185 | R | R | - | | John Hersey High School (Arlington Heights,IL) |