| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 14 | June-Reg | Jason Heyward | | OF | 17 | 8/9/1989 | 6-4 | 220 | L | L | Rookie | | Henry County High School (McDonough,GA) |
| 1 | 33 | June-Reg | Jon Gilmore | | 3B | 18 | 8/23/1988 | 6-3 | | R | R | Rookie | | Iowa City High School (Iowa City,IA) |
| 2 | 78 | June-Reg | Freddie Freeman | | 1B/P | 17 | 9/12/1989 | 6-5 | | L | R | Rookie | | El Modena High School (Orange,CA) |
| 3 | 108 | June-Reg | Brandon Hicks | | SS | 21 | 9/14/1985 | 6-2 | 200 | R | R | A | | Texas A&M University |
| 4 | 138 | June-Reg | Cory Gearrin | | P | 21 | 4/14/1986 | 6-3 | 200 | R | R | Rookie | | Mercer University |
| 5 | 168 | June-Reg | Dennis Dixon | | OF | 22 | 1/11/1985 | 6-4 | 205 | L | R | Rookie | | University of Oregon |
| 6 | 198 | June-Reg | Michael Fisher | | SS | 22 | 3/22/1985 | 6-2 | 185 | S | R | A+ | | Georgia Tech |
| 7 | 228 | June-Reg | Travis Jones | | 2B | 21 | 11/10/1985 | 5-9 | 190 | R | R | A | | University of South Carolina |
| 8 | 258 | June-Reg | Colby Shreve | | P | 19 | 1/5/1988 | 6-5 | 220 | R | R | - | | College of Southern Idaho |
| 9 | 288 | June-Reg | Tim Ladd | | P | 21 | 11/2/1985 | 5-11 | 175 | L | L | Rookie | | Georgia Tech |
| 10 | 318 | June-Reg | Thomas Palica | | P | 19 | 7/21/1987 | 6-3 | 215 | L | L | Rookie | | Golden West College |
| 11 | 348 | June-Reg | Brandon Belt | | P | 19 | 4/20/1988 | 6-5 | 185 | L | L | - | | San Jacinto College-North |
| 12 | 378 | June-Reg | Nick Fellman | | P | 21 | 8/29/1985 | 6-3 | | L | R | Rookie | | Minnesota State University Mankato |
| 13 | 408 | June-Reg | Chad Maddox | | OF | 21 | 4/5/1986 | 5-11 | 190 | R | R | Rookie | | University of Tennessee |
| 14 | 438 | June-Reg | Caleb Brewer | | P | 18 | 2/2/1989 | 6-3 | 205 | R | R | Rookie | | Harris County High School (Hamilton,GA) |
| 15 | 468 | June-Reg | Paul Demny | | P | 17 | 8/3/1989 | 6-3 | 218 | R | R | - | | East Bernard (Bernard,TX) |
| 16 | 498 | June-Reg | Eddie Burns | | P | 21 | 9/21/1985 | 6-8 | | R | R | College | | Georgia Tech |
| 17 | 528 | June-Reg | Benji Johnson | | C | 20 | 7/17/1986 | 6-1 | 185 | R | R | College | | University of North Carolina |
| 18 | 558 | June-Reg | Randy Gress | | SS | 22 | 12/6/1984 | 6-2 | 185 | R | R | Rookie | | Quinnipiac University |
| 19 | 588 | June-Reg | Brett Butts | | P | 21 | 4/24/1986 | 6-2 | 200 | R | R | A+ | | Auburn University |
| 20 | 618 | June-Reg | C.J. Lee | | OF | 22 | 8/12/1984 | 6-3 | 190 | R | R | College | | East Tennessee State University |
| 21 | 648 | June-Reg | Kuyaunnis Miles | | OF | 20 | 5/15/1987 | 6-2 | 185 | L | R | Rookie | | Chattahoochee Valley Community College |
| 22 | 678 | June-Reg | Lyle Allen | | OF | 18 | 9/30/1988 | 6-3 | 200 | L | L | - | | Cartersville High School (Cartersville,GA) |
| 23 | 708 | June-Reg | Edmond Sparks | | C | 18 | 2/17/1989 | 5-11 | 200 | R | R | - | | Lovejoy High School (Hampton,GA) |
| 24 | 738 | June-Reg | Mitch Harris | | P | 21 | 11/7/1985 | 6-4 | | R | R | College | | Navy |
| 25 | 768 | June-Reg | Rico Reid | | P | 18 | 9/24/1988 | 5-11 | 218 | R | R | A | | East Coweta High School (Sharpsburg,GA) |
| 26 | 798 | June-Reg | Daniel Elorriaga-Matra | | C | 18 | 12/28/1988 | 6-0 | 185 | R | R | Rookie | | Stoneman Douglas High School (Parkland,FL) |
| 27 | 828 | June-Reg | Adam Milligan | | OF | 19 | 3/14/1988 | 6-3 | 210 | L | R | - | | Walters State Community College |
| 28 | 858 | June-Reg | Rashod Henry | | OF | 18 | 8/26/1988 | 5-10 | 175 | R | R | Rookie | | Lumberton High School (Lumberton,MS) |
| 29 | 888 | June-Reg | Gary Gillheeney | | P | 18 | 6/11/1989 | 6-4 | 195 | R | R | - | | Bishop Hendricken High School (Warwick,RI) |
| 30 | 918 | June-Reg | Rene Escobar | | 1B | 20 | 11/22/1986 | 6-0 | 180 | R | R | - | | Riverside Community College |
| 31 | 948 | June-Reg | Benino Pruneda | | P | 18 | 8/8/1988 | 5-9 | 170 | R | R | A | | San Jacinto College-North |
| 32 | 977 | June-Reg | T.J. Wohlever | | P | 20 | 1/10/1987 | 6-1 | 225 | R | L | Rookie | | Western Nevada Community College |
| 33 | 1006 | June-Reg | Craig Kimbrel | | P | 19 | 5/28/1988 | 5-11 | 205 | R | R | - | | Wallace State Community College (AL) |
| 34 | 1035 | June-Reg | Robert Maddox | | 1B | 18 | 10/18/1988 | 6-2 | | L | L | - | | Villa Angela-St. Joseph (Cleveland,OH) |
| 35 | 1064 | June-Reg | Chris Moon | | OF | 17 | 8/3/1989 | 6-1 | 195 | R | R | - | | Tucson Magnet High School (Tucson,AZ) |
| 36 | 1093 | June-Reg | Vernell Warren | | 2B | 18 | 9/27/1988 | 5-10 | 160 | R | R | - | | Grant High School (Portland,OR) |
| 37 | 1121 | June-Reg | Randy Yard | | P | 18 | 4/20/1989 | 6-0 | 160 | R | R | - | | Palm Desert High School (Palm Desert,CA) |
| 38 | 1149 | June-Reg | Will Casey | | P | 18 | 10/25/1988 | 6-2 | 177 | L | L | - | | Kennesaw Mountain (Kennesaw,GA) |
| 39 | 1177 | June-Reg | Elliott Armstrong | | OF | 18 | 6/9/1989 | 5-8 | 160 | R | R | - | | Harlan High School (Chicago,IL) |
| 40 | 1205 | June-Reg | Anthony Whitenton | | SS | 19 | 2/20/1988 | 6-3 | 192 | R | R | - | | Heritage High School (Conyers,GA) |
| 41 | 1231 | June-Reg | Sheldon Johnson | | P | 18 | 10/16/1988 | 6-0 | 190 | R | R | - | | Deptford Township High School (Deptford,NJ) |
| 42 | 1257 | June-Reg | Bryson Rahler | | C | 18 | 6/10/1989 | 6-2 | 185 | R | R | - | | Cajon High School (San Bernardino,CA) |
| 43 | 1283 | June-Reg | Ryan Chaffee | | P | 19 | 5/18/1988 | 6-2 | 190 | R | R | - | | Chipola College |
| 44 | 1309 | June-Reg | Dock Doyle | | C | 21 | 3/24/1986 | 6-0 | 200 | L | R | College | | Coastal Carolina University |
| 45 | 1335 | June-Reg | Tarus Thomas | | OF | 18 | 4/10/1989 | 6-3 | 220 | R | R | - | | St. Dominic's High School (Oyster Bay,NY) |
| 46 | 1359 | June-Reg | Brett Krill | | OF | 18 | 1/24/1989 | 6-4 | 195 | R | R | - | | Aliso Niguel High School (Aliso Viejo,CA) |
| 47 | 1382 | June-Reg | Goldy Simmons | | P | 18 | 10/29/1988 | 6-4 | 210 | R | R | - | | San Diego City College |
| 48 | 1403 | June-Reg | Joe Lincoln | | C | 18 | 9/16/1988 | 6-4 | 210 | R | R | - | | Tipton (Tipton,MO) |
| 49 | 1424 | June-Reg | Tyreace House | | OF | 19 | 3/1/1988 | 5-10 | 175 | R | R | - | | College of the Canyons |
| 50 | 1445 | June-Reg | Andrew Armstrong | | P | 17 | 7/7/1989 | 6-1 | 185 | R | L | - | | Tumer Asbey High School (Harrisonburg,VA) |
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