| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 28 | June-Reg | Ben Revere | | OF | 19 | 5/3/1988 | 5-9 | 165 | L | R | A | | Lexington Catholic High School (Lexington,KY) |
| 2 | 92 | June-Reg | Danny Rams | | C/1B | 18 | 12/19/1988 | 6-2 | 220 | R | R | Rookie | | Gulliver Prep High School (Coral Gables,FL) |
| 3 | 122 | June-Reg | Angel Morales | | OF | 17 | 11/24/1989 | 6-0 | 185 | R | R | Rookie | | Puerto Rico Baseball Academy High School (Gurabo,PR) |
| 4 | 152 | June-Reg | Reggie Williams | | 3B | 18 | 11/5/1988 | 6-0 | 170 | L | R | - | | Bellflower High School (Bellflower,CA) |
| 5 | 182 | June-Reg | Nate Striz | | P | 18 | 10/15/1988 | 6-2 | 210 | R | R | - | | Santa Fe Christian High School (Solana Beach,CA) |
| 6 | 212 | June-Reg | Mike McCardell | | P | 22 | 4/13/1985 | 6-5 | 220 | R | R | A | | Kutztown University of Pennsylvania |
| 7 | 242 | June-Reg | Daniel Berlind | | P | 19 | 12/3/1987 | 6-7 | 210 | R | R | A | | Los Angeles Pierce College |
| 8 | 272 | June-Reg | Danny Lehmann | | C | 21 | 9/5/1985 | 5-11 | 190 | R | R | A | | Rice University |
| 9 | 302 | June-Reg | Steven Hirschfeld | | P | 21 | 9/8/1985 | 6-5 | 220 | R | R | A | | San Diego State University |
| 10 | 332 | June-Reg | Blair Erickson | | P | 22 | 10/28/1984 | 6-1 | 210 | R | R | College | | University of California-Irvine |
| 11 | 362 | June-Reg | Andrew Schmiesing | | OF | 21 | 5/24/1986 | 6-4 | 190 | L | L | Rookie | | St. Olaf College |
| 12 | 392 | June-Reg | Mike Tarsi | | P | 20 | 8/11/1986 | 6-8 | 190 | R | L | A | | University of Connecticut |
| 13 | 422 | June-Reg | Elliot Soto | | SS | 17 | 8/21/1989 | 5-9 | 150 | R | R | - | | Dundee-Crown High School (Carpentersville,IL) |
| 14 | 452 | June-Reg | Dan Rohlfing | | C | 18 | 2/12/1989 | 6-0 | 185 | R | R | Rookie | | Oakville High School (St. Louis,MO) |
| 15 | 482 | June-Reg | Daniel Latham | | P | 22 | 9/5/1984 | 6-3 | 185 | R | R | Rookie | | Tulane University |
| 16 | 512 | June-Reg | Nelvin Fuentes | | P | 18 | 4/7/1989 | 6-0 | | L | L | Rookie | | Puerto Rico Baseball Academy High School (Gurabo,PR) |
| 17 | 542 | June-Reg | Jose Rodriguez | | OF/1B | 18 | 5/25/1989 | 6-1 | | R | R | - | | Hialeah High School (Hialeah,FL) |
| 18 | 572 | June-Reg | Lee Martin | | P | 21 | 5/28/1986 | 6-0 | 195 | R | R | Rookie | | Southern Arkansas University |
| 19 | 602 | June-Reg | Ben Petsch | | C | 22 | 9/3/1984 | 6-0 | 185 | R | R | A | | Belmont University |
| 20 | 632 | June-Reg | Tom Farmer | | P | 20 | 8/27/1986 | 6-1 | 200 | R | R | College | | University of Akron |
| 21 | 662 | June-Reg | Ozzie Lewis | | OF | 21 | 3/21/1986 | 6-5 | 210 | R | R | A | | Fresno State University |
| 22 | 692 | June-Reg | Mickey Storey | | P | 21 | 3/16/1986 | 6-2 | 183 | R | R | College | | Florida Atlantic University |
| 23 | 722 | June-Reg | Josh Workman | | 2B | 21 | 11/4/1985 | 6-1 | 200 | L | R | College | | Wichita State University |
| 24 | 752 | June-Reg | Charles Nolte | | P | 21 | 3/19/1986 | 6-3 | 205 | R | R | A | | San Diego State University |
| 25 | 782 | June-Reg | Spencer Steedley | | OF/P | 22 | 5/31/1985 | 6-1 | 200 | L | L | A | | University of North Carolina-Charlotte |
| 26 | 812 | June-Reg | Kyle Witten | | P | 18 | 9/14/1988 | 6-4 | 175 | R | R | - | | Bakersfield Junior College |
| 27 | 842 | June-Reg | Kyle Heyne | | P | 22 | 8/17/1984 | 6-5 | 220 | R | R | College | | Ball State University |
| 28 | 872 | June-Reg | Seth Rosin | | P | 18 | 11/2/1988 | 6-6 | 230 | R | R | - | | Mounds View High School (Arden Hills,MN) |
| 29 | 902 | June-Reg | Fred Atkins | | OF | 18 | 9/11/1988 | 6-3 | 170 | R | R | - | | Marin Community College. |
| 30 | 932 | June-Reg | Josh Adams | | SS | 18 | 3/7/1989 | 5-11 | 170 | R | R | - | | Eagle View Academy High School (Jacksonville,FL) |
| 31 | 961 | June-Reg | Mike Kvasnicka | | OF | 18 | 12/7/1988 | 6-2 | 200 | R | R | - | | North (Lakeville,MN) |
| 32 | 990 | June-Reg | Johnny Bromberg | | P | 17 | 1/17/1990 | 6-3 | 195 | R | R | - | | Palisades High School (Pacific Palisades,CA) |
| 33 | 1019 | June-Reg | Evan Danieli | | P | 17 | 8/2/1989 | 6-8 | 225 | R | R | - | | Seton Hall Prep High School (West Orange,NJ) |
| 34 | 1048 | June-Reg | Stephen Branca | | SS | 18 | 4/10/1989 | 6-1 | 170 | R | R | - | | Newsome (Lithia,FL) |
| 35 | 1077 | June-Reg | Ryan Strauss | | P | 21 | 10/21/1985 | 6-2 | 200 | R | R | College | | Florida State University |
| 36 | 1105 | June-Reg | Dominique Rodgers | | P | 22 | 1/21/1985 | 6-2 | 200 | R | R | A | | Kent State University |
| 37 | 1133 | June-Reg | Julien Pollard | | 2B | 18 | 2/18/1989 | 5-11 | 195 | S | R | - | | Washington (Tacoma,WA) |
| 38 | 1161 | June-Reg | Chris Cates | | SS | 22 | 4/15/1985 | 5-3 | 150 | R | R | A | | University of Louisville |
| 39 | 1189 | June-Reg | Joe Leftridge | | OF | 18 | 11/23/1988 | 5-11 | 170 | R | R | - | | Duncanville High School (Duncanville,TX) |
| 40 | 1216 | June-Reg | Chase Anderson | | P | 19 | 11/30/1987 | 6-1 | 175 | R | R | College | | North Central Texas College |
| 41 | 1242 | June-Reg | Jon Griffin | | P | 18 | 4/29/1989 | 6-6 | 200 | R | R | - | | Lakewood Ranch High School (Bradenton,FL) |
| 42 | 1268 | June-Reg | Troy Scott | | 1B | 18 | 3/4/1989 | 6-5 | 185 | L | R | - | | Auburn High School (Auburn,AL) |
| 44 | 1320 | June-Reg | Zach Barger | | OF | 21 | 11/1/1985 | 6-2 | 195 | L | R | College | | Long Beach State University |
| 45 | 1344 | June-Reg | Kevin Arico | | P | 18 | 8/30/1988 | 6-5 | 195 | R | R | - | | North Hunterdon High School (Pottersville,NJ) |
| 46 | 1367 | June-Reg | John Williams | | 3B | 18 | 10/7/1988 | 6-3 | 245 | R | R | - | | Niles North High School (Skokie,IL) |
| 47 | 1389 | June-Reg | Chris Heston | | P | 19 | 4/10/1988 | 6-4 | 185 | R | R | - | | Seminole Community College |
| 48 | 1410 | June-Reg | Ken Smalley | | P | 19 | 7/25/1987 | 6-2 | 195 | R | R | - | | John A. Logan College |
| 49 | 1431 | June-Reg | Nick Cobler | | P | 20 | 7/30/1986 | 6-4 | 190 | L | L | - | | Butler County Community College |
| 50 | 1452 | June-Reg | Chris Freshcorn | | C | 18 | 2/14/1989 | 6-2 | 185 | R | R | - | | Alonso (Tampa,FL) |
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