| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 19 | June-Reg | Brett Sinkbeil | | P | 21 | 12/26/1984 | 6-4 | 185 | R | R | AA | | Southwest Missouri State University |
| 1 | 36 | June-Reg | Chris Coghlan | | 3B | 21 | 6/18/1985 | 6-1 | 190 | L | R | AA | | University of Mississippi |
| 2 | 63 | June-Reg | Thomas Hickman | | CF | 18 | 4/18/1988 | 6-1 | 175 | L | L | A | | Pepperell (Lindale,GA) |
| 3 | 90 | June-Reg | Torre Langley | | C | 18 | 10/9/1987 | 5-9 | 175 | R | R | AAA | | Alexander High School (Douglasville,GA) |
| 3 | 95 | June-Reg | Scott Cousins | | LF | 21 | 1/22/1985 | 6-2 | 180 | | | A+ | | University of San Francisco |
| 4 | 125 | June-Reg | Hector Correa | | P | 18 | 3/18/1988 | 6-3 | 165 | R | R | A | | Lorenzo Coballes Gandia (Hatillo,PR) |
| 5 | 155 | June-Reg | Chris Hatcher | | C | 21 | 1/12/1985 | 6-2 | 180 | B | R | A+ | | University of North Carolina-Wilmington |
| 6 | 185 | June-Reg | Justin Jacobs | | SS | 17 | 7/31/1988 | 6-2 | 185 | R | R | A | | Chino High School (Chino,CA) |
| 7 | 215 | June-Reg | Don Czyz | | P | 22 | 9/16/1983 | 6-2 | 200 | R | R | A | | University of Kansas |
| 8 | 245 | June-Reg | Daniel Garcia | | SS | 18 | 12/27/1987 | 5-11 | 175 | R | R | A | | Nogales High School (La Puente,CA) |
| 9 | 275 | June-Reg | John Raynor | | CF | 22 | 1/4/1984 | 6-2 | 185 | R | R | AA | | University of North Carolina-Wilmington |
| 10 | 305 | June-Reg | Graham Taylor | | P | 22 | 5/25/1984 | 6-3 | 225 | L | L | A+ | | University of Miami (Florida) |
| 11 | 335 | June-Reg | Osvaldo Martinez | | SS | 18 | 5/7/1988 | 5-10 | 170 | R | R | A+ | | Porterville (Calif.) Junior College |
| 12 | 365 | June-Reg | Brad Stone | | P | 22 | 5/20/1984 | 6-3 | 195 | R | R | A+ | | Quincy University |
| 13 | 395 | June-Reg | Drew Saylor | | 2B | 22 | 1/9/1984 | 5-10 | 184 | R | R | A- | | Kent State University |
| 14 | 425 | June-Reg | Jay Buente | | P | 22 | 9/28/1983 | 6-2 | 190 | R | R | A+ | | Purdue University |
| 15 | 455 | June-Reg | Guiller Martinez | | SS | | | | | | | A- | | University of South Alabama |
| 16 | 485 | June-Reg | Jacob Blackwood | | 3B | 20 | 9/14/1985 | 6-0 | 195 | R | R | A+ | | Maple Woods Community College |
| 17 | 515 | June-Reg | Hunter Mense | | RF | | | | | | | A | | University of Missouri |
| 18 | 545 | June-Reg | Ross Liersemann | | P | 22 | 8/14/1983 | 6-4 | 205 | R | R | A+ | | University of Akron |
| 19 | 575 | June-Reg | Jordan Davis | | P | | | | | | | A- | | University of Alabama |
| 20 | 605 | June-Reg | Steven Sultzbaugh | | RF | 18 | 5/21/1988 | 6-3 | 190 | R | R | - | | Westwood High School (Austin,TX) |
| 21 | 635 | June-Reg | Corey Madden | | P | 22 | 3/30/1984 | 6-1 | 195 | R | R | A+ | | St. Mary's College of California |
| 22 | 665 | June-Reg | Kevan Kelley | | P | 22 | 6/4/1984 | 6-0 | 200 | L | L | Rookie | | California State University, San Bernardino |
| 23 | 695 | June-Reg | Rylan Hanks | | P | | | | | | | College | | California State University, San Bernardino |
| 24 | 725 | June-Reg | Ernesto Rivera | | LF | 18 | 11/10/1987 | 5-11 | 205 | R | R | - | | Puerto Rico Baseball Academy High School (Gurabo,PR) |
| 25 | 755 | June-Reg | Joel Fountain | | P | 22 | 11/10/1983 | 6-4 | 175 | R | R | A | | St. Mary's College of California |
| 26 | 785 | June-Reg | Andy Jackson | | P | 22 | 8/8/1983 | 6-1 | 185 | L | L | A+ | | University of Central Arkansas |
| 27 | 815 | June-Reg | Jeremy Hall | | P | | | | | | | A | | East Tennessee State University |
| 28 | 845 | June-Reg | Kedrick Martin | | P | 19 | 1/28/1987 | 6-1 | 170 | L | L | Rookie | | Meridian College |
| 29 | 875 | June-Reg | Jonathan Van Looy | | P | 17 | 8/11/1988 | 6-2 | 210 | L | L | A- | | John Swett (Crockett,CA) |
| 30 | 905 | June-Reg | Quinn Harris | | SS | 18 | 5/29/1988 | 5-11 | 170 | R | R | - | | Elizabethtown High School (Elizabethtown,KY) |
| 31 | 935 | June-Reg | Willie Mays | | CF | | | | | | | - | | Sinclair Community College |
| 32 | 965 | June-Reg | Alejandro Sanabia | | P | 17 | 9/8/1988 | 6-1 | 165 | R | R | A | | Castle Park High School (Chula Vista,CA) |
| 33 | 995 | June-Reg | Eric Basurto | | P | 20 | 4/17/1986 | 6-3 | 200 | R | R | A+ | | Chabot College |
| 34 | 1025 | June-Reg | Thomas Kelly | | P | 18 | 9/27/1987 | 6-2 | 240 | R | R | - | | Bakersfield Junior College |
| 35 | 1055 | June-Reg | Christopher Evans | | C | 17 | 9/2/1988 | 6-1 | 155 | L | R | - | | Serrano (Phelan,CA) |
| 36 | 1085 | June-Reg | Dave Williams | | RF | 27 | 3/12/1979 | 6-2 | 205 | L | L | MLB | 2001-2007 | Rutgers University |
| 37 | 1115 | June-Reg | James Wallace | | P | 19 | 10/9/1986 | 6-2 | 190 | R | R | - | | College of Southern Idaho |
| 38 | 1145 | June-Reg | Jeremie Tice | | 3B | 19 | 9/25/1986 | 6-1 | 225 | R | R | - | | Tallahassee Community College |
| 39 | 1175 | June-Reg | Brandon McDougall | | LF | 22 | 2/7/1984 | 6-3 | 180 | R | R | - | | University of California-Irvine |
| 40 | 1205 | June-Reg | Luis Suarez | | P | 21 | 9/21/1984 | 6-1 | 205 | R | R | Rookie | | Southeastern Louisiana University |
| 41 | 1235 | June-Reg | Kyle Barry | | P | 19 | 7/7/1986 | 6-6 | 200 | R | R | - | | Madison Area Technical College |
| 42 | 1265 | June-Reg | Ryan Kussmaul | | P | 19 | 9/19/1986 | 6-4 | 185 | R | R | - | | Madison Area Technical College |
| 43 | 1294 | June-Reg | William Jackel | | P | 20 | 10/16/1985 | 6-1 | 200 | R | R | Rookie | | Tallahassee Community College |
| 44 | 1323 | June-Reg | Anthony Forrest | | P | 18 | 9/28/1987 | 6-5 | 170 | R | R | - | | Haughton (Haughton,LA) |
| 45 | 1352 | June-Reg | Kyle Price | | 2B | 21 | 8/14/1984 | 6-2 | 175 | R | R | - | | Eastern Oklahoma State Community College |
| 46 | 1380 | June-Reg | Mitch MacDonald | | 3B | 19 | 6/8/1987 | 5-11 | 185 | L | R | Rookie | | Monterey Peninsula College |
| 47 | 1408 | June-Reg | Brooks Martin | | P | 18 | 2/4/1988 | 6-0 | 0 | R | R | - | | Streator (Streator,IL) |
| 48 | 1436 | June-Reg | Lance Hanmer | | SS | 18 | 1/15/1988 | 6-1 | 185 | L | R | - | | Greensburg (Greensburg,IN) |
| 49 | 1464 | June-Reg | Michael Hubbard | | LF | 19 | 12/10/1986 | 5-10 | 185 | L | L | - | | Arkansas-Fort Smith Junior College |
| 50 | 1492 | June-Reg | Andrew Raponi | | 1B | 18 | 1/3/1988 | 6-4 | 210 | L | R | - | | Monte Vista High School (Danville,CA) |
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