| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 20 | June-Reg | Mark Pawelek | $$ | lhp | 18 | 8/18/1986 | 6-3 | 190 | L | L | A | | Springville High School (Springville,UT) |
| 2 | 68 | June-Reg | Donald Veal | $$ | lhp | 20 | 9/18/1984 | 6-3 | 200 | L | L | AA | | Pima Community College |
| 3 | 100 | June-Reg | Mark Holliman | $$ | RHP | 21 | 9/19/1983 | 6-0 | 195 | R | R | AAA | | University of Mississippi |
| 3 | 108 | June-Reg | Mike Billek | | RHP | 21 | 3/4/1984 | 6-4 | 250 | R | R | A+ | | University of Central Florida |
| 4 | 130 | June-Reg | Dylan Johnston | | ss | 18 | 3/25/1987 | 6-0 | 180 | L | R | A | | Hamilton High School (Chandler,AZ) |
| 5 | 160 | June-Reg | Scott Taylor | | rhp | 18 | 12/28/1986 | 6-3 | 240 | R | R | A+ | | Hermitage High School (Richmond,VA) |
| 6 | 190 | June-Reg | Kyle Reynolds | | ss | 21 | 9/1/1983 | 6-2 | 190 | L | R | AA | | Baylor University |
| 7 | 220 | June-Reg | Trey Taylor | | LHP | | | | | | | College | | Baylor University |
| 8 | 250 | June-Reg | Jake Muyco | | C | 20 | 9/16/1984 | 6-1 | 170 | R | R | AA | | North Carolina State University |
| 9 | 280 | June-Reg | Matt Avery | | rhp | 21 | 9/7/1983 | 6-5 | 235 | R | R | AA | | University of Virginia |
| 10 | 310 | June-Reg | Joe Simokaitis | | SS | 22 | 12/27/1982 | 6-1 | 200 | R | R | AAA | | University of Nebraska |
| 11 | 340 | June-Reg | Mike Phelps | | rhp | 21 | 5/26/1984 | 6-4 | 195 | R | R | A+ | | Central Missouri State University |
| 12 | 370 | June-Reg | Yusuf Carter | | c | 20 | 2/6/1985 | 6-3 | 197 | B | R | A+ | | El Paso Community College |
| 13 | 400 | June-Reg | Brett Jackson | | rhp | 20 | 9/28/1984 | 6-3 | 210 | R | R | A- | | Modesto Junior College |
| 14 | 430** | June-Reg | Tyler Graham | | OF | 21 | 1/25/1984 | 6-0 | 180 | R | R | A+ | | Oregon State University |
| 15 | 460 | June-Reg | Roger Evenson | | RHP | 21 | 8/18/1983 | 6-4 | 235 | R | R | A | | Northwest Nazarene University |
| 16 | 490 | June-Reg | Jon Mueller | | rhp | | | | | | | AA | | University of Minnesota |
| 17 | 520 | June-Reg | Brandon Taylor | | 3B | 22 | 7/26/1982 | 6-1 | 195 | R | R | A | | Brigham Young University |
| 18 | 550 | June-Reg | Victor Liriano | | of | 21 | 5/19/1984 | 5-11 | 200 | L | L | Rookie | | El Paso Community College |
| 19 | 580 | June-Reg | Kyle Holden | | rhp | 21 | 12/13/1983 | 6-6 | 205 | R | R | A- | | California State University, San Bernardino |
| 20 | 610** | June-Reg | L.V. Ware | | of | 18 | 3/18/1987 | 5-10 | 185 | R | R | - | | North Atlanta High School (Atlanta,GA) |
| 21 | 640 | June-Reg | Pete Farina | | C | 21 | 9/7/1983 | 6-1 | 205 | R | R | AA | | Virginia Commonwealth University |
| 22 | 670 | June-Reg | Michael Hyle | | rhp | 23 | 2/20/1982 | 6-2 | 200 | R | R | A | | University of Georgia |
| 23 | 700 | June-Reg | Jayson Ruhlman | | lhp | 20 | 8/17/1984 | 6-1 | 180 | L | L | A+ | | Central Michigan University |
| 24 | 730 | June-Reg | Scott Hode | | SS | 22 | 3/11/1983 | 6-0 | 180 | R | R | A- | | University of Arkansas |
| 25 | 760 | June-Reg | D.J. Lewis | | of | | | | | | | College | | Los Angeles Valley Junior College |
| 26 | 790 | June-Reg | Nikolaus Crouch | | 1B | 22 | 1/26/1983 | 6-4 | 225 | R | R | Rookie | | Vanguard University of Southern California |
| 27 | 820 | June-Reg | Davy Gregg | | of | 22 | 5/31/1983 | 6-2 | 175 | L | R | A | | University of South Carolina |
| 28 | 850 | June-Reg | Michael Greenhouse | | lhp | 22 | 4/18/1983 | 5-11 | 200 | L | L | Ind | | University of Evansville |
| 29 | 880 | June-Reg | Johnny Defendis | | OF | 21 | 3/12/1984 | 6-1 | 195 | L | R | A | | Rutgers University |
| 30 | 910** | June-Reg | Matt Liuzza | | c | 21 | 2/3/1984 | 6-0 | 200 | R | R | A+ | | Louisiana State University |
| 31 | 940 | June-Reg | Brad Depoy | | rhp | 20 | 9/14/1984 | 6-1 | 205 | R | R | College | | San Jacinto College-North |
| 32 | 970 | June-Reg | Colby Wark | | RHP | | | | | | | College | | Lower Columbia Community College |
| 33 | 1000 | June-Reg | Ben Ferguson | | rhp | 18 | 10/10/1986 | 6-7 | 210 | R | R | - | | Cottonwood High School (Salt Lake City,UT) |
| 34 | 1030 | June-Reg | Cody Gilbert | | 3B | 19 | 8/21/1985 | 6-3 | 185 | R | R | A- | | Lincoln Trail (Ill.) Junior College |
| 35 | 1060 | June-Reg | Drew O'Connell | | rhp | 19 | 5/11/1986 | 6-3 | 210 | R | R | - | | John A. Logan College |
| 36 | 1090 | June-Reg | Needham Jones | | lhp | | | | | | | College | | Old Dominion University |
| 37 | 1120 | June-Reg | Kyle Keen | | OF | 22 | 6/12/1983 | 6-2 | 210 | R | R | Ind | | University of Georgia |
| 38 | 1150 | June-Reg | Ryan Episcopo | | of | 19 | 7/20/1985 | 6-2 | 180 | L | R | A- | | Andrew College |
| 39 | 1180 | June-Reg | Justin Morgan | | c | 23 | 2/1/1982 | 6-1 | 193 | R | R | A | | University of Louisiana-Lafayette |
| 40 | 1209 | June-Reg | Ryan Chambers | | LHP | 22 | 12/31/1982 | 6-0 | 165 | L | L | A- | | Brigham Young University |
| 41 | 1238 | June-Reg | Chris Rollins | | rhp | 18 | 9/16/1986 | 6-4 | 190 | R | R | - | | Winslow Township High School (Blue Anchor,NJ) |
| 42 | 1267 | June-Reg | Noah Garza | | RHP | 18 | 10/9/1986 | 6-0 | 190 | R | R | College | | Nolan Catholic High School (Fort Worth,TX) |
| 43 | 1296 | June-Reg | Michael Brenly | | c | 18 | 10/14/1986 | 6-3 | 210 | R | R | College | | Notre Dame Prep High School (Scottsdale,AZ) |
| 44 | 1325 | June-Reg | Eddie Rush | | of | 18 | 1/4/1987 | 5-11 | 170 | R | R | College | | Westlake High School (McDonough,GA) |
| 45 | 1354** | June-Reg | Corey Madden | | RHP | 21 | 3/30/1984 | 6-1 | 195 | R | R | A+ | | St. Mary's College of California |
| 46 | 1383 | June-Reg | Luther Murphy | | 1B | 19 | 3/15/1986 | 6-4 | 225 | R | R | Rookie | | Miami Lakes High School (Hialeah,FL) |
| 47 | 1412 | June-Reg | Mario Williams | | c | 17 | 7/4/1987 | 6-2 | 220 | R | R | - | | Hillsborough High School (Tampa,FL) |
| 48 | 1440 | June-Reg | Andy Hawranick | | c | | | | | | | College | | Georgia Tech |
| 49 | 1467** | June-Reg | Kyle Mura | | 3b | 20 | 11/24/1984 | 6-4 | 215 | R | R | A+ | | Loyola Marymount University |
| 50 | 1494 | June-Reg | Steve Morlock | | RHP | | | | | | | College | | University of California-Santa Barbara |
| |