| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 3 | June-Reg | Jeff Clement | $$ | c | 21 | 8/21/1983 | 6-1 | 210 | L | R | MLB | 2007-2008 | USC |
| 4 | 113 | June-Reg | Justin Thomas | | lhp | 21 | 1/18/1984 | 6-3 | 220 | L | L | AAA | | Youngstown State University |
| 5 | 143 | June-Reg | Stephen Kahn | | rhp | 21 | 12/14/1983 | 6-3 | 215 | L | R | AA | | Loyola Marymount University |
| 6 | 173 | June-Reg | Lance Lynn | | rhp | 18 | 5/12/1987 | 6-5 | 250 | R | R | College | | Brownsburg High School (Brownsburg,IN) |
| 7 | 203 | June-Reg | Robert Rohrbaugh | | LHP | 21 | 12/28/1983 | 6-2 | 195 | R | R | AAA | | Clemson University |
| 8 | 233 | June-Reg | David Asher | | LHP | 22 | 2/18/1983 | 6-1 | 195 | R | L | AAA | | Florida International University |
| 9 | 263 | June-Reg | Bryan Sabatella | | 3b | 20 | 11/1/1984 | 6-4 | 220 | R | R | A | | Quinnipiac University |
| 10 | 293 | June-Reg | Ronnie Prettyman | | 3B | 23 | 8/4/1981 | 6-2 | 190 | L | R | AAA | | California State University, Fullerton |
| 11 | 323 | June-Reg | Brian Contreras | | of | 17 | 8/10/1987 | 6-2 | 175 | B | R | - | | Puerto Rico Baseball Academy High School (Gurabo,PR) |
| 12 | 353 | June-Reg | Anthony Varvaro | | rhp | 20 | 10/31/1984 | 6-0 | 180 | R | R | A+ | | St. John's University |
| 13 | 383 | June-Reg | Reed Eastley | | ss | 21 | 7/24/1983 | 6-2 | 210 | L | R | A+ | | Niagara University |
| 14 | 413** | June-Reg | Brad Boyer | | 2B | 21 | 10/4/1983 | 6-0 | 185 | L | R | AA | | University of Arizona |
| 15 | 443** | June-Reg | John Holdzkom | | RHP | 17 | 10/19/1987 | 6-7 | 225 | R | R | A | | Rancho Cucamonga High School (Rancho Cucamonga,CA) |
| 16 | 473** | June-Reg | Grant Gerrard | | of | 21 | 5/1/1984 | 6-4 | 220 | L | L | A+ | | Southern Illinois University |
| 17 | 503 | June-Reg | James Russell | | LHP | 19 | 1/8/1986 | 6-4 | 205 | L | L | AA | | Navarro College |
| 18 | 533 | June-Reg | Curtis Ledbetter | | 1b | 23 | 12/26/1981 | 6-3 | 220 | R | R | A+ | | University of Nebraska |
| 19 | 563 | June-Reg | Brett Bannister | | rhp | 22 | 3/3/1983 | 6-1 | 190 | R | R | Rookie | | USC |
| 20 | 593 | June-Reg | Travis Scott | | c | 20 | 4/24/1985 | 6-3 | 220 | L | R | A+ | | Lincoln Land Community College |
| 21 | 623 | June-Reg | Nick Allen | | RHP | 22 | 6/15/1983 | 6-1 | 210 | R | R | A+ | | Villanova University |
| 22 | 653 | June-Reg | Alex Gary | | of | 21 | 10/11/1983 | 6-3 | 225 | R | R | AAA | | Virginia Commonwealth University |
| 23 | 683 | June-Reg | Ryan Lindgren | | rhp | 18 | 8/9/1986 | 6-3 | 185 | R | R | - | | Stillwater Area High School (Stillwater,MN) |
| 24 | 713 | June-Reg | Kevin Gergel | | C | 23 | 11/15/1981 | 6-4 | 225 | L | R | A+ | | Kennesaw State University |
| 25 | 743 | June-Reg | William Brown | | lhp | 17 | 10/9/1987 | 6-4 | 215 | L | L | A- | | Downey High School (Modesto,CA) |
| 26 | 773 | June-Reg | Ari Kafka | | RHP | 21 | 12/14/1983 | 6-6 | 230 | R | R | A- | | Quinnipiac University |
| 27 | 803 | June-Reg | Jeremy Hill | | rhp | 18 | 8/12/1986 | 6-7 | 240 | R | R | - | | Ohlone College |
| 28 | 833 | June-Reg | Lance Beus | | lhp | 22 | 3/11/1983 | 6-1 | 180 | L | L | A+ | | Brigham Young University |
| 29 | 863 | June-Reg | Eric Thomas | | OF | 18 | 10/8/1986 | 5-11 | 170 | R | R | - | | Buchholz High School (Gainesville,FL) |
| 30 | 893 | June-Reg | Aric Van Gaalen | | lhp | 20 | 8/25/1984 | 6-6 | 185 | R | L | Ind | | Lethbridge (Alberta) Community College |
| 31 | 923 | June-Reg | Jeff Gilmore | | rhp | 21 | 9/29/1983 | 6-2 | 200 | R | R | A | | Stanford University |
| 32 | 953 | June-Reg | Corby Heckman | | 2B | 23 | 10/30/1981 | 6-1 | 185 | R | R | A | | Indiana University |
| 33 | 983 | June-Reg | Julian Henson | | c | 18 | 4/10/1987 | 5-10 | 190 | R | R | AA | | Cordova High School (Cordova,TN) |
| 34 | 1013 | June-Reg | Andrew Schneider | | RHP | 18 | 4/6/1987 | 6-2 | 185 | R | R | - | | Franklin High School (Franklin,TX) |
| 35 | 1043 | June-Reg | Blake Amador | | of | 19 | 2/26/1986 | 6-1 | 175 | L | L | College | | Modesto Junior College |
| 36 | 1073 | June-Reg | Max Kwan | | c | 18 | 12/30/1986 | 6-2 | 210 | R | R | College | | |
| 37 | 1103 | June-Reg | Jesse Costa | | RHP | 18 | 4/2/1987 | 6-1 | 210 | R | R | - | | Magnolia High School (Anaheim,CA) |
| 38 | 1133** | June-Reg | Joe Agreste | | 1b | 18 | 4/10/1987 | 6-2 | 175 | L | L | - | | Greenbrier Christian Academy High School (Chesapeake,VA) |
| 39 | 1163 | June-Reg | Duke Welker | | rhp | 19 | 2/10/1986 | 6-7 | 220 | L | R | A | | Seminole State College |
| 40 | 1192 | June-Reg | Eugene Edwards | | OF | 20 | 5/17/1985 | 6-6 | 215 | L | R | College | | Long Beach City College |
| 41 | 1221 | June-Reg | Joseph White | | 1b | 19 | 1/14/1986 | 6-3 | 210 | L | R | A | | Georgia Perimeter College |
| 42 | 1250 | June-Reg | Kevin Ryenolds | | OF | 22 | 7/1/1982 | 6-1 | 185 | L | L | - | | Quincy University |
| 43 | 1279** | June-Reg | Philip Roy | | rhp | 17 | 7/29/1987 | 6-4 | 175 | R | R | A- | | Southridge High School (Miami,FL) |
| 44 | 1308** | June-Reg | Paul David Patterson | | rhp | 21 | 5/8/1984 | 6-7 | 200 | R | R | A | | Northern Kentucky University |
| 45 | 1337 | June-Reg | Luis Coste | | OF | | | | | | | - | | Cochise College |
| 46 | 1366 | June-Reg | Worth Lumry | | LHP | 22 | 2/2/1983 | 6-3 | 210 | L | L | Rookie | | Princeton University |
| 47 | 1395 | June-Reg | Andy Hargrove | | 1b | 23 | 10/31/1981 | 6-1 | 240 | R | L | AA | | Kent State University |
| 48 | 1423 | June-Reg | Matt Gardner | | rhp | 20 | 11/2/1984 | 6-2 | 230 | R | R | College | | Grayson County Junior College |
| 49 | 1450 | June-Reg | Dennis Raben | | 1b | 17 | 7/31/1987 | 6-3 | 220 | L | L | College | | St. Thomas Aquinas High School (Fort Lauderdale,FL) |
| 50 | 1477 | June-Reg | Xavier Scruggs | | 1B | 17 | 9/23/1987 | 6-1 | 220 | R | R | College | | Poway High School (Poway,CA) |
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