| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 17 | June-Reg | C.J. Henry | $$ | ss | 19 | 5/31/1986 | 6-3 | 205 | R | R | A | | Putnam City High School (Oklahoma City,OK) |
| 2 | 63 | June-Reg | J.B. Cox | $$ | rhp | 21 | 5/13/1984 | 6-3 | 205 | L | R | AA | | University of Texas |
| 3 | 109 | June-Reg | Brett Gardner | | OF | 21 | 8/24/1983 | 5-10 | 180 | L | L | AAA | | College of Charleston |
| 4 | 139 | June-Reg | Lance Pendleton | | rhp | 21 | 9/10/1983 | 6-3 | 195 | L | R | A- | | Rice University |
| 5 | 169 | June-Reg | Zach Kroenke | | lhp | 21 | 4/21/1984 | 6-3 | 210 | R | L | AA | | University of Nebraska |
| 6 | 199 | June-Reg | Doug Fister | | rhp | 21 | 2/4/1984 | 6-8 | 185 | L | R | AA | | Fresno State University |
| 7 | 229 | June-Reg | Garrett Patterson | | LHP | 23 | 5/11/1982 | 6-0 | 222 | L | L | A+ | | University of Oklahoma |
| 8 | 259 | June-Reg | Austin Jackson | | OF | 18 | 2/1/1987 | 6-1 | 185 | R | R | A+ | | Ryan High School (Denton,TX) |
| 9 | 289 | June-Reg | James Cooper | | of | 21 | 2/18/1984 | 5-10 | 190 | L | R | A+ | | Loyola Marymount University |
| 10 | 319 | June-Reg | Kyle Anson | | 3B | 22 | 4/21/1983 | 6-0 | 200 | B | R | A | | Texas State University |
| 11 | 349 | June-Reg | Alan Horne | | P | 22 | 1/5/1983 | 6-4 | 195 | R | R | AA | | University of Florida |
| 12 | 379 | June-Reg | Joe Muich | | c | | | | | | | AA | | Wichita State University |
| 13 | 409 | June-Reg | Karl Amonite | | 1b | | | | | | | College | | Auburn University |
| 14 | 439 | June-Reg | Joel Perez | | OF | 23 | 3/28/1982 | 5-10 | 190 | R | R | Rookie | | |
| 15 | 469 | June-Reg | Josh Schmidt | | RHP | 22 | 11/14/1982 | 6-4 | 175 | R | R | A+ | | University of the Pacific |
| 16 | 499 | June-Reg | Chris Malec | | 2b | 22 | 8/28/1982 | 5-11 | 195 | R | R | A+ | | University of California-Santa Barbara |
| 17 | 529 | June-Reg | Keaton Everitt | | RHP | 22 | 2/4/1983 | 6-7 | 220 | R | R | A | | University of Washington |
| 18 | 559 | June-Reg | Joe Burke | | c | 21 | 12/16/1983 | 6-0 | 195 | L | R | A+ | | St. John's University |
| 19 | 589 | June-Reg | Jim Conroy | | rhp | 22 | 11/4/1982 | 6-3 | 190 | R | R | A | | University of Illinois |
| 20 | 619 | June-Reg | Bryan Rueger | | lhp | 22 | 2/22/1983 | 6-3 | 185 | L | L | A+ | | Southern Illinois University |
| 21 | 649 | June-Reg | Hanseld Diaz | | C | 20 | 9/20/1984 | 6-1 | 200 | R | R | - | | Miami-Dade College |
| 22 | 679** | June-Reg | Michael Lee | | rhp | 18 | 11/18/1986 | 6-5 | 190 | R | R | - | | Skyline High School (Sammamish,WA) |
| 23 | 709 | June-Reg | Matt Wallach | | c | 19 | 2/17/1986 | 6-2 | 210 | L | R | Rookie | | Cypress College |
| 24 | 739 | June-Reg | Justin Phillabaum | | 1B | 19 | 4/18/1986 | 6-3 | 210 | R | R | Rookie | | Indian River Community College |
| 25 | 769 | June-Reg | Brad Canada | | c | 22 | 8/12/1982 | 6-1 | 210 | R | R | A- | | Bradley University |
| 26 | 799 | June-Reg | Patrick Caldwell | | LHP | | | | | | | - | | Yavapai College |
| 27 | 829** | June-Reg | Joshua Morgan | | rhp | 20 | 7/15/1984 | 6-2 | 200 | R | R | - | | University of Missouri, St. Louis |
| 28 | 859 | June-Reg | Derek Duclos | | rhp | | | | | | | College | | University of Richmond |
| 29 | 889** | June-Reg | Justin Turner | | 2B | 20 | 11/23/1984 | 5-11 | 180 | R | R | A+ | | California State University, Fullerton |
| 30 | 919 | June-Reg | Cameron Johnson | | of | 18 | 7/7/1986 | 6-3 | 195 | R | R | College | | Community College of Southern Nevada |
| 31 | 949 | June-Reg | Clint Preisendorfer | | lhp | 18 | 7/11/1986 | 6-5 | 215 | L | L | - | | Palomar College |
| 32 | 979 | June-Reg | Jared Souza | | LHP | 20 | 3/13/1985 | 6-3 | 198 | L | L | - | | Navarro College |
| 33 | 1009 | June-Reg | Michael Miotkowski | | rhp | 23 | 11/14/1981 | 6-5 | 245 | R | R | - | | Oklahoma City University |
| 34 | 1039 | June-Reg | Felipe Garcia | | 1B | 22 | 5/15/1983 | 6-3 | 225 | R | R | A+ | | California State University, Fullerton |
| 35 | 1069 | June-Reg | Andy Carter | | rhp | 22 | 3/9/1983 | 6-4 | 215 | R | R | Rookie | | Davidson College |
| 36 | 1099** | June-Reg | Brett Summers | | rhp | 18 | 3/26/1987 | 6-6 | 185 | R | R | - | | Lake Central High School (St. John,IN) |
| 37 | 1129 | June-Reg | Jesse Bahr | | LHP | 22 | 1/30/1983 | 6-2 | 200 | L | L | A- | | Missouri Baptist University |
| 38 | 1159 | June-Reg | Clay Young | | lhp | 19 | 10/14/1985 | 6-5 | 220 | L | L | - | | Glendale Community College (CA) |
| 39 | 1188 | June-Reg | Miguel Ruiz | | rhp | 18 | 10/2/1986 | 6-2 | 188 | R | R | - | | South Hills High School (Fort Worth,TX) |
| 40 | 1217 | June-Reg | Michael Roskopf | | 1B | 19 | 12/27/1985 | 6-7 | 220 | L | R | College | | Community College of Southern Nevada |
| 41 | 1246 | June-Reg | Chris Valencia | | of | 18 | 4/25/1987 | 6-1 | 195 | L | R | - | | Westchester High School (Los Angeles,CA) |
| 42 | 1275 | June-Reg | Josh Styes | | RHP | 18 | 8/4/1986 | 6-3 | 190 | R | R | - | | Clay Chalkville High School (Pinson,AL) |
| 43 | 1304 | June-Reg | Brady Salter | | rhp | 22 | 12/26/1982 | 6-5 | 220 | R | R | Rookie | | Aurora University |
| 44 | 1333 | June-Reg | Justin Keadle | | rhp | 22 | 12/6/1982 | 6-2 | 211 | R | R | A- | | Wake Forest University |
| 45 | 1362** | June-Reg | Brett Pill | | 1B | 20 | 9/9/1984 | 6-4 | 215 | R | R | A | | California State University, Fullerton |
| 46 | 1391 | June-Reg | Eric Wordekemper | | RHP | 21 | 8/8/1983 | 6-1 | 200 | R | R | AAA | | Creighton University |
| 47 | 1419 | June-Reg | Eric Hanlon | | of | 18 | 10/2/1986 | 6-3 | 185 | L | R | - | | Martin High School (Arlington,TX) |
| 48 | 1447 | June-Reg | Andrew Rice | | of | 20 | 1/6/1985 | 6-1 | 195 | L | L | - | | Itawamba Community College |
| 49 | 1474 | June-Reg | Diallo Fon | | of | 18 | 10/3/1986 | 6-0 | 185 | L | L | College | | Las Lomas High School (Walnut Creek,CA) |
| 50 | 1501 | June-Reg | Blake Heym | | C | 20 | 1/4/1985 | 6-2 | 195 | L | R | - | | Grayson County Junior College |
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