| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 2 | 66 | June-Reg | Grant Johnson | $$ | P | 21 | 5/26/1983 | 6-6 | 220 | R | R | AA | | University of Notre Dame |
| 3 | 96 | June-Reg | Mark Reed | $$ | C | 18 | 4/13/1986 | 5-11 | 175 | L | R | A+ | | Bonita High School (La Verne,CA) |
| 4 | 126 | June-Reg | Chris Shaver | | P | 22 | 8/21/1981 | 6-7 | 235 | L | L | AAA | | College of William and Mary |
| 5 | 156 | June-Reg | Adrian Ortiz | | OF | | | | | | | - | | Puerto Rico Baseball Academy High School (Gurabo,PR) |
| 6 | 186 | June-Reg | Tim Layden | | P | 21 | 12/22/1982 | 6-2 | 180 | L | L | AA | | Duke University |
| 7 | 216 | June-Reg | Mitch Atkins | | P | 18 | 10/1/1985 | 6-3 | 210 | R | R | AA | | Northeast Guilford High School (McLeansville,NC) |
| 8 | 246 | June-Reg | Eric Patterson | | 2B | 21 | 4/8/1983 | 5-11 | 173 | L | R | MLB | 2007-2008 | Georgia Tech |
| 9 | 276 | June-Reg | Ryan Norwood | | 1B | 21 | 2/18/1983 | 6-4 | 220 | R | L | A+ | | East Carolina University |
| 10 | 306 | June-Reg | Sam Fuld | | OF | 22 | 11/20/1981 | 5-10 | 180 | L | L | MLB | 2007-2007 | Stanford University |
| 11 | 336 | June-Reg | Jonathan Hunton | | P | 21 | 11/30/1982 | 6-9 | 230 | R | R | A+ | | Lamar University |
| 12 | 366 | June-Reg | Sean Gallagher | | P | 18 | 12/30/1985 | 6-1 | 210 | R | R | MLB | 2007-2008 | St. Thomas Aquinas High School (Fort Lauderdale,FL) |
| 13 | 396 | June-Reg | Ryan Moorer | | P | 18 | 3/2/1986 | 6-3 | 205 | R | R | A | | Veterans Memorial High School (Peabody,MA) |
| 14 | 426** | June-Reg | Eli Iorg | | OF | 21 | 3/14/1983 | 6-3 | 200 | R | R | AA | | University of Tennessee |
| 15 | 456 | June-Reg | Alfred Joseph | | OF | 17 | 7/25/1986 | 5-11 | 185 | R | R | A+ | | Moody High School (Corpus Christi,TX) |
| 16 | 486 | June-Reg | J.R. Mathes | | P | 22 | 11/9/1981 | 6-3 | 205 | L | L | AAA | | Western Michigan University |
| 17 | 516 | June-Reg | Jerry Blevins | | P | 20 | 9/6/1983 | 6-6 | 185 | L | L | MLB | 2007-2007 | University of Dayton |
| 18 | 546 | June-Reg | Jake Marsello | | P | 21 | 12/17/1982 | 6-2 | 210 | R | R | Rookie | | Boston College |
| 19 | 576** | June-Reg | Micah Owings | | P | 21 | 9/28/1982 | 6-5 | 220 | R | R | MLB | 2007-2008 | Georgia Tech |
| 20 | 606** | June-Reg | Trey Taylor | | P | | | | | | | College | | Baylor University |
| 21 | 636 | June-Reg | Will Fenton | | P | 21 | 4/7/1983 | 6-2 | 205 | R | R | A | | University of Washington |
| 22 | 666 | June-Reg | Walter Diaz | | SS | | | | | | | - | | Braddock High School (Miami,FL) |
| 23 | 696 | June-Reg | Chris Gaskin | | 1B | 21 | 6/30/1983 | 6-2 | 190 | R | R | A- | | Manhattan College |
| 24 | 726 | June-Reg | Jeff Culpepper | | OF | 22 | 12/30/1981 | 6-1 | 180 | L | R | A+ | | Gonzaga University |
| 25 | 756** | June-Reg | Casey Erickson | | P | 18 | 8/28/1985 | 6-3 | 187 | R | R | A | | Glenwood High School (Chatham,IL) |
| 26 | 786 | June-Reg | Paul Cinder | | P | | | | | | | - | | Lake Mary High School (Lake Mary,FL) |
| 27 | 816 | June-Reg | Jason Kosow | | P | 21 | 8/22/1982 | 6-3 | 200 | R | R | A- | | Babson College |
| 28 | 846 | June-Reg | Jonathan Douillard | | C | 22 | 1/24/1982 | 6-0 | 190 | L | R | A | | Vanderbilt University |
| 29 | 876 | June-Reg | Mike Svetlic | | 2B | | | | | | | College | | UCLA |
| 30 | 906 | June-Reg | Russ Canzler | | 3B | 18 | 4/11/1986 | 6-2 | 190 | R | R | A+ | | Hazleton Area High School (Hazleton,PA) |
| 31 | 936 | June-Reg | Jesse Estrada | | P | 20 | 10/27/1983 | 6-8 | 225 | R | R | AA | | Grayson County Junior College |
| 32 | 966** | June-Reg | Cody Gilbert | | 3B | 18 | 8/21/1985 | 6-3 | 185 | R | R | A- | | Lincoln High School (Vincennes,IN) |
| 33 | 996 | June-Reg | Randy Brown | | OF | 18 | 11/12/1985 | 6-0 | 172 | R | R | Rookie | | Jonesboro High School (Jonesboro,GA) |
| 34 | 1026** | June-Reg | Dustin Bamberg | | C | | | | | | | College | | Winter Haven High School (Winter Haven,FL) |
| 35 | 1056** | June-Reg | Drew O'Connell | | P | 18 | 5/11/1986 | 6-3 | 210 | R | R | - | | Barrington High School (Barrington,IL) |
| 36 | 1086** | June-Reg | Colby Wark | | P | | | | | | | College | | Redmond High School (Redmond,OR) |
| 37 | 1116** | June-Reg | Michael Hyle | | P | 22 | 2/20/1982 | 6-2 | 200 | R | R | A | | University of Georgia |
| 38 | 1146 | June-Reg | Kurt Eichorn | | OF | | | | | | | College | | Kent State University |
| 39 | 1176** | June-Reg | Trent Luyster | | P | 21 | 6/9/1983 | 6-3 | 195 | L | L | College | | Ohio State University |
| 40 | 1206 | June-Reg | Marcus Crockett | | OF | 17 | 1/20/1987 | 5-10 | 190 | L | L | A- | | St. Bernard High School (Playa del Ray,CA) |
| 41 | 1236 | June-Reg | Kenn Kasparek | | P | 18 | 9/23/1985 | 6-8 | 200 | R | R | College | | Weimar High School (Weimar,TX) |
| 42 | 1265 | June-Reg | Ryan Morgan | | 3B | 21 | 8/13/1982 | 6-1 | 180 | L | R | Ind | | Boston College |
| 43 | 1294** | June-Reg | Adam Daniels | | P | 21 | 8/16/1982 | 6-2 | 190 | L | L | AA | | Eastern Oklahoma State Community College |
| 44 | 1323 | June-Reg | Zane Green | | OF | 22 | 5/17/1982 | 5-10 | 180 | L | L | Rookie | | Clemson University |
| 45 | 1352 | June-Reg | Christopher Dunkin | | C | | | | | | | - | | LaPorte High School (LaPorte,TX) |
| 46 | 1381 | June-Reg | Greg Fudacz | | P | | | | | | | - | | Cle Elum-Roslyn High School (Cle Elum,WA) |
| 47 | 1410 | June-Reg | Andrew Liebel | | P | 18 | 3/22/1986 | 6-1 | 195 | R | R | College | | Damien High School (La Verne,CA) |
| 48 | 1438 | June-Reg | Olin Wick | | C | 22 | 5/6/1982 | 6-0 | 180 | B | R | AA | | University of Puget Sound |
| 49 | 1466 | June-Reg | Brandon Harmon | | P | 19 | 5/10/1985 | 6-5 | 200 | R | R | College | | Columbia Basin College |
| 50 | 1494 | June-Reg | Gerald Miller | | OF | 22 | 4/25/1982 | 5-11 | 180 | L | R | Ind | | Prairie View A&M University |
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