| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 2 | 71 | June-Reg | Eric Campbell | $$ | 3B | 18 | 8/6/1985 | 6-0 | 195 | R | R | A+ | | Gibson Southern High School (Fort Branch,IN) |
| 3 | 101 | June-Reg | J.C. Holt | | 2B | 21 | 12/9/1982 | | | | | AAA | | Louisiana State University |
| 4 | 131 | June-Reg | James Parr | | P | 18 | 2/27/1986 | 6-1 | 185 | R | R | AA | | La Cueva High School (Albuquerque,NM) |
| 5 | 161 | June-Reg | Van Pope | | 3B | 20 | 2/26/1984 | 6-1 | 195 | R | R | AA | | Meridian Community College |
| 6 | 191 | June-Reg | Clint Sammons | | C | 21 | 5/15/1983 | 6-1 | 200 | R | R | MLB | 2007-2007 | University of Georgia |
| 7 | 221 | June-Reg | Trae Wiggins | | P | 21 | 10/15/1982 | 6-3 | 195 | L | L | A | | Brewton-Parker College (Ga.) |
| 8 | 251 | June-Reg | Derrick Arnold | | SS | 20 | 8/3/1983 | 5-10 | 160 | R | R | A+ | | Tallahassee Community College |
| 9 | 281 | June-Reg | Jeff Katz | | P | 18 | 4/18/1986 | 6-4 | 217 | R | R | Rookie | | Cheshire High School (Cheshire,CT) |
| 10 | 311 | June-Reg | Brady Endl | | P | 22 | 4/14/1982 | 6-5 | 235 | R | L | AA | | University of Wisconsin, Whitewater |
| 11 | 341 | June-Reg | Wes Letson | | P | 21 | 9/13/1982 | 6-0 | 200 | L | L | AA | | Birmingham-Southern College |
| 12 | 371 | June-Reg | Jeff Long | | P | 22 | 11/4/1981 | 6-4 | 200 | R | R | A | | Gardner-Webb University |
| 13 | 401 | June-Reg | Todd Blackford | | P | 19 | 6/10/1985 | 6-3 | 200 | L | R | A+ | | Triton High School (Bourbon,IN) |
| 14 | 431 | June-Reg | Mike Rozema | | SS | 22 | 9/16/1981 | 6-2 | 169 | L | R | AAA | | St. John's University |
| 15 | 461 | June-Reg | Jason Paul | | P | 22 | 10/10/1981 | 6-3 | 200 | R | R | A | | Southern New Hampshire University |
| 16 | 491 | June-Reg | Zach Schreiber | | P | 22 | 6/24/1982 | 6-1 | 200 | R | R | AAA | | Duke University |
| 17 | 521 | June-Reg | Jon Mark Owings | | OF | 19 | 4/4/1985 | 6-4 | 192 | R | R | A | | Bishop Kenny High School (Jacksonville,FL) |
| 18 | 551 | June-Reg | Brad Emaus | | SS | 18 | 3/28/1986 | 6-0 | 190 | R | R | A- | | East Coweta High School (Sharpsburg,GA) |
| 19 | 581 | June-Reg | Daniel Brezeale | | SS | 18 | 5/13/1986 | 5-11 | 200 | R | R | A | | Berkeley High School (Moncks Corner,SC) |
| 20 | 611** | June-Reg | Christopher Marrero | | OF | 15 | 7/2/1988 | 6-3 | 210 | R | R | A+ | | Monsignor Pace High School (Opa Locka,FL) |
| 21 | 641 | June-Reg | Tyler Wilson | | P | 17 | 7/11/1986 | 6-1 | 190 | L | L | A+ | | Andalusia High School (Andalusia,AL) |
| 22 | 671 | June-Reg | Troy Harp | | C | 22 | 11/5/1981 | 6-0 | 190 | R | R | Rookie | | Middle Tennessee State University |
| 23 | 701 | June-Reg | Austin Hyatt | | P | | | | | | | College | | Marietta High School (Marietta,GA) |
| 24 | 731** | June-Reg | Josh Flores | | OF | 18 | 11/18/1985 | 6-0 | 195 | R | R | AA | | Lincoln Way High School (New Lenox,IL) |
| 25 | 761 | June-Reg | Judson Norton | | P | | | | | | | - | | Manatee Community College |
| 26 | 791 | June-Reg | Adam Parliament | | OF | 18 | 12/16/1985 | 6-3 | 210 | R | R | A+ | | El Paso Community College |
| 27 | 821** | June-Reg | Tyler Flowers | | C-1B | 18 | 1/24/1986 | 6-4 | 220 | R | R | A | | Blessed Trinity High School (Marietta,GA) |
| 28 | 851 | June-Reg | Joey Leiberman | | 1B | | | | | | | - | | Meridian Community College |
| 29 | 881 | June-Reg | Trevion Griffin | | OF | 19 | 11/8/1984 | 5-11 | 175 | R | R | Rookie | | Lurleen B. Wallace Community College |
| 30 | 911 | June-Reg | Kurt Houck | | P | | | | | | | College | | Boyertown High School (Boyertown,PA) |
| 31 | 941 | June-Reg | Jamie Richmond | | P | 18 | 3/23/1986 | 6-4 | 190 | R | R | A | | Cawthraw Secondary School High School (Mississauga,ON) |
| 32 | 971** | June-Reg | Clay Caulfield | | P | | | | | | | College | | Lawrence Park Collegiate High School (Toronto,ON) |
| 33 | 1001 | June-Reg | Brian Murphy | | P | | | | | | | - | | Torrey Pines High School (San Diego,CA) |
| 34 | 1031** | June-Reg | Luis Sanchez | | SS | 17 | 5/27/1987 | 6-0 | 150 | B | R | A+ | | Puerto Rico Baseball Academy High School (Gurabo,PR) |
| 35 | 1061 | June-Reg | Shawn Lee | | C | | | | | | | - | | Gosnell High School (Gosnell,AR) |
| 36 | 1091 | June-Reg | Phillip Britton | | C | 19 | 9/25/1984 | 6-0 | 180 | R | R | AA | | Olney Central College |
| 37 | 1121 | June-Reg | Joshua Ward | | P | 18 | 4/1/1986 | 6-3 | 190 | R | R | A | | Seminole County High School (Donalsonville,GA) |
| 38 | 1151 | June-Reg | Ryan Horton | | P | | | | | | | - | | Bishop Moore High School (Orlando,FL) |
| 39 | 1181 | June-Reg | Sean Doolittle | | P | 17 | 9/26/1986 | 6-3 | 190 | L | L | A+ | | Shawnee High School (Medford,NJ) |
| 40 | 1211 | June-Reg | Jared Shaffer | | SS | 18 | 3/27/1986 | 6-2 | 170 | R | R | A | | Kiski Area High School (Leechburg,PA) |
| 41 | 1240 | June-Reg | Steven Creswell | | P | | | | | | | - | | Rim of the World High School (Lake Arrowhead,CA) |
| 42 | 1269 | June-Reg | Eric Farris | | SS | 18 | 3/3/1986 | 5-10 | 170 | R | R | Rookie | | Hamilton High School (Chandler,AZ) |
| 43 | 1298 | June-Reg | Adam Myers | | P | | | | | | | - | | Herbert Hoover High School (Clendenin,WV) |
| 44 | 1327** | June-Reg | Daniel Rios | | 1B | 18 | 7/10/1985 | 6-4 | 184 | L | L | A- | | College of the Sequoias |
| 45 | 1356 | June-Reg | Jesse Warren | | P | 18 | 3/21/1986 | 6-3 | 180 | L | L | Rookie | | Western Alamance High School (Burlington,NC) |
| 46 | 1385 | June-Reg | Marcus Covington | | P | 19 | 5/17/1985 | 6-0 | 185 | R | R | A+ | | Louisburg College |
| 47 | 1414 | June-Reg | Kevin Camacho | | P | | | | | | | - | | Santa Fe High School (Santa Fe Springs,CA) |
| 48 | 1442 | June-Reg | Eric Evans | | P | | | | | | | College | | UMS Wright Prep High School (Mobile,AL) |
| 49 | 1470 | June-Reg | William Tanner | | P | | | | | | | - | | White Knoll High School (Lexington,SC) |
| 50 | 1498 | June-Reg | Eric Gonzalez | | P | | | | | | | College | | Cochise College |
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