| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 12 | June-Reg | Lastings Milledge | $$ | OF | 18 | 4/5/1985 | 6-1 | 180 | R | R | MLB | 2006-2008 | Lakewood Ranch High School (Bradenton,FL) |
| 4 | 109 | June-Reg | Shane Hawk | | P | 21 | 9/10/1981 | 6-4 | 180 | R | L | A+ | | Oklahoma State University |
| 5 | 139 | June-Reg | Corey Coles | | OF | 21 | 1/30/1982 | 6-0 | 180 | L | L | AAA | | University of Louisiana-Lafayette |
| 6 | 169 | June-Reg | Mateo Miramontes | | P | 21 | 12/24/1981 | 6-4 | 200 | R | R | A | | University of Nevada |
| 7 | 199 | June-Reg | Brian Bannister | | P | 22 | 2/28/1981 | 6-1 | 207 | R | R | MLB | 2006-2008 | USC |
| 8 | 229 | June-Reg | Seth Pietsch | | OF | 21 | 9/16/1981 | 5-9 | 195 | R | R | A | | Oregon State University |
| 9 | 259 | June-Reg | Vincent Cordova | | P | 21 | 4/16/1982 | 6-3 | 210 | R | R | AA | | Loyola Marymount University |
| 10 | 289 | June-Reg | David Reaver | | SS | 22 | 5/16/1981 | 5-11 | 185 | R | R | A+ | | University of Richmond |
| 11 | 319 | June-Reg | Andy Sides | | P | 18 | 8/5/1984 | 6-7 | 210 | L | R | Rookie | | De Soto High School (De Soto,MO) |
| 12 | 349 | June-Reg | Tony Piazza | | C | 23 | 6/22/1980 | 6-2 | 215 | R | R | AAA | | Southwest Missouri State University |
| 13 | 379 | June-Reg | Carlos Muniz | | P | 22 | 3/12/1981 | 6-0 | 180 | R | R | MLB | 2007-2008 | Long Beach State University |
| 14 | 409 | June-Reg | Charles Bennett | | C | 21 | 4/2/1982 | 6-2 | 200 | L | R | A | | Armstrong Atlantic State University |
| 15 | 439** | June-Reg | Harold Mozingo | | P | 18 | 3/29/1985 | 6-1 | 175 | R | R | A | | Essex High School (Tappahannock,VA) |
| 16 | 469 | June-Reg | David Smith | | P | 21 | 3/12/1982 | 6-2 | 185 | L | L | A- | | Pfeiffer University |
| 17 | 499 | June-Reg | Ryan Meyers | | P | 17 | 7/17/1985 | 6-5 | 195 | L | R | A+ | | Round Valley High School (Eagar,AZ) |
| 18 | 529** | June-Reg | Kyle McCulloch | | P | 18 | 3/20/1985 | 6-2 | 170 | R | R | AA | | Bellaire High School (Bellaire,TX) |
| 19 | 559 | June-Reg | Ryan Harvey | | OF | 23 | 12/17/1979 | 6-0 | 190 | R | R | A+ | | University of California-Riverside |
| 20 | 589 | June-Reg | Trip Mealor | | P | 18 | 5/20/1985 | 6-4 | 240 | R | R | - | | Oconee County High School (Watkinsville,GA) |
| 21 | 619 | June-Reg | Travis Garcia | | SS | 21 | 4/18/1982 | 6-3 | 215 | R | R | A+ | | Iona College |
| 22 | 649 | June-Reg | Greg Ramirez | | P | 22 | 9/12/1980 | 6-4 | 205 | R | R | A+ | | Pepperdine University |
| 23 | 679 | June-Reg | Dante Brinkley | | OF | 21 | 8/21/1981 | 5-10 | 170 | R | R | AAA | | Southwest Missouri State University |
| 24 | 709 | June-Reg | Troy Fry | | P | 22 | 6/23/1981 | 6-5 | 220 | R | R | Ind | | Berry College (Ga.) |
| 25 | 739 | June-Reg | Evan Maclane | | P | 20 | 11/4/1982 | 6-2 | 170 | L | L | AAA | | Feather River (Calif.) Community College |
| 26 | 769 | June-Reg | Kevin Rios | | SS | 21 | 7/21/1981 | 6-1 | 180 | R | R | AA | | Concordia University (Calif.) |
| 27 | 799** | June-Reg | Deunte Heath | | P | 17 | 8/28/1985 | 6-4 | 205 | R | R | A+ | | Newton High School (Covington,GA) |
| 28 | 829 | June-Reg | Cory Wells | | OF | 18 | 11/18/1984 | 6-0 | 185 | R | R | Rookie | | Plant City High School (Plant City,FL) |
| 29 | 859 | June-Reg | Justin Valdes | | P | 17 | 8/16/1985 | 6-1 | 160 | R | R | - | | Dunedin High School (Dunedin,FL) |
| 30 | 889 | June-Reg | Adam Carr | | P | 19 | 4/1/1984 | 6-2 | 210 | R | R | AA | | West Valley College |
| 31 | 919 | June-Reg | Jordan Newton | | C | 17 | 8/29/1985 | 5-10 | 185 | R | R | A | | Larue County High School (Hodgenville,KY) |
| 32 | 949 | June-Reg | Humberto Gonzalez | | SS | 22 | 3/6/1981 | 5-9 | 166 | R | R | A- | | Feather River (Calif.) Community College |
| 33 | 979 | June-Reg | Abel Newton | | P | 18 | 2/23/1985 | 6-1 | 225 | R | R | College | | Arkansas-Fort Smith Junior College |
| 34 | 1009 | June-Reg | Drew Johnson | | P | 18 | 4/12/1985 | 6-3 | 205 | R | R | - | | Wylie High School (Wylie,TX) |
| 35 | 1039 | June-Reg | Patrick Howe | | P | 18 | 10/23/1984 | 6-3 | 195 | L | L | Ind | | Faith Baptist High School (Longmont,CO) |
| 36 | 1069 | June-Reg | Jim Wallace | | C | 22 | 3/27/1981 | 6-3 | 220 | R | R | Ind | | Santa Clara University |
| 37 | 1099 | June-Reg | Alex Turner | | OF | 19 | 9/25/1983 | 6-2 | 198 | R | R | Rookie | | Catonsville Community College |
| 38 | 1129 | June-Reg | Simon Gagnon | | P | 18 | 11/16/1984 | 6-0 | 175 | L | L | - | | Montmorency (Quebec) College |
| 39 | 1159 | June-Reg | Garrett Young | | 3B | 18 | 9/9/1984 | 6-3 | 225 | R | R | College | | Edison High School (Huntington Beach,CA) |
| 40 | 1189 | June-Reg | Dan Fischer | | P | 20 | 5/19/1983 | | | R | R | - | | Los Angeles Pierce College |
| 41 | 1219 | June-Reg | Mike Bartley | | P | 19 | 5/31/1984 | 6-5 | 215 | R | R | - | | Alleghany County High School (Covington,VA) |
| 42 | 1248 | June-Reg | Brian Baugher | | P | 17 | 12/5/1985 | 6-3 | 210 | R | R | - | | Brunswick High School (Frederick,MD) |
| 43 | 1277 | June-Reg | Mike Chambless | | C | 18 | 2/9/1985 | 6-2 | 175 | R | R | - | | Round Rock High School (Round Rock,TX) |
| 44 | 1305 | June-Reg | Tom Sgueglia | | 3B | 19 | 1/13/1984 | 6-2 | 205 | R | R | Rookie | | Rockland Community College |
| 45 | 1332 | June-Reg | Jean-Michael Rochon-Salvas | | P | 18 | 10/1/1984 | 6-0 | 175 | R | R | - | | Edouard Montpetit High School (Montreal,QC) |
| 46 | 1359 | June-Reg | Joel Thorney | | P | 17 | 8/18/1985 | 6-4 | 180 | R | R | College | | Leaside High School (Toronto,ON) |
| 47 | 1386 | June-Reg | David Torres | | P | 22 | 3/23/1981 | 6-1 | 205 | R | R | A- | | University of Central Florida |
| 48 | 1413 | June-Reg | Jon Malo | | SS | 19 | 9/29/1983 | 6-0 | 180 | R | R | AA | | Miami-Dade College |
| 49 | 1439 | June-Reg | Grover Benton | | OF | 21 | 2/28/1982 | 5-9 | 185 | R | R | College | | Webber International University |
| 50 | 1465 | June-Reg | Lester Aragon | | C | 18 | 7/4/1984 | 5-10 | 185 | L | R | - | | Brito Private High School (Miami,FL) |
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