| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 3 | June-Reg | Chris Gruler | | P | 18 | 9/11/1983 | 6-3 | 210 | R | R | A | | Liberty Union High School (Brentwood,CA) |
| 1 | 40 | June-Reg | Mark Schramek | | P | 22 | 6/2/1980 | 6-3 | 230 | L | R | AA | | University of Texas |
| 2 | 44 | June-Reg | Joey Votto | | 3B | 18 | 9/10/1983 | 6-3 | 200 | L | R | MLB | 2007-2008 | |
| 3 | 75 | June-Reg | Kyle Edens | | P | 22 | 1/25/1980 | 5-10 | 190 | R | R | AA | | Baylor University |
| 4 | 105 | June-Reg | Camilo Vazquez | | P | 18 | 10/3/1983 | 6-0 | 180 | L | L | AA | | Hialeah High School (Hialeah,FL) |
| 5 | 135 | June-Reg | Kevin Howard | | 3B | 21 | 6/25/1981 | 6-2 | 180 | L | R | AAA | | University of Miami (Florida) |
| 6 | 165 | June-Reg | Walter Olmstead | | 1B | 21 | 12/5/1980 | 6-6 | 230 | B | R | A+ | | Texas Christian University |
| 7 | 195 | June-Reg | Corey Wachman | | P | 21 | 10/16/1980 | 6-0 | 180 | R | R | Rookie | | Valdosta State University |
| 8 | 225 | June-Reg | O.J. King | | P | 22 | 9/12/1979 | 6-3 | 215 | R | R | A | | Northwestern State University |
| 9 | 255 | June-Reg | Steve Booth | | C | 22 | 8/14/1979 | 6-1 | 190 | R | R | A | | University of San Francisco |
| 10 | 285 | June-Reg | Frankie Keller | | P | 22 | 1/12/1980 | 6-2 | 220 | L | L | A | | Abilene Christian University |
| 11 | 315 | June-Reg | Mike Bassett | | OF | 22 | 2/10/1980 | 6-2 | 205 | L | L | A | | George Washington University |
| 12 | 345 | June-Reg | Don Gemmell | | P | 22 | 7/15/1979 | 6-1 | 210 | R | R | A | | San Jose State University |
| 13 | 375** | June-Reg | Enrique Cruz | | SS | 20 | 7/13/1981 | 5-10 | 185 | B | R | AA | | Rice University |
| 14 | 405 | June-Reg | Patrick Curran | | P | | | | 0 | | | Rookie | | Fort Hays State University |
| 15 | 435 | June-Reg | Christopher Kamis | | P | | | | 0 | | | - | | Elgin Community College |
| 16 | 465 | June-Reg | Jon George | | P | 17 | 7/6/1984 | 6-3 | 210 | R | R | AA | | Camden Catholic High School (Pennsauken,NJ) |
| 17 | 495 | June-Reg | Ben Lavender | | C | | | | 0 | | | - | | Pelham High School (Pelham,AL) |
| 18 | 525** | June-Reg | Zach McCormack | | P | 20 | 1/18/1982 | 6-2 | 195 | L | L | A+ | | Sacramento City College |
| 19 | 555 | June-Reg | Chris Denorfia | | OF | 21 | 7/15/1980 | 6-1 | 180 | R | R | MLB | 2005-2006 | Wheaton College (Illinois) |
| 20 | 585 | June-Reg | Douglas Coon | | P | | | | 0 | | | - | | Silverado High School (Las Vegas,NV) |
| 21 | 615 | June-Reg | Mike Causey | | P | 20 | 10/22/1981 | 6-5 | 225 | R | R | Ind | | Moorpark College |
| 22 | 645** | June-Reg | Matt Luca | | | | | | | | | College | | Ball High School (Galveston,TX) |
| 23 | 675 | June-Reg | Brian Marine | | | | | | | | | College | | Young Harris College |
| 24 | 705 | June-Reg | Jarrod Schmidt | | OF | 21 | 10/2/1980 | 6-2 | 200 | R | R | A | | Clemson University |
| 25 | 735 | June-Reg | Robert Mosby | | 1B-OF | 20 | 4/9/1982 | 6-3 | 240 | R | R | A | | Northeastern Oklahoma A&M College |
| 26 | 765 | June-Reg | Chris Dunn | | | | | | | | | College | | Chaparral High School (Parker,CO) |
| 27 | 795** | June-Reg | Juan Velazquez | | P | 18 | 10/11/1983 | 6-4 | 190 | R | R | A | | Montgomery High School (San Diego,CA) |
| 28 | 825 | June-Reg | Jay Tust | | 2B | | | | 0 | | | - | | Stadium High School (Tacoma,WA) |
| 29 | 855 | June-Reg | Brad Correll | | 3B | 21 | 6/17/1981 | 6-2 | 200 | R | R | AA | | Limestone College |
| 30 | 885 | June-Reg | Justin Knoff | | P | 21 | 6/22/1981 | 6-4 | 205 | R | R | AA | | Siena College |
| 31 | 915 | June-Reg | Mayque Quintero | | P | 24 | 4/19/1978 | 6-2 | 220 | R | R | A+ | | |
| 32 | 945 | June-Reg | Gerald Smith | | RF | | | | 0 | | | - | | Jefferson High School (Tampa,FL) |
| 33 | 975** | June-Reg | Bart Braun | | P | 20 | 2/8/1982 | 5-10 | 175 | L | L | Ind | | Diablo Valley College |
| 34 | 1005** | June-Reg | Cody McAllister | | P | 18 | 3/21/1984 | 6-2 | 190 | R | R | A+ | | Snohomish High School (Snohomish,WA) |
| 35 | 1035** | June-Reg | Stan Smith | | CF | 18 | 10/21/1983 | 6-4 | 215 | R | R | A | | Towers High School (Decatur,GA) |
| 36 | 1065 | June-Reg | Matthew Krimmel | | 3B | 21 | 9/26/1980 | 6-4 | 200 | L | R | Rookie | | George Washington University |
| 37 | 1095 | June-Reg | Shawn Aichele | | P | 19 | 10/27/1982 | 6-1 | 208 | R | R | Rookie | | Western Hills High School (Cincinnati,OH) |
| 38 | 1125 | June-Reg | Hardy Hutto | | P | | | | 0 | | | College | | Garden City Community College |
| 39 | 1155 | June-Reg | Calvin Medlock | | P | 19 | 11/8/1982 | 5-10 | 195 | R | R | AAA | | Westbury High School (Houston,TX) |
| 40 | 1185 | June-Reg | Chris Bell | | P | 21 | 9/24/1980 | 6-3 | 200 | R | R | Rookie | | Miami-Dade College |
| 41 | 1215** | June-Reg | Marcus Townsend | | OF | 20 | 4/20/1982 | 6-4 | 210 | R | R | Rookie | | University of Texas |
| 42 | 1245 | June-Reg | Danny Kelly | | | | | | | | | College | | Durango High School (Las Vegas,NV) |
| 43 | 1275 | June-Reg | Derek Hawk | | P | 19 | 11/13/1982 | 6-6 | 225 | L | R | A | | Mendocino Junior College |
| 44 | 1303 | June-Reg | Jason Baca | | P | | | | 0 | | | Ind | | Sweeny High School (Sweeny,TX) |
| 45 | 1331 | June-Reg | Dennis Leduc | | | 21 | 10/22/1980 | 6-4 | 205 | R | R | Ind | | Cuesta College |
| 46 | 1358 | June-Reg | Troy Cairns | | SS | 21 | 9/29/1980 | 6-0 | 160 | R | R | AAA | | University of New Mexico |
| 47 | 1384 | June-Reg | Michael Bryant | | P | 18 | 11/9/1983 | 6-6 | 205 | R | R | A+ | | Rayburn High School (Pasadena,TX) |
| 48 | 1410 | June-Reg | Travis Wong | | 1B | 20 | 8/28/1981 | 6-6 | 230 | R | R | A+ | | Texas A&M University |
| 49 | 1436 | June-Reg | Billy Dennis | | OF | 21 | 9/29/1980 | 6-2 | 180 | L | L | Rookie | | University of the Incarnate Word |
| 50 | 1460** | June-Reg | Ben Himes | | OF | 21 | 3/9/1981 | 6-4 | 210 | L | R | A+ | | Texas A&M University |
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