| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 27 | June-Reg | Sergio Santos | | SS | 18 | 7/4/1983 | 6-3 | 190 | R | R | AAA | | Mater Dei High School (Santa Ana,CA) |
| 2 | 68 | June-Reg | Christopher Snyder | | C | 21 | 2/12/1981 | 6-3 | 220 | R | R | MLB | 2004-2008 | University of Houston |
| 3 | 99 | June-Reg | Jared Doyle | | P | 21 | 1/30/1981 | 6-2 | 195 | R | L | AA | | James Madison University |
| 4 | 129 | June-Reg | Lance Cormier | | P | 21 | 8/19/1980 | 6-1 | 190 | R | R | MLB | 2004-2008 | University of Alabama |
| 5 | 159 | June-Reg | Mark Rosen | | P | 18 | 6/30/1984 | 5-11 | 200 | L | L | AA | | Salisbury School High School (Salisbury,CT) |
| 6 | 189 | June-Reg | Brian Barden | | 3B | 21 | 4/2/1981 | 5-11 | 195 | R | R | MLB | 2007-2007 | Oregon State University |
| 7 | 219 | June-Reg | Matthew Henrie | | P | 22 | 11/28/1979 | 6-3 | 195 | L | R | AAA | | Clemson University |
| 8 | 249 | June-Reg | Ryan Mahoney | | H | | | | | | | College | | Carmel High School (Carmel,NY) |
| 9 | 279 | June-Reg | Klent Corley | | P | 21 | 6/26/1981 | 6-5 | 205 | R | R | A- | | Grand Canyon University |
| 10 | 309** | June-Reg | Mike Pierce | | C | 18 | 4/19/1984 | 6-3 | 185 | R | R | - | | Clovis High School (Clovis,CA) |
| 11 | 339 | June-Reg | Neb Brown | | IF | 22 | 11/7/1979 | 6-0 | 190 | L | R | AAA | | Oklahoma State University |
| 12 | 369 | June-Reg | Darren Douglas | | P | | | | 0 | | | - | | Augusta State University |
| 13 | 399 | June-Reg | Adam Haley | | IF | 21 | 9/4/1980 | 6-0 | 175 | L | R | AA | | University of Louisville |
| 14 | 429 | June-Reg | Jay Garthwaite | | OF | 21 | 11/26/1980 | 6-2 | 215 | R | R | AAA | - | University of Washington |
| 15 | 459 | June-Reg | Dustin Nippert | | P | 21 | 5/6/1981 | 6-7 | 210 | R | R | MLB | 2005-2008 | West Virginia University |
| 16 | 489 | June-Reg | Bryan Johnson | | IF | 21 | 2/23/1981 | 6-1 | 205 | B | R | A+ | | University of Washington |
| 17 | 519 | June-Reg | Donnie Saba | | OF | 21 | 3/2/1981 | 5-11 | 190 | L | R | AAA | | University of Utah |
| 18 | 549 | June-Reg | Matt Morgan | | SS | 20 | 8/10/1981 | 6-2 | 190 | R | R | AAA | | Lewis and Clark College |
| 19 | 579 | June-Reg | Sam Smith | | P | 23 | 3/21/1979 | 6-4 | 210 | R | R | A+ | | University of South Alabama |
| 20 | 609 | June-Reg | Jeff Stanek | | 1B | 21 | 8/18/1980 | 6-3 | 220 | L | R | A+ | | Southern Illinois University |
| 21 | 639 | June-Reg | Dan Callahan | | OF | 22 | 11/5/1979 | 6-4 | 205 | L | L | A | | Tufts University |
| 22 | 669 | June-Reg | Kenneth Parker | | 1B | | | | 0 | | | - | | Henry Foss High School (Tacoma,WA) |
| 23 | 699 | June-Reg | Jared Bonnell | | P | 21 | 12/9/1980 | 6-3 | 205 | R | R | A- | | University of Nevada |
| 24 | 729 | June-Reg | Matt Incinelli | | P | 22 | 2/2/1980 | 6-2 | 180 | R | R | A | | University of North Florida |
| 25 | 759 | June-Reg | Bookie Gates | | 2B | 22 | 1/31/1980 | 6-2 | 200 | R | R | A- | | Washington State University |
| 26 | 789 | June-Reg | Wes Gilliam | | P | 22 | 7/31/1979 | 6-5 | 220 | L | L | Rookie | | University of Illinois |
| 27 | 819 | June-Reg | Josh Kranawetter | | P | 22 | 5/21/1980 | 5-10 | 180 | R | R | AA | | Polk Community College |
| 28 | 849 | June-Reg | Sean Luellwitz | | IF | 22 | 11/16/1979 | 6-5 | 230 | R | R | AA | - | Vanderbilt University |
| 29 | 879 | June-Reg | Michael Buss | | P | | | | 0 | | | - | | Wellington Christian High School (Wellington,FL) |
| 30 | 909 | June-Reg | Anthony Isabella | | CF | | | | 0 | | | - | | Chemeketa Community College |
| 31 | 939 | June-Reg | Clint Goocher | | P | 20 | 6/15/1982 | 6-2 | 200 | L | L | AAA | | San Jacinto College-North |
| 32 | 969 | June-Reg | Terry Large | | P | 19 | 5/28/1983 | 6-4 | 185 | R | R | AAA | | Chipola College |
| 33 | 999 | June-Reg | Donta Warfield | | SS | | | | 0 | | | - | | Riverview High School (Riverview,FL) |
| 34 | 1029 | June-Reg | Jesus Albino | | P | | | | 0 | | | - | | Northwest Mississippi Community College |
| 35 | 1059 | June-Reg | Arlow Hanen | | RF | | | | 0 | | | - | | Scottsdale Community College |
| 36 | 1089 | June-Reg | Nicholas Richardson | | C | | | | 0 | | | - | | Elgin Community College |
| 37 | 1119 | June-Reg | Kirk Gross | | P | | | | 0 | | | - | | San Ramon Valley High School (Danville,CA) |
| 38 | 1149** | June-Reg | Matt Falk | | | 17 | 8/25/1984 | 6-3 | 190 | L | R | A | | Dana Hills High School (Dana Point,CA) |
| 39 | 1179 | June-Reg | Grady Symonds | | C | 21 | 1/15/1981 | 6-2 | 180 | R | R | A+ | | University of Hawaii-Manoa |
| 40 | 1209 | June-Reg | Billy Biggs | | P | 22 | 9/9/1979 | 6-1 | 195 | R | R | AA | | West Virginia University |
| 41 | 1239 | June-Reg | Keith Whatley | | P | 22 | 4/23/1980 | 6-2 | 210 | L | L | A+ | | University of Houston |
| 42 | 1269 | June-Reg | Mike Ridgway | | P-RF | | | | 0 | | | - | | Tacoma Community College |
| 43 | 1298** | June-Reg | Kris Krise | | | 18 | 2/1/1984 | 6-6 | 215 | R | R | Rookie | | Crescenta Valley High School (La Crescenta,CA) |
| 44 | 1326 | June-Reg | Conor Lalor | | P | | | | | | | College | | Houston High School (Germantown,TN) |
| 45 | 1353 | June-Reg | Jonathan Crosby | | P | | | | 0 | | | - | | Christian Brothers High School (Memphis,TN) |
| 46 | 1379 | June-Reg | Ryan Gloger | | | 21 | 4/22/1981 | 6-3 | 215 | L | L | College | | University of South Florida |
| 47 | 1405 | June-Reg | Robert Ferns | | P | 21 | 1/4/1981 | 6-4 | 230 | R | R | AAA | | Darton College |
| 48 | 1431** | June-Reg | Ronald Lowe | | P | 18 | 9/6/1983 | 6-1 | 185 | R | L | A | | Ridgewood High School (New Port Richey,FL) |
| 49 | 1456** | June-Reg | Matt Raguse | | | 19 | 9/28/1982 | 6-2 | 195 | R | R | A- | | St. Louis Community College-Forest Park |
| 50 | 1480** | June-Reg | Kyle Reynolds | | | 18 | 9/1/1983 | 6-2 | 190 | L | R | AA | | Second Baptist School High School (Houston,TX) |
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