| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 19 | June-Reg | James Loney | | 1B | 18 | 5/7/1984 | 6-3 | 200 | L | L | MLB | 2006-2008 | Elkins High School (Missouri City,TX) |
| 1 | 31 | June-Reg | Greg Miller | | P | 17 | 11/3/1984 | 6-5 | 190 | L | L | AAA | | Esperanza High School (Anaheim,CA) |
| 2 | 51 | June-Reg | Zach Hammes | | P | 18 | 5/15/1984 | 6-6 | 220 | R | R | AAA | | Iowa City High School (Iowa City,IA) |
| 2 | 60 | June-Reg | Jonathan Broxton | | P | 18 | 6/16/1984 | 6-4 | 240 | R | R | MLB | 2005-2008 | Burke County High School (Waynesboro,GA) |
| 3 | 91 | June-Reg | Mike Nixon | | C | 18 | 8/17/1983 | 6-3 | 210 | R | R | AAA | | Sunnyslope High School (Phoenix,AZ) |
| 4 | 121 | June-Reg | Delwyn Young | | 2B | 20 | 6/30/1982 | 5-10 | 209 | B | R | MLB | 2006-2008 | Santa Barbara City College |
| 5 | 151 | June-Reg | Mike Megrew | | P | 18 | 1/29/1984 | 6-6 | 210 | L | L | AAA | | Chariho Regional High School (Wood River Junction,RI) |
| 6 | 181 | June-Reg | Marshall Looney | | P | 18 | 3/23/1984 | 6-4 | 250 | L | L | A | | La Pine High School (La Pine,OR) |
| 7 | 211 | June-Reg | David Bagley | | DH | 21 | 12/26/1980 | 6-2 | 200 | R | R | A+ | | University of San Diego |
| 8 | 241 | June-Reg | Jamaal Hamilton | | P | 18 | 9/13/1983 | 6-3 | 220 | L | L | AA | | Monterey High School (Lubbock,TX) |
| 9 | 271** | June-Reg | Denver Kitch | | IF | 21 | 11/25/1980 | 6-2 | 180 | R | R | A | | University of Oklahoma |
| 10 | 301 | June-Reg | Ryan Williams | | P | 21 | 11/10/1980 | 6-5 | 205 | R | R | A+ | | Old Dominion University |
| 11 | 331 | June-Reg | James McDonald | | P | 17 | 10/19/1984 | 6-5 | 195 | L | R | AA | | Poly High School (Long Beach,CA) |
| 12 | 361 | June-Reg | Thomas Owen | | C | | | | 0 | | | Rookie | | Wichita State University |
| 13 | 391 | June-Reg | Julio LaSalle | | P | 20 | 9/14/1981 | 6-3 | 210 | R | R | A | | Palm Beach Atlantic University |
| 14 | 421 | June-Reg | Karl Mejlholm | | P | | | | | | | College | | Dover Bay High School (Nanaimo,BC) |
| 15 | 451 | June-Reg | Eric Stults | | P | 22 | 12/9/1979 | 6-3 | 210 | L | L | MLB | 2006-2007 | Bethel High School (Bethel,IN) |
| 16 | 481 | June-Reg | Sambu Ndungidi | | OF | 17 | 5/9/1985 | 6-3 | 200 | B | R | Rookie | | St. Georges High School (Pierrefonds,QC) |
| 17 | 511 | June-Reg | Russell Martin | | 3B | 19 | 2/15/1983 | 5-11 | 200 | R | R | MLB | 2006-2008 | Chipola College |
| 18 | 541** | June-Reg | Curtis Hudson | | C | 18 | 5/1/1984 | | | R | R | - | | Yuba City High School (Yuba City,CA) |
| 19 | 571 | June-Reg | Mike White | | P | 19 | 9/12/1982 | 6-2 | 210 | L | L | A- | | St. Petersburg College |
| 20 | 601 | June-Reg | Andy Walker | | P | 19 | 4/20/1983 | 6-1 | 175 | R | R | AA | | Cowley County Community College |
| 21 | 631 | June-Reg | Brian Tracy | | P | 18 | 12/22/1983 | 6-4 | 220 | R | R | A- | | Claremont High School (Claremont,CA) |
| 22 | 661 | June-Reg | Brett Wayne | | SS | 22 | 4/28/1980 | 6-0 | 170 | R | R | AA | | St. Mary's College of California |
| 23 | 691** | June-Reg | Joshua Bartusick | | 1B-RF | | | | 0 | | | - | | Fountain Valley High School (Fountain Valley,CA) |
| 24 | 721 | June-Reg | Derry Jackson | | CF | 18 | 6/13/1984 | 6-1 | 190 | R | R | Rookie | | Jesuit High School (Portland,OR) |
| 25 | 751 | June-Reg | Alvin Hayes | | P | 18 | 8/19/1983 | 6-6 | 195 | R | R | A- | | Alabama Southern Community College |
| 26 | 781 | June-Reg | Jarod Plummer | | P | 18 | 1/27/1984 | 6-5 | 200 | R | R | AAA | | South Garland High School (Garland,TX) |
| 27 | 811 | June-Reg | Mike Potoczny | | P | 18 | 12/27/1983 | 6-1 | 190 | R | R | Rookie | | North Marion High School (Farmington,WV) |
| 28 | 841** | June-Reg | Robert Ray | | | 18 | 1/21/1984 | 6-5 | 190 | R | R | A+ | | Lufkin High School (Lufkin,TX) |
| 29 | 871 | June-Reg | Dominique Laurin | | SS-2B | 19 | 10/7/1982 | 6-0 | 185 | R | R | A+ | | Eastern Oklahoma State Community College |
| 30 | 901 | June-Reg | Edward Roberts | | P | | | | 0 | | | - | | Key West High School (Key West,FL) |
| 31 | 931 | June-Reg | Ross Hawley | | P | 22 | 12/14/1979 | 6-0 | 175 | R | R | A | | Kansas State University |
| 32 | 961** | June-Reg | Richie Robnett | | RF | 18 | 9/17/1983 | 5-10 | 195 | L | L | AAA | | Santa Barbara City College |
| 33 | 991** | June-Reg | Eduardo Baez | | P | 17 | 10/19/1984 | 6-0 | 172 | R | R | - | | Francis Poly High School (Sun Valley,CA) |
| 34 | 1021** | June-Reg | Doug Mathis | | P | 19 | 6/7/1983 | 6-2 | 218 | R | R | MLB | 2008-2008 | Show Low High School (Show Low,AZ) |
| 35 | 1051** | June-Reg | Matt Long | | | 18 | 2/23/1984 | 6-5 | 220 | R | R | A+ | | Granville High School (Granville,OH) |
| 36 | 1081 | June-Reg | Bryan Goelz | | OF | 22 | 4/10/1980 | 6-1 | 180 | L | L | A+ | | New York Tech |
| 37 | 1111 | June-Reg | Jonathan Riggleman | | 3B | | | | 0 | | | - | | Hillsborough Community College |
| 38 | 1141** | June-Reg | Daniel Forrer | | P | 18 | 11/1/1983 | 6-4 | 185 | L | L | A- | | Jefferson Davis High School (Montgomery,AL) |
| 39 | 1171** | June-Reg | Luke Hochevar | | | 18 | 9/15/1983 | 6-5 | 205 | R | R | MLB | 2007-2008 | Fowler High School (Fowler,CO) |
| 40 | 1201 | June-Reg | Eric Wolfe | | | | | | | | | College | | York Mills |
| 41 | 1231 | June-Reg | Ryan Lennerton | | P | | | | 0 | | | College | | Eastern Oklahoma State Community College |
| 42 | 1261** | June-Reg | Nathan Warrick | | OF | 18 | 9/10/1983 | 6-0 | 165 | L | L | A | | Belton High School (Belton,TX) |
| 43 | 1290 | June-Reg | David Parker | | P | 19 | 4/18/1983 | 6-4 | 180 | R | R | Ind | | Oklahoma City University |
| 44 | 1318 | June-Reg | James Bailie | | C | | | | 0 | | | - | | Kodiak High School (Kodiak,AK) |
| 45 | 1345 | June-Reg | Justin Estrada | | SS | | | | 0 | | | - | | Jesuit High School (Tampa,FL) |
| 46 | 1372 | June-Reg | Mickey Jordan | | OF | 23 | 1/20/1979 | 5-10 | 160 | L | L | Rookie | | Armstrong Atlantic State University |
| 47 | 1398 | June-Reg | Chad Bailey | | P | 19 | 6/24/1983 | 6-4 | 190 | L | L | A+ | | North Idaho Junior College |
| 48 | 1424 | June-Reg | Andre Trahan | | CF | | | 6-5 | 240 | R | R | - | | Yuba (Calif.) Community College |
| 49 | 1449 | June-Reg | Jeffrey Cristy | | C | | | | 0 | | | - | | Southeast High School (Lincoln,NE) |
| 50 | 1473 | June-Reg | Jason Farrand | | C | | | | 0 | | | - | | Conway High School (Conway,SC) |
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