| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 12 | June-Reg | Joe Saunders | | P | 21 | 6/16/1981 | 6-3 | 195 | L | L | MLB | 2005-2008 | Virginia Tech |
| 2 | 53 | June-Reg | Kevin Jepsen | | P | 17 | 7/26/1984 | 6-3 | 200 | R | R | AAA | | Bishop Manogue High School (Reno,NV) |
| 3 | 84 | June-Reg | Kyle Pawelczyk | | P | 20 | 11/18/1981 | 6-5 | 180 | L | L | A | | Chipola College |
| 4 | 114 | June-Reg | Jordan Renz | | OF | 18 | 7/21/1983 | 6-2 | 200 | B | R | AA | | Union High School (Tulsa,OK) |
| 5 | 144 | June-Reg | Javier Rodriguez | | SS | 23 | 1/16/1979 | 5-11 | 178 | R | R | AAA | | University of Miami (Florida) |
| 6 | 174 | June-Reg | Chris Walston | | 1B-OF | 17 | 10/1/1984 | 6-6 | 230 | R | R | A | | El Capitan High School (Lakeside,CA) |
| 7 | 204** | June-Reg | Jeff Leise | | OF | 21 | 9/18/1980 | 5-10 | 165 | L | L | A- | | University of Nebraska |
| 8 | 234 | June-Reg | James Holcomb | | P | 21 | 11/28/1980 | 6-4 | 190 | R | R | AA | | University of Nevada |
| 9 | 264 | June-Reg | Caleb Maher | | OF | 19 | 3/22/1983 | 6-2 | 190 | R | R | A+ | | Ceres High School (Ceres,CA) |
| 10 | 294 | June-Reg | Howie Kendrick | | 2B | 18 | 7/12/1983 | 5-10 | 170 | R | R | MLB | 2006-2008 | St. Johns River Community College |
| 11 | 324 | June-Reg | Aaron Peel | | OF | 19 | 2/8/1983 | 6-1 | 190 | R | R | AA | | Seminole High School (Seminole,TX) |
| 12 | 354 | June-Reg | Ryan Kenning | | LF | 21 | 11/10/1980 | 6-0 | 190 | L | L | Ind | | New Mexico State University |
| 13 | 384 | June-Reg | Ozzie Lugo | | P | 21 | 12/22/1980 | 6-0 | 230 | R | R | A+ | | Florida International University |
| 14 | 414 | June-Reg | Ronnie Ray | | P | 18 | 5/11/1984 | 6-3 | 190 | R | R | AA | | Pacific High School (Pacific,MO) |
| 15 | 444 | June-Reg | Justin Hancock | | OF | 22 | 3/10/1980 | 6-2 | 190 | R | R | A | | Florida Southern College |
| 16 | 474 | June-Reg | Tommy Duenas | | C | 20 | 7/16/1981 | 5-11 | 200 | R | R | AAA | | Florida International University |
| 17 | 504 | June-Reg | Anthony Mandel | | P | | | | 0 | | | - | | Chipola College |
| 18 | 534 | June-Reg | Nick Touchstone | | P | 20 | 11/19/1981 | 6-5 | 220 | L | L | A+ | | Okaloosa-Walton College |
| 19 | 564 | June-Reg | Michael Perdomo | | OF | 21 | 6/29/1981 | 6-2 | 190 | R | R | Rookie | | Broward Community College |
| 20 | 594 | June-Reg | Ryan Broderick | | OF | 18 | 9/23/1983 | | | | | College | | Palm Desert High School (Palm Desert,CA) |
| 21 | 624 | June-Reg | Matt McCarthy | | P | 21 | 7/16/1980 | 6-1 | 190 | L | L | Rookie | | Yale University |
| 22 | 654 | June-Reg | Scott Hindman | | P | 21 | 3/6/1981 | 6-4 | 210 | L | L | A | | Princeton University |
| 23 | 684 | June-Reg | Andrew Slorp | | p | | | | | | | College | | Bellarmine Prep High School (San Jose,CA) |
| 24 | 714 | June-Reg | Brett Martinez | | C | 18 | 10/14/1983 | 6-0 | 174 | R | R | AAA | | Redlands East Valley High School (Redlands,CA) |
| 25 | 744 | June-Reg | Michel Simard | | P | 20 | 9/4/1981 | 6-3 | 200 | R | R | AA | | St. Petersburg College |
| 26 | 774 | June-Reg | Alex Dvorsky | | C | 22 | 8/8/1979 | 6-2 | 195 | R | R | A | | University of Northern Iowa |
| 27 | 804 | June-Reg | Bryan Williams | | P | 22 | 1/26/1980 | 6-0 | 175 | R | R | A+ | | Jacksonville University |
| 28 | 834 | June-Reg | Jake Mathis | | 3B-1B | 22 | 1/24/1980 | 6-3 | 200 | L | R | A+ | | University of Alabama-Huntsville |
| 29 | 864** | June-Reg | Ryan Rote | | P | 19 | 8/8/1982 | 6-4 | 225 | R | R | A+ | | Kishwaukee Community College |
| 30 | 894 | June-Reg | Jeff Marquez | | P | 20 | 11/5/1981 | 6-0 | 200 | L | R | A+ | | Broward Community College |
| 31 | 924 | June-Reg | Ross Lewis | | P-RF | 18 | 8/17/1983 | 6-8 | 201 | R | R | - | | Central Florida Community College |
| 32 | 954** | June-Reg | Chris Hunter | | P | 21 | 12/12/1980 | 6-4 | 200 | R | R | AAA | | Utah Valley State College |
| 33 | 984 | June-Reg | Chris Roque | | P | 19 | 10/13/1982 | 6-3 | 180 | R | R | Ind | | Broward Community College |
| 34 | 1014 | June-Reg | Jeremy King | | P | | | | 0 | | | - | | Itawamba Community College |
| 35 | 1044 | June-Reg | Jason Sugden | | OF | 20 | 10/11/1981 | 6-3 | 180 | B | R | AA | | |
| 36 | 1074 | June-Reg | Matt Byrd | | C | | | | 0 | | | - | | James Hunt High School (Wilson,NC) |
| 37 | 1104 | June-Reg | Trevor Wheedon | | C | | | | 0 | | | - | | Nordhoff High School (Ojai,CA) |
| 38 | 1134** | June-Reg | Buck Shaw | | P | 18 | 11/18/1983 | 6-4 | 210 | L | R | Rookie | | Wagoner High School (Wagoner,OK) |
| 39 | 1164 | June-Reg | Taylor Mcintyre | | P | | | | 0 | | | - | | Edmond Santa Fe High School (Edmond,OK) |
| 40 | 1194 | June-Reg | Adam Rodgers | | C | | | | 0 | | | - | | Grayson County Junior College |
| 41 | 1224 | June-Reg | Mike Cox | | P | 23 | 11/3/1978 | 5-11 | 195 | L | L | A+ | | Lamar Community College |
| 42 | 1254 | June-Reg | Brad Beaman | | LF | | | | 0 | | | - | | Northglenn High School (Northglenn,CO) |
| 43 | 1283** | June-Reg | Steven Delabar | | P | 18 | 7/17/1983 | 6-4 | 220 | R | R | A+ | | Volunteer State Community College |
| 44 | 1311 | June-Reg | Wayne Hedden | | P | 19 | 10/27/1982 | 6-2 | 200 | R | R | A | | Hillsborough Community College |
| 45 | 1338** | June-Reg | Shawn Mcgill | | | 18 | 2/29/1984 | 6-4 | 195 | R | R | A- | | South Kingstown High School (Wakefield,RI) |
| 46 | 1365 | June-Reg | Brock Keffer | | P | | | | 0 | | | - | | Illinois Valley Community College |
| 47 | 1391 | June-Reg | Karl Gelinas | | P | 18 | 8/6/1983 | 6-4 | 200 | R | R | AAA | | Edouard Montpetit High School (Montreal,QC) |
| 48 | 1417 | June-Reg | Bobby Wilson | | C | 19 | 4/8/1983 | 6-0 | 205 | R | R | MLB | 2008-2008 | St. Petersburg College |
| 49 | 1443 | June-Reg | Jason Corbett | | P | 18 | 1/8/1984 | 6-7 | 230 | R | R | Rookie | | Palm Harbor High School (Palm Harbor,FL) |
| 50 | 1467** | June-Reg | Cody Dickens | | P | 18 | 12/4/1983 | 6-2 | 200 | R | R | College | | Forbush High School (Yadkinville,NC) |
| |