| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 15 | June-Reg | Gabe Gross | $$ | OF | 21 | 10/21/1979 | 6-3 | 205 | L | R | MLB | 2004-2008 | Auburn University |
| 2 | 59 | June-Reg | Brandon League | $$ | P | 18 | 3/16/1983 | 6-2 | 180 | R | R | MLB | 2004-2008 | St. Louis High School (Honolulu,HI) |
| 3 | 91 | June-Reg | Tyrell Godwin | $$ | OF | 21 | 7/10/1979 | 6-0 | 200 | L | R | MLB | 2005-2005 | University of North Carolina |
| 4 | 121 | June-Reg | Chris Sheffield | | P | 21 | 12/13/1979 | 6-3 | 215 | R | R | A- | | University of Miami (Florida) |
| 5 | 151 | June-Reg | Mike Rouse | | IF | 21 | 4/25/1980 | 5-11 | 185 | L | R | MLB | 2006-2007 | California State University, Fullerton |
| 6 | 181 | June-Reg | Lee Delfino | | IF | 21 | 5/21/1980 | 6-0 | 185 | R | R | A+ | | East Carolina University |
| 7 | 211 | June-Reg | Jason Colson | | P | 22 | 11/16/1978 | 6-2 | 220 | L | R | A+ | | Winthrop University |
| 8 | 241 | June-Reg | Sean Grimes | | P | 18 | 5/31/1983 | 6-4 | 200 | R | L | Rookie | | Saunders Secondary High School (London,ON) |
| 9 | 271 | June-Reg | Luke Hetherington | | OF | 18 | 4/13/1983 | 6-1 | 190 | R | R | A+ | | Kentwood High School (Kent,WA) |
| 10 | 301 | June-Reg | Ryan Costello | | P | 21 | 7/13/1979 | 6-6 | 215 | R | L | AA | | Montclair State University |
| 11 | 331** | June-Reg | Sean Gamble | | OF | 18 | 6/23/1983 | 6-0 | 183 | L | L | A | | Davis High School (Montgomery,AL) |
| 12 | 361 | June-Reg | Ernie Durazo | | 1B | 22 | 12/6/1978 | 5-9 | 201 | L | R | A | | University of Arizona |
| 13 | 391 | June-Reg | Brendan Fuller | | P | 20 | 9/13/1980 | 6-1 | 205 | R | R | A | | University of South Florida |
| 14 | 421 | June-Reg | David Corrente | | C | 17 | 10/13/1983 | 6-3 | 190 | R | R | AAA | | Chatham-Kent High School (Chatham,ON) |
| 15 | 451 | June-Reg | Nick Thomas | | P | 18 | 2/2/1983 | 6-3 | 200 | L | R | A- | | Laguna Creek High School (Elk Grove,CA) |
| 16 | 481** | June-Reg | Rock Mills | | C | 20 | 7/11/1980 | 6-1 | 210 | R | R | A | | Pepperdine University |
| 17 | 511 | June-Reg | Chris Neylan | | P | 18 | 9/27/1982 | 6-6 | 190 | R | L | A- | | Steinert High School (Trenton,NJ) |
| 18 | 541 | June-Reg | Aaron McEachran | | C | 22 | 1/28/1979 | 6-0 | 200 | L | R | A+ | | University of Northern Iowa |
| 19 | 571 | June-Reg | Isaac Iorg | | IF | 22 | 6/7/1979 | 6-1 | 190 | R | R | AA | | Karns High School (Knoxville,TN) |
| 20 | 601 | June-Reg | Jon Ashford | | H | 18 | 8/20/1982 | 6-4 | 180 | L | R | Rookie | | Covington High School (Covington,TN) |
| 21 | 631** | June-Reg | Jeff Fiorentino | | | 18 | 4/14/1983 | 6-1 | 180 | L | R | MLB | 2005-2008 | Nova High School (Davie,FL) |
| 22 | 661 | June-Reg | Darren Heal | | | 21 | 9/5/1979 | 6-2 | 198 | B | R | Rookie | | Oklahoma State University |
| 23 | 691** | June-Reg | Garrick Evans | | IF | 18 | 12/2/1982 | 6-2 | 200 | R | R | College | | Lake Braddock High School (Burke,VA) |
| 24 | 721 | June-Reg | Dave Gassner | | P | 22 | 12/14/1978 | 6-2 | 190 | R | L | MLB | 2005-2005 | Purdue University |
| 25 | 751 | June-Reg | Mark Comolli | | P | 22 | 3/11/1979 | 6-0 | 190 | R | R | AAA | | Delaware Technical & Community College |
| 26 | 781 | June-Reg | Nick Tempesta | | SS | 22 | 11/20/1978 | 5-10 | 185 | R | R | A+ | | Eastern Connecticut State University |
| 27 | 811** | June-Reg | Adam Daniels | | P | 18 | 8/16/1982 | 6-2 | 190 | L | L | AA | | Eastern Oklahoma State Community College |
| 28 | 841** | June-Reg | Joel Kirsten | | P | 20 | 5/9/1981 | 6-1 | 180 | L | L | A+ | | Pierce (Wash) Junior College. |
| 29 | 871 | June-Reg | Mark McDonald | | P | | | | 0 | | | - | | MM Robinson High School (Burlington,ON) |
| 30 | 901 | June-Reg | Javier Lopez | | OF | 17 | 10/19/1983 | 6-2 | 185 | R | R | - | | Northwest Christian High School (Miami,FL) |
| 31 | 931** | June-Reg | Robert Grana | | C | 17 | 8/4/1983 | 6-3 | 200 | R | R | A | | Cimarron Memorial High School (Las Vegas,NV) |
| 32 | 961 | June-Reg | Adam Sanabria | | | | | | | | | College | | Lake Mary High School (Lake Mary,FL) |
| 33 | 991** | June-Reg | Kellen Ludwig | | P | 18 | 11/19/1982 | 6-4 | 230 | R | R | A- | | Lee County High School (Leesburg,GA) |
| 34 | 1021 | June-Reg | Robert Ennis | | P | 18 | 12/11/1982 | 6-4 | 200 | R | R | - | | Harding University |
| 35 | 1051 | June-Reg | Nicholas Gor | | P | 19 | 10/10/1981 | 6-7 | 230 | R | R | A+ | | Saddleback College |
| 36 | 1081 | June-Reg | Brian McFadden | | OF | | | | 0 | | | - | | Lake City High School (Lake City,SC) |
| 37 | 1111 | June-Reg | Felix Peguero | | OF | 18 | 7/1/1982 | 6-1 | 190 | L | R | Rookie | | Bladensburg High School (Riverdale,MD) |
| 38 | 1141 | June-Reg | Tim Whittaker | | C | 22 | 1/4/1979 | 6-0 | 205 | R | R | AAA | | University of South Carolina |
| 39 | 1171** | June-Reg | Adam Rodgers | | C | | | | 0 | | | - | | Grapevine High School (Grapevine,TX) |
| 40 | 1201 | June-Reg | Alex Castellvi | | | 17 | 7/8/1983 | 6-1 | 185 | R | R | College | | Plant High School (Tampa,FL) |
| 41 | 1230 | June-Reg | Ryan Olivo | | | | | | | | | College | | Grapevine High School (Grapevine,TX) |
| 42 | 1258** | June-Reg | Jared Sanders | | | 19 | 11/19/1981 | 6-2 | 210 | R | R | A | | Mount Hood Community College |
| 43 | 1286 | June-Reg | Paul McDonald | | P | | | | 0 | | | - | | MM Robinson High School (Burlington,ON) |
| 44 | 1314 | June-Reg | Kevin Johnston | | P | | | | 0 | | | - | | Matheson Secondary High School (Surrey,BC) |
| 45 | 1342 | June-Reg | Lawrence Best-Berfet | | 2B | 19 | 9/18/1981 | 6-1 | 185 | R | R | - | | County College of Morris |
| 46 | 1370** | June-Reg | Sean Barker | | OF | 21 | 5/26/1980 | 6-3 | 220 | R | R | MLB | 2007-2007 | Louisiana State University |
| 47 | 1397 | June-Reg | Chris Jones | | | 35 | 12/16/1965 | 6-2 | 210 | R | R | MLB | 1991-2000 | Heritage High School (Colleyville,TX) |
| 48 | 1424 | June-Reg | Scott Shoemaker | | | 19 | 9/21/1981 | 6-4 | 215 | R | R | AAA | | Grossmont College |
| 49 | 1449** | June-Reg | Kenneth Holmberg | | 2B | 18 | 2/21/1983 | 5-9 | 175 | R | R | A+ | | |
| 50 | 1472 | June-Reg | Floyd Albert | | P | 17 | 12/16/1983 | 6-2 | 200 | B | L | - | | Kernahan Park High School (St. Catharines,ON) |
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