| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 18 | June-Reg | Aaron Heilman | $$ | P | 22 | 11/12/1978 | 6-5 | 220 | R | R | MLB | 2003-2008 | University of Notre Dame |
| 1 | 38 | June-Reg | David Wright | $$ | 3B | 18 | 12/20/1982 | 6-0 | 195 | R | R | MLB | 2004-2008 | Hickory High School (Chesapeake,VA) |
| 2 | 70 | June-Reg | Alhaji Turay | $$ | OF | 18 | 9/22/1982 | 6-0 | 200 | R | R | AA | | Auburn High School (Auburn,WA) |
| 2 | 76 | June-Reg | Corey Ragsdale | $$ | SS | 18 | 11/10/1982 | 6-4 | 170 | R | R | AAA | | Nettleton High School (Jonesboro,AR) |
| 3 | 102 | June-Reg | Lenny DiNardo | | P | 21 | 9/9/1979 | 6-4 | 190 | L | L | MLB | 2004-2008 | Stetson University |
| 4 | 132 | June-Reg | Brian Walker | | P | 21 | 2/20/1980 | 6-3 | 210 | L | L | A+ | | University of Miami (Florida) |
| 5 | 162 | June-Reg | Danny Garcia | | IF | 21 | 4/12/1980 | 6-0 | 180 | R | R | MLB | 2003-2004 | Pepperdine University |
| 6 | 192 | June-Reg | Jason Weintraub | | P | 18 | 8/13/1982 | 6-3 | 160 | R | R | A | | Jefferson High School (Tampa,FL) |
| 7 | 222 | June-Reg | Tyler Beuerlein | | 1B-C | 22 | 5/29/1979 | 6-2 | 200 | B | R | A | | Grand Canyon University |
| 8 | 252 | June-Reg | Brett Kay | | C | 21 | 10/31/1979 | 6-1 | 190 | R | R | A+ | | California State University, Fullerton |
| 9 | 282 | June-Reg | Jayson Weir | | P | 18 | 4/3/1983 | 5-10 | 180 | L | L | A- | | Boone High School (Orlando,FL) |
| 10 | 312 | June-Reg | Ryan Olson | | P | 21 | 1/16/1980 | 6-5 | 190 | B | L | AAA | | UNLV |
| 11 | 342 | June-Reg | David Mattox | | P | 21 | 5/24/1980 | 6-2 | 180 | R | R | AA | | Anderson College (South Carolina) |
| 12 | 372 | June-Reg | Derran Watts | | OF | 21 | 6/28/1980 | 6-2 | 180 | R | R | AA | | University of Lethbridge |
| 13 | 402 | June-Reg | Jay Caligiuri | | 1B | 21 | 3/29/1980 | 6-0 | 190 | R | R | AAA | | Cal State Los Angeles |
| 14 | 432 | June-Reg | Kyle Larsen | | 1B | 18 | 6/30/1983 | 6-5 | 240 | L | L | A | | Eastlake High School (Sammamish,WA) |
| 15 | 462 | June-Reg | Jason Scobie | | P | 22 | 9/1/1978 | 6-1 | 190 | R | R | AAA | | Louisiana State University |
| 16 | 492 | June-Reg | Joe Hietpas | | C | 22 | 5/1/1979 | 6-3 | 220 | R | R | MLB | 2004-2004 | Northwestern University |
| 17 | 522 | June-Reg | Frank Corr | | OF | 22 | 9/19/1978 | 5-9 | 200 | R | R | AA | | Stetson University |
| 18 | 552** | June-Reg | Justin Barnes | | C | 18 | 8/21/1982 | 6-3 | 205 | R | R | AA | | Merritt Island High School (Merritt Island,FL) |
| 19 | 582** | June-Reg | Joshua Alliston | | P | 21 | 2/29/1980 | 6-5 | 230 | R | R | AAA | | Long Beach State University |
| 20 | 612** | June-Reg | Trevor Hutchinson | | P | 21 | 10/8/1979 | 6-5 | 220 | R | R | AA | | University of California |
| 21 | 642 | June-Reg | Blake McGinley | | P | 22 | 8/2/1978 | 6-1 | 185 | R | L | AAA | | Texas Tech University |
| 22 | 672 | June-Reg | David Bacani | | SS | 21 | 7/3/1979 | 5-7 | 170 | R | R | AAA | | Long Beach State University |
| 23 | 702 | June-Reg | John Toner | | OF | 21 | 9/22/1979 | 6-3 | 215 | R | R | A+ | | Western Michigan University |
| 24 | 732 | June-Reg | Josh Deel | | | 17 | 7/6/1983 | 6-5 | 185 | R | R | College | | Wolfson High School (Jacksonville,FL) |
| 25 | 762 | June-Reg | Nate Craft | | P | 18 | 12/22/1982 | 6-1 | 165 | L | L | - | | Palm Harbor High School (Palm Harbor,FL) |
| 26 | 792 | June-Reg | Justin Sassanella | | CF-LF | 18 | 6/6/1983 | 6-3 | 190 | L | R | Rookie | | Dekalb High School (Waterloo,IN) |
| 27 | 822 | June-Reg | Eric Templet | | P | 22 | 4/2/1979 | 6-2 | 201 | R | R | A | | University of Louisiana-Lafayette |
| 28 | 852 | June-Reg | Rylie Ogle | | P | 23 | 12/19/1977 | 6-4 | 180 | L | L | A | | University of California-Santa Barbara |
| 29 | 882 | June-Reg | Anthony Acosta | | P | 20 | 10/5/1980 | 6-1 | 180 | R | R | AAA | | Palm Beach Community College |
| 30 | 912 | June-Reg | Chris Sherman | | P | 21 | 7/2/1979 | 6-2 | 190 | R | R | A | | San Jose State University |
| 31 | 942 | June-Reg | Newton Hausmann | | P | | | | 0 | | | - | | Seton Hall University |
| 32 | 972** | June-Reg | Cole Armstrong | | C | 17 | 8/24/1983 | 6-3 | 210 | L | R | AA | | Delphi Academy High School (Langley,BC) |
| 33 | 1002 | June-Reg | Taylor George | | P | 18 | 8/14/1982 | 6-2 | 190 | R | R | A- | | Cypress College |
| 34 | 1032 | June-Reg | Sean Pittman | | SS-2B | 23 | 4/24/1978 | 5-10 | 180 | B | R | A+ | | North Georgia College & State University |
| 35 | 1062** | June-Reg | Wayne Foltin | | P | 18 | 12/11/1982 | 6-2 | 200 | R | R | A+ | | Centennial High School (Bakersfield,CA) |
| 36 | 1092 | June-Reg | Phillip Tyson | | P | | | | 0 | | | - | | Katella High School (Anaheim,CA) |
| 37 | 1122 | June-Reg | Jose Torres | | P | 20 | 2/9/1981 | 6-6 | 230 | R | R | Rookie | | Centennial High School (Corona,CA) |
| 38 | 1152 | June-Reg | Luis Roberts | | P | | | | 0 | | | - | | Dartmouth High School (Dartmouth,NS) |
| 39 | 1182 | June-Reg | Michael Almand | | P | 17 | 8/4/1983 | 6-5 | 195 | L | L | Ind | | Stockbridge High School (Stockbridge,GA) |
| 40 | 1211** | June-Reg | Jay Sawatski | | | 19 | 5/7/1982 | 6-2 | 195 | L | L | AAA | | Westark Community College |
| 41 | 1240 | June-Reg | Sean Farrell | | P | 19 | 10/24/1981 | 6-4 | 220 | L | L | Rookie | | Briarcliffe College |
| 42 | 1268 | June-Reg | Chris Davis | | | 19 | 9/29/1981 | 6-4 | 180 | R | R | Ind | | Freed-Hardeman University (Tenn.) |
| 43 | 1296 | June-Reg | Michael Schaeffer | | | | | | | | | College | | Wilson High School (Sinking Springs,PA) |
| 44 | 1324** | June-Reg | Randy Wells | | C | 18 | 8/28/1982 | 6-4 | 200 | R | R | MLB | 2008-2008 | Southwestern Illinois College |
| 45 | 1352** | June-Reg | Edward Cannon | | P | 19 | 11/13/1981 | 6-1 | 175 | R | R | College | | South Florida Community College |
| 46 | 1380 | June-Reg | Karnie Vertz | | | | | | | | | College | | Porterville (Calif.) Junior College |
| 47 | 1407 | June-Reg | Michael Hawkins | | CF | | | | 0 | | | - | | Eisenhower High School (Rialto,CA) |
| 48 | 1433 | June-Reg | Jamar Hill | | OF | 18 | 9/20/1982 | 6-3 | 200 | R | R | AA | | Santa Ana College |
| 49 | 1458 | June-Reg | Paul Labiche | | | 18 | 7/26/1982 | 6-4 | 215 | R | R | College | | Reserve Christian High School (Reserve,LA) |
| 50 | 1481** | June-Reg | Dewayne Carver | | P | 18 | 9/11/1982 | 6-4 | 200 | R | R | College | | Santa Fe Community College |
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