| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 2 | 68 | June-Reg | Brian Pilkington | $$ | P | 18 | 9/17/1982 | 6-5 | 210 | R | R | AA | | Santiago High School (Garden Grove,CA) |
| 3 | 100 | June-Reg | David Taylor | $$ | P | | | | 0 | | | Rookie | | Southlake High School (Clermont,FL) |
| 4 | 130 | June-Reg | Kole Strayhorn | | P | 18 | 10/1/1982 | 6-1 | 185 | R | R | AA | | Shawnee High School (Shawnee,OK) |
| 5 | 160 | June-Reg | Steve Nelson | | P | 18 | 11/10/1982 | 6-3 | 200 | L | R | A+ | | Cole Harbour District High School (Dartmouth,NS) |
| 6 | 190 | June-Reg | Edwin Jackson | | P | 17 | 9/9/1983 | 6-3 | 190 | R | R | MLB | 2003-2008 | Shaw High School (Columbus,GA) |
| 7 | 220 | June-Reg | David Cuen | | P | 17 | 8/4/1983 | 6-4 | 180 | L | L | A | | Cibola High School (Yuma,AZ) |
| 8 | 250 | June-Reg | Dave Cardona | | OF | 18 | 11/7/1982 | 6-0 | 170 | R | R | A+ | | San Jose (PR) |
| 9 | 280 | June-Reg | Sean Pierce | | OF | 22 | 11/26/1978 | 5-9 | 190 | R | R | A+ | | San Diego State University |
| 10 | 310 | June-Reg | Thom Ott | | P | 21 | 3/28/1980 | 6-3 | 195 | R | R | A | | University of Nebraska |
| 11 | 340 | June-Reg | Luis Gonzalez | | P | 18 | 2/27/1983 | 6-0 | 190 | L | L | AAA | | Florida Air Academy High School (Melbourne,FL) |
| 12 | 370 | June-Reg | Cedric Benson | | OF | 18 | 12/28/1982 | 6-0 | 200 | R | R | Rookie | | exists High School (-) |
| 13 | 400 | June-Reg | Matt Kauffman | | P | 22 | 10/8/1978 | 6-3 | 190 | L | L | Rookie | | San Jose State University |
| 14 | 430 | June-Reg | Ryan Carter | | OF | 18 | 1/4/1983 | 6-2 | 170 | R | R | A+ | | Riverdale High School (Fort Myers,FL) |
| 15 | 460 | June-Reg | James Stewart | | OF-2B | 19 | 5/9/1982 | 6-3 | 170 | R | R | A+ | | Sabino High School (Tucson,AZ) |
| 16 | 490 | June-Reg | Josh Canales | | IF | 22 | 1/15/1979 | 5-11 | 175 | R | R | AAA | | UCLA |
| 17 | 520 | June-Reg | Jerry Johnson | | P | 57 | 12/3/1943 | 6-3 | 200 | R | R | MLB | 1968-1977 | University of Arkansas |
| 18 | 550 | June-Reg | Vance McCracken | | P | 22 | 4/16/1979 | 6-7 | 220 | R | R | A+ | | West Virginia University |
| 19 | 580** | June-Reg | John Urick | | 1B | 19 | 2/22/1982 | 6-3 | 215 | L | L | AAA | | Cowley County Community College |
| 20 | 610 | June-Reg | William Malone | | 2B | 23 | 5/8/1978 | 5-10 | 185 | R | R | Ind | | Robert Morris College (Ill.) |
| 21 | 640 | June-Reg | Jereme Milons | | OF | 18 | 2/5/1983 | 6-2 | 200 | R | R | A+ | | Starkville High School (Starkville,MS) |
| 22 | 670 | June-Reg | Scott Gillitzer | | IF | 22 | 6/11/1979 | 6-1 | 180 | R | R | A+ | | University of Wisconsin |
| 23 | 700 | June-Reg | James Dykes | | P | 17 | 11/13/1983 | 6-4 | 195 | L | L | - | | Parklane High School (McComb,MS) |
| 24 | 730** | June-Reg | Ryan Lennerton | | P | | | | 0 | | | College | | Brookswood Secondary High School (Langley,BC) |
| 25 | 760** | June-Reg | Garrett Murdy | | P | 18 | 3/15/1983 | 6-4 | 215 | R | R | A | | Mission Viejo High School (Mission Viejo,CA) |
| 26 | 790 | June-Reg | Jay Sadlowe | | | | | | | | | College | | Farragut High School (Knoxville,TN) |
| 27 | 820 | June-Reg | Christopher Hutcheson | | P | | | | 0 | | | - | | Florala High School (Lockhart,AL) |
| 28 | 850** | June-Reg | Kyle Crist | | P | 18 | 6/27/1983 | 6-3 | 175 | R | R | AA | | Granite Bay High School (Granite Bay,CA) |
| 29 | 880** | June-Reg | Dennis Bigley | | | 17 | 8/18/1983 | 6-3 | 190 | R | R | A- | | Dallas Christian High School (Mesquite,TX) |
| 30 | 910 | June-Reg | Tom Wilson | | P | | | | 0 | | | - | | |
| 31 | 940** | June-Reg | David Parker | | P | 18 | 4/18/1983 | 6-4 | 180 | R | R | Ind | | Sisler High School (Winnipeg,MB) |
| 32 | 970** | June-Reg | Michael Hollimon | | SS | 19 | 6/14/1982 | 6-1 | 185 | B | R | MLB | 2008-2008 | Jesuit College Prep High School (Dallas,TX) |
| 33 | 1000 | June-Reg | Jason Stefani | | P | 22 | 4/11/1979 | 6-1 | 190 | L | L | A+ | | Albertson College |
| 34 | 1030 | June-Reg | Brian Devereaux | | P | 18 | 3/14/1983 | 6-4 | 182 | R | R | - | | Hollywood Christian High School (Fort Lauderdale,FL) |
| 35 | 1060 | June-Reg | Christopher Casey | | P | 18 | 3/2/1983 | 6-3 | 170 | L | L | - | | Huntsville High School (Huntsville,TX) |
| 36 | 1090** | June-Reg | Brian Cleveland | | SS | 19 | 1/7/1982 | 6-1 | 182 | R | R | AAA | | San Jose City College |
| 37 | 1120 | June-Reg | Dustin Schroer | | | | | | | | | College | | University of Kansas |
| 38 | 1150 | June-Reg | Ryan Hamilton | | | 18 | 8/5/1982 | 6-2 | 210 | R | R | Ind | | Klein High School (Klein,TX) |
| 39 | 1180** | June-Reg | Michael Johnson | | 1B | 21 | 6/25/1980 | 6-3 | 215 | L | R | AAA | | North Springs High School (Atlanta,GA) |
| 40 | 1210 | June-Reg | Cameron Feightner | | P | 18 | 8/20/1982 | 6-3 | 185 | R | R | College | | Beaverton High School (Beaverton,OR) |
| 41 | 1239 | June-Reg | Jim Gregory | | P | 17 | 8/9/1983 | 6-0 | 185 | L | L | - | | Crockett High School (Crockett,TX) |
| 42 | 1267 | June-Reg | Jordan Kissock | | P | 18 | 10/26/1982 | 6-3 | 170 | L | R | - | | Delphi Academy High School (Langley,BC) |
| 43 | 1295** | June-Reg | Clint Sammons | | | 18 | 5/15/1983 | 6-1 | 200 | R | R | MLB | 2007-2007 | Parkview High School (Liburn,GA) |
| 44 | 1323 | June-Reg | Clay Wehner | | | | | | | | | College | | Thomasville High School (Thomasville,GA) |
| 45 | 1351 | June-Reg | Mike Rodriguez | | P | 18 | 8/31/1982 | 6-1 | 180 | R | R | A+ | | Sierra College |
| 46 | 1379 | June-Reg | Michael Lynch | | C | 18 | 10/31/1982 | 6-3 | 220 | R | R | Ind | | South Suburban College |
| 47 | 1406 | June-Reg | Devin Monds | | | | | | | | | College | | Nepean High School (Nepean,ON) |
| 48 | 1432 | June-Reg | Daniel Desclouds | | P | 19 | 1/13/1982 | 6-1 | 170 | R | R | Ind | | Connors State College |
| 49 | 1457 | June-Reg | Jason Schuler | | C | | | | 0 | | | - | | College of Lake County |
| 50 | 1480 | June-Reg | Brooks Bollinger | | 3B | 21 | 11/15/1979 | 6-2 | 205 | R | R | - | | University of Wisconsin |
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