| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 26 | June-Reg | Corey Smith | $$ | IF | 18 | 4/15/1982 | 6-1 | 205 | R | R | AAA | | Piscataway High School (Piscataway,NJ) |
| 1 | 37 | June-Reg | Derek Thompson | $$ | P | 19 | 1/8/1981 | 6-2 | 180 | L | L | MLB | 2005-2005 | Land O'Lakes High School (Land O'Lakes,FL) |
| 2 | 55 | June-Reg | Brian Tallet | | P | 22 | 9/21/1977 | 6-7 | 210 | L | L | MLB | 2002-2008 | Louisiana State University |
| 2 | 66 | June-Reg | Mark Folsom | | RF | 19 | 6/7/1981 | 6-5 | 215 | R | R | A | | West Orange High School (Winter Garden,FL) |
| 3 | 96 | June-Reg | Sean Swedlow | | 1B | 18 | 5/25/1982 | 6-3 | 220 | L | R | A | | San Dimas High School (San Dimas,CA) |
| 4 | 126 | June-Reg | Adam Cox | | P | 20 | 6/27/1980 | 6-4 | 165 | L | L | A+ | | Darton College |
| 5 | 156 | June-Reg | Rashad Eldridge | | OF | 18 | 10/16/1981 | 6-1 | 185 | B | R | AAA | | First Presbyterian Day School High School (Macon,GA) |
| 6 | 186 | June-Reg | Kyle Evans | | P | 21 | 10/10/1978 | 6-3 | 190 | R | R | AAA | | Baylor University |
| 7 | 216 | June-Reg | Victor Kleine | | P | 20 | 9/12/1979 | 6-4 | 185 | L | L | AAA | | John A. Logan College |
| 8 | 246 | June-Reg | Joe Inglett | | IF | 22 | 6/29/1978 | 5-10 | 175 | L | R | MLB | 2006-2008 | University of Nevada |
| 9 | 276 | June-Reg | Gary Tolbert | | P | | | | 0 | | | - | | Madison County High School (Danielsville,GA) |
| 10 | 306 | June-Reg | Tom Canale | | P | 20 | 7/21/1979 | 6-3 | 185 | R | R | A | | California Lutheran University |
| 11 | 336 | June-Reg | Scott Threinen | | 3B | 18 | 8/23/1981 | 6-0 | 190 | R | R | A- | | Kasson-Mantorville High School (Mantorville,MN) |
| 12 | 366** | June-Reg | Jason Colson | | P | 21 | 11/16/1978 | 6-2 | 220 | L | R | A+ | | Winthrop University |
| 13 | 396 | June-Reg | Jeff Haase | | C | 22 | 5/15/1978 | 6-2 | 205 | R | R | A+ | | Cleveland State University |
| 14 | 426 | June-Reg | Ryan Church | | OF | 21 | 10/14/1978 | 6-1 | 190 | L | L | MLB | 2004-2008 | University of Nevada |
| 15 | 456 | June-Reg | Nate Janowicz | | OF | 22 | 5/16/1978 | 5-10 | 185 | L | L | A+ | | University of South Carolina |
| 16 | 486 | June-Reg | Luke Field | | P | 21 | 1/27/1979 | 5-11 | 170 | R | R | AA | | Arizona State University |
| 17 | 516 | June-Reg | Brandon Matheny | | P | 21 | 10/22/1978 | 6-3 | 205 | L | L | AAA | | Emory and Henry College |
| 18 | 546** | June-Reg | Jeremy Rogelstad | | P | 21 | 11/29/1978 | 6-7 | 195 | R | R | A- | | San Jose State University |
| 20 | 606 | June-Reg | Ryan Larson | | P | 21 | 5/13/1979 | 5-10 | 190 | R | R | AAA | | Sacramento City College |
| 21 | 636 | June-Reg | Steven Fugarino | | P | 22 | 3/16/1978 | 6-0 | 200 | R | R | A- | | Iona College |
| 22 | 666 | June-Reg | Jim Pietro | | 3B | 22 | 10/11/1977 | 5-11 | 190 | R | R | A- | | Creighton University |
| 23 | 696** | June-Reg | Brandon Harmsen | | P | 18 | 12/13/1981 | 6-3 | 200 | R | R | A+ | | Jenison High School (Jenison,MI) |
| 24 | 726 | June-Reg | Christopher Houser | | 3B | | | | 0 | | | - | | University of Texas |
| 25 | 756 | June-Reg | Andy Helmer | | | | | | | | | College | | Purdue University |
| 26 | 786** | June-Reg | Rodney Choy Foo | | ss | 18 | 12/12/1981 | 6-1 | 180 | B | R | AA | | Kailua High School (Kailua,HI) |
| 27 | 816 | June-Reg | Johri Litman | | P | 20 | 9/19/1979 | 6-3 | 205 | R | R | A- | | Yavapai College |
| 28 | 846 | June-Reg | Jeff Opalewski | | | | | | | | | College | | Heritage High School (Saginaw,MI) |
| 29 | 876 | June-Reg | Jon Van Every | | OF | 20 | 11/27/1979 | 6-1 | 185 | L | L | MLB | 2008-2008 | Itawamba Community College |
| 30 | 906** | June-Reg | Brian Wilson | | P | 18 | 3/16/1982 | 6-1 | 205 | R | R | MLB | 2006-2008 | Londonderry High School (Londonderry,NH) |
| 31 | 936** | June-Reg | Conor Jackson | | 1B | 18 | 5/7/1982 | 6-3 | 210 | R | R | MLB | 2005-2008 | El Camino Real High School (Woodland Hills,CA) |
| 32 | 966** | June-Reg | Scott Thomas | | C | 15 | 3/21/1985 | 5-11 | 202 | L | R | A- | | Lake Michigan College |
| 33 | 996 | June-Reg | Ashley Dunlap | | | | | | | | | College | | Palomar College |
| 34 | 1026 | June-Reg | Steve Fitch | | P | 22 | 2/15/1978 | 6-1 | 180 | R | R | AA | | Kutztown University of Pennsylvania |
| 35 | 1056 | June-Reg | Willie Mckenzie | | | | | | | | | College | | Walters State Community College |
| 36 | 1086 | June-Reg | Jonathan Schultz | | P | | | | 0 | | | - | | East High School (Appleton,WI) |
| 37 | 1116 | June-Reg | Damon Katz | | 2B | 22 | 11/23/1977 | 5-11 | 180 | R | R | A+ | | Pepperdine University |
| 38 | 1146 | June-Reg | Robert Sierer | | P | | | | 0 | | | - | | Bluffton College |
| 39 | 1176** | June-Reg | Curtis Ledbetter | | | 18 | 12/26/1981 | 6-3 | 220 | R | R | A+ | | Lawrence High School (Lawrence,KS) |
| 40 | 1205 | June-Reg | Jon Hooker | | | 21 | 12/18/1978 | 6-4 | 220 | R | R | Ind | | University of Kentucky |
| 41 | 1234 | June-Reg | Eric Crozier | | IF | 21 | 8/17/1978 | 6-4 | 200 | L | L | MLB | 2004-2004 | Norfolk State University |
| 42 | 1263** | June-Reg | Silas Ah Sui | | 3b | | | | 0 | | | - | | College of The Siskiyous |
| 43 | 1291 | June-Reg | Ron Colvard | | | 22 | 11/27/1977 | 6-4 | 200 | R | R | A- | | The Citadel |
| 44 | 1318** | June-Reg | Joe Little | | P | 18 | 3/10/1982 | 6-1 | 175 | L | L | A+ | | Arvada High School (Arvada,CO) |
| 45 | 1344 | June-Reg | Mark Carroll | | | 18 | 10/14/1981 | 6-2 | 170 | R | R | A+ | | Arcadia High School (Arcadia,CA) |
| 46 | 1368 | June-Reg | Chris Appuhn | | | | | | | | | College | | Millard North High School (Omaha,NE) |
| |
