| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 22 | June-Reg | Phillip Dumatrait | $$ | P | 18 | 7/12/1981 | 6-2 | 170 | R | L | MLB | 2007-2008 | Bakersfield Junior College |
| 2 | 62 | June-Reg | Manny Delcarmen | | P | 18 | 2/16/1982 | 6-2 | 190 | R | R | MLB | 2005-2008 | West Roxbury High School (West Roxbury,MA) |
| 3 | 92 | June-Reg | Matt Cooper | | IF | 19 | 10/10/1980 | 6-3 | 200 | R | R | A+ | | Ripley High School (Stillwater,OK) |
| 4 | 122 | June-Reg | Brandon Mims | | P | 18 | 12/2/1981 | 6-2 | 180 | L | L | A- | | Prattville High School (Prattville,AL) |
| 5 | 152 | June-Reg | Brian Esposito | | C-1B | 21 | 2/24/1979 | 6-1 | 190 | R | R | MLB | 2007-2007 | University of Connecticut |
| 6 | 182 | June-Reg | Kenny Perez | | IF | 18 | 9/28/1981 | 6-2 | 195 | B | R | AAA | | South Miami High School (Miami,FL) |
| 7 | 212 | June-Reg | Tony Fontana | | P | 21 | 5/21/1979 | 6-3 | 175 | R | R | AA | | Bowling Green State University |
| 8 | 242 | June-Reg | Brian Adams | | P | 22 | 10/2/1977 | 6-3 | 195 | L | L | AA | | Liberty University |
| 9 | 272 | June-Reg | Patrick Johnson | | RF | 21 | 2/6/1979 | 6-1 | 225 | L | L | A- | | William Carey College (Miss.) |
| 10 | 302 | June-Reg | Eric Doble | | P | 21 | 11/3/1978 | 6-2 | 190 | R | R | A- | | Arizona State University |
| 11 | 332 | June-Reg | Freddy Sanchez | | 2B | 22 | 12/21/1977 | 5-11 | 185 | R | R | MLB | 2002-2008 | Oklahoma City University |
| 12 | 362 | June-Reg | Shane Hall | | P | 20 | 6/14/1980 | 6-5 | 225 | R | R | A | | E. Arizona Junior College |
| 13 | 392** | June-Reg | Miguel Quintana | | OF | 21 | 6/29/1979 | 6-1 | 195 | L | R | AA | | Florida International University |
| 14 | 422 | June-Reg | Ian Perio | | P | 22 | 5/11/1978 | 5-11 | 180 | L | L | A- | | University of San Francisco |
| 15 | 452 | June-Reg | Dustin Brisson | | DH | 22 | 3/18/1978 | 6-3 | 210 | L | R | AA | | University of Central Florida |
| 16 | 482 | June-Reg | Josh Thigpen | | P | 18 | 6/27/1982 | 6-4 | 195 | R | R | A | | Rogers High School (Killen,AL) |
| 17 | 512 | June-Reg | Chris Elmore | | P | 23 | 4/28/1977 | 6-1 | 195 | L | L | AAA | | University of North Carolina |
| 18 | 542** | June-Reg | Haas Pratt | | 3B | 18 | 9/17/1981 | 6-3 | 225 | R | R | AAA | | Rancho Bernardo High School (San Diego,CA) |
| 19 | 572 | June-Reg | Justin Sherrod | | OF | 22 | 1/11/1978 | 6-2 | 215 | R | R | AAA | | Rollins College |
| 20 | 602 | June-Reg | Brian Bentley | | P | 21 | 8/7/1978 | 6-3 | 203 | R | R | A- | | University of Louisville |
| 21 | 632 | June-Reg | James Carroll | | | 20 | 2/1/1980 | 6-0 | 185 | R | R | A+ | | Mississippi State University |
| 22 | 662 | June-Reg | Felix Villegas | | P | 21 | 8/8/1978 | 6-2 | 200 | R | R | AA | | Muscatine Community College |
| 23 | 692 | June-Reg | Raul Nieves | | IF | 21 | 1/4/1979 | 6-2 | 195 | B | R | AAA | | University of Mobile |
| 24 | 722 | June-Reg | Freddie Money | | OF | 21 | 1/11/1979 | 5-11 | 170 | R | R | A+ | | Wallace Community College |
| 25 | 752 | June-Reg | Jon Gutierrez | | | 20 | 3/14/1980 | 5-10 | 190 | L | L | Ind | | Central Arizona College |
| 26 | 782 | June-Reg | Marcellus Dawson | | | | | | | | | College | | Muscatine Community College |
| 27 | 812 | June-Reg | James Morrison | | | 19 | 2/12/1981 | 6-1 | 190 | R | R | A | | Beulah High School (Valley,AL) |
| 28 | 842** | June-Reg | Travis Kaats | | CF | 18 | 4/27/1982 | 6-1 | 205 | R | R | Rookie | | Desert Mountain High School (Scottsdale,AZ) |
| 29 | 872 | June-Reg | Kason Gabbard | | P | 18 | 4/8/1982 | 6-4 | 200 | L | L | MLB | 2006-2008 | Royal Palm Beach High School (West Palm Beach,FL) |
| 30 | 902 | June-Reg | Jeremy Terni | | SS | | | | 0 | R | R | Ind | | Montville High School (Uncasville,CT) |
| 31 | 932** | June-Reg | Tommie Major | | | 17 | 9/15/1982 | 6-0 | 190 | R | R | College | | New London High School (New London,CT) |
| 32 | 962 | June-Reg | Eric Rollins | | | | | | | | | College | | Latta High School (Ada,OK) |
| 33 | 992** | June-Reg | Bart Braun | | P | 18 | 2/8/1982 | 5-10 | 175 | L | L | Ind | | Vallejo High School (Vallejo,CA) |
| 34 | 1022 | June-Reg | John Carreon | | P | | | | 0 | | | - | | Arizona Western College |
| 35 | 1052 | June-Reg | Dusty Brown | | OF | 18 | 6/19/1982 | 6-0 | 180 | R | R | AAA | | Bradshaw Mountain High School (Prescott Valley,AZ) |
| 36 | 1082** | June-Reg | Mike Guerrero | | OF | 19 | 10/14/1980 | 6-3 | 210 | R | R | Ind | | South Mountain Community College |
| 37 | 1112 | June-Reg | Brett Bonvechio | | 1B | 17 | 11/13/1982 | 6-1 | 190 | L | R | AA | | Prospect High School (Saratoga,CA) |
| 38 | 1142 | June-Reg | Daniel Coffee | | RF | | | | 0 | | | - | | Saint Bernard's High School (Old Lyme,CT) |
| 39 | 1172 | June-Reg | Gabriel Roberti | | P | | | | 0 | | | - | | West Hills High School (Santee,CA) |
| 40 | 1201 | June-Reg | Brad Bettcher | | P | | | 6-2 | 200 | R | R | - | | Palo Verde High School (Tucson,AZ) |
| 41 | 1230 | June-Reg | Ferrari Miller | | CF | | | | 0 | | | - | | Castlemont High School (Oakland,CA) |
| 42 | 1259** | June-Reg | Javier Herrera | | C | 18 | 10/8/1981 | 6-2 | 190 | R | R | AAA | | Gulliver Prep High School (Coral Gables,FL) |
| 43 | 1287** | June-Reg | Chris Duffy | | OF | 20 | 4/20/1980 | 5-10 | 186 | B | L | MLB | 2005-2007 | South Mountain Community College |
| 44 | 1314** | June-Reg | Kevin Brown | | IF | 21 | 4/11/1979 | 6-4 | 230 | R | R | A+ | | University of Miami (Florida) |
| 45 | 1340 | June-Reg | Nathan Goodrichm | | P | | | | 0 | | | - | | Mercyhurst College |
| 46 | 1364** | June-Reg | Donald Benson | | OF | 19 | 9/22/1980 | 5-11 | 195 | R | R | A- | | Mt. San Jacinto (Calif.) Junior College |
| |