| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 4 | 116 | June-Reg | Sam Hays | | P | 18 | 10/7/1981 | 6-5 | 210 | L | L | A- | | Waco High School (Waco,TX) |
| 5 | 146 | June-Reg | Derrick Van Dusen | | P | 19 | 6/6/1981 | 6-3 | 185 | L | L | AA | | Riverside Community College |
| 6 | 176 | June-Reg | Jamal Strong | $$ | OF | 21 | 8/5/1978 | 5-10 | 180 | R | R | MLB | 2003-2005 | University of Nebraska |
| 7 | 206 | June-Reg | Jaime Bubela | | OF | 22 | 6/6/1978 | 6-1 | 200 | L | R | MLB | 2005-2005 | Baylor University |
| 8 | 236 | June-Reg | Rett Johnson | | P | 20 | 7/6/1979 | 6-2 | 211 | L | R | AAA | | Coastal Carolina University |
| 9 | 266** | June-Reg | Charlie Manning | | P | 21 | 3/31/1979 | 6-2 | 180 | L | L | MLB | 2008-2008 | University of Tampa |
| 10 | 296 | June-Reg | Ryan Ketchner | | P | 18 | 4/19/1982 | 6-1 | 190 | L | L | AAA | | John Leonard High School (Greenacres,FL) |
| 11 | 326 | June-Reg | Blake Bone | | 3B | 21 | 1/12/1979 | 6-1 | 190 | L | R | A+ | - | University of Alabama |
| 12 | 356 | June-Reg | Erick Swanson | | P | 21 | 10/30/1978 | 6-6 | 215 | L | L | A- | | Oakland University |
| 13 | 386 | June-Reg | Skip Wiley | | P | 18 | 10/19/1981 | 6-1 | 185 | R | R | A- | | Chaminade-Madonna High School (Hollywood,FL) |
| 14 | 416 | June-Reg | Manny Crespo | | C | 21 | 1/4/1979 | 5-10 | 185 | R | R | A+ | | University of Miami (Florida) |
| 15 | 446 | June-Reg | John Daubert | | 3B | | | | 0 | | | - | | Rutgers University |
| 16 | 476 | June-Reg | Jared Jones | | OF | 20 | 6/25/1980 | 6-5 | 245 | R | R | Rookie | | Florida State University |
| 17 | 506 | June-Reg | Steven Moore | | CF | | | | 0 | | | - | | Dominguez High School (Compton,CA) |
| 18 | 536 | June-Reg | Jonathan Douillard | | C | 18 | 1/24/1982 | 6-0 | 190 | L | R | A | | Harrison High School (Kennesaw,GA) |
| 19 | 566 | June-Reg | Tanner Watson | | P | 18 | 6/14/1982 | 6-3 | 195 | R | R | A+ | | Arnprior District High School (Arnprior,ON) |
| 20 | 596** | June-Reg | Miguel Martinez | | P | 17 | 10/22/1982 | 6-2 | 190 | L | L | A+ | | Maria Auxiliadora (Carolina,PR) |
| 21 | 626** | June-Reg | Robbie Van | | P | 18 | 11/3/1981 | 6-2 | 205 | L | L | A | | Silverado High School (Las Vegas,NV) |
| 22 | 656 | June-Reg | Larry Brown | | IF | | | | | | | Rookie | | College of the Canyons |
| 23 | 686** | June-Reg | Jason Hammel | | P | 17 | 9/2/1982 | 6-6 | 200 | R | R | MLB | 2006-2008 | South Kitsap High School (Port Orchard,WA) |
| 24 | 716 | June-Reg | William Corbin | | C | | | | 0 | | | - | | Jefferson High School (Jefferson,IN) |
| 25 | 746** | June-Reg | Kyle Pawelczyk | | P | 18 | 11/18/1981 | 6-5 | 180 | L | L | A | | Elkins High School (Elkins,WV) |
| 26 | 776** | June-Reg | Jose Cruz | | OF | 17 | 10/21/1982 | 6-1 | 180 | B | R | A- | | Florida Air Academy High School (Melbourne,FL) |
| 27 | 806 | June-Reg | Theo Heflin | | P | 19 | 5/28/1981 | 6-2 | 190 | L | L | A- | | Hutchinson Community College |
| 28 | 836 | June-Reg | Thomas Williams | | CF | 18 | 5/13/1982 | 6-1 | 215 | R | R | - | | McCallum High School (Austin,TX) |
| 29 | 866** | June-Reg | Brandon Espinosa | | P | 18 | 9/20/1981 | 6-6 | 200 | R | R | College | | Mater Dei High School (Santa Ana,CA) |
| 30 | 896 | June-Reg | Chip Ambres | | OF | 20 | 12/19/1979 | 6-0 | 175 | R | R | MLB | 2005-2007 | Ranger College |
| 31 | 926 | June-Reg | Jason Looper | | SS | | | | 0 | | | - | | Sentinel High School (Sentinel,OK) |
| 32 | 956 | June-Reg | Phil Cullen | | P | 20 | 12/2/1979 | 6-9 | 215 | R | R | A | | University of Utah |
| 33 | 986** | June-Reg | Ben Hudson | | C | 20 | 11/4/1979 | 6-4 | 210 | R | R | A+ | | Truett-McConnell College |
| 34 | 1016 | June-Reg | Chris Way | | P | | | | 0 | | | - | | Groves High School (Beverly Hills,MI) |
| 35 | 1046** | June-Reg | - | | P | | | | 0 | | | AA | | Ridgewood High School (New Port Richey,FL) |
| 36 | 1076 | June-Reg | Ben Williams | | SS | | | | 0 | | | - | | Callaway High School (Hogansville,GA) |
| 38 | 1136** | June-Reg | Colby Summer | | SS | | | | 0 | | | College | | Mountain View High School (Bend,OR) |
| 39 | 1166** | June-Reg | John Nelson | | IF | 21 | 3/3/1979 | 6-1 | 190 | R | R | MLB | 2006-2006 | University of Kansas |
| 40 | 1195** | June-Reg | Justin Ottman | | | 18 | 12/1/1981 | 6-5 | 205 | L | L | Ind | | North Rockland High School (Thiells,NY) |
| 41 | 1224 | June-Reg | Ryan Welborn | | | | | | | | | College | | Yukon High School (Yukon,OK) |
| 42 | 1253 | June-Reg | Ronnie Brown | | LF | | | | 0 | | | - | | Cartersville High School (Cartersville,GA) |
| 43 | 1281 | June-Reg | Craig Moreland | | CF | | | | 0 | | | - | | Trousdale County High School (Hartsville,TN) |
| 44 | 1308 | June-Reg | Dennis Cervenka | | P | 20 | 10/19/1979 | 6-5 | 210 | L | L | Rookie | | McLennan Community College |
| 45 | 1334 | June-Reg | Alejandro Cadena | | C | 20 | 3/13/1980 | 5-11 | 205 | R | R | A | | Galveston College |
| 46 | 1358 | June-Reg | Derrell Smith | | SS | | | | 0 | | | - | | Palm Beach Lakes High School (West Palm Beach,FL) |
| 47 | 1382 | June-Reg | Chris Collins | | C | 18 | 8/14/1981 | 5-11 | 195 | R | R | A+ | | South Mountain Community College |
| 48 | 1402** | June-Reg | Philip Perry | | | 19 | 8/7/1980 | 6-3 | 206 | R | R | College | | Lakewood High School (Lakewood,CA) |
| 49 | 1422 | June-Reg | Isaac Johnson | | LF | | | | 0 | | | - | | Willcox High School (Thatcher,AZ) |
| 50 | 1442 | June-Reg | Matt Armstrong | | C | | | | 0 | | | - | | Eustis High School (Eustis,FL) |
| |