| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 27 | June-Reg | Robert Stiehl | $$ | C | 19 | 12/9/1980 | 6-3 | 205 | R | R | AA | | El Camino College |
| 2 | 67 | June-Reg | Chad Qualls | | P | 21 | 8/17/1978 | 6-5 | 205 | R | R | MLB | 2004-2008 | University of Nevada |
| 3 | 97 | June-Reg | Anthony Pluta | | P | 17 | 10/28/1982 | 6-2 | 190 | R | R | A+ | | Las Vegas High School (Las Vegas,NV) |
| 4 | 127** | June-Reg | Eric Keefner | | 1B | 18 | 12/8/1981 | 6-3 | 220 | R | R | Ind | | De La Salle High School (Chicago,IL) |
| 5 | 157 | June-Reg | Jake Whitesides | | CF | 19 | 6/23/1981 | 5-11 | 190 | L | R | A | | Hickman High School (Columbia,MO) |
| 6 | 187 | June-Reg | Tommy Whiteman | | SS | 20 | 7/14/1979 | 6-3 | 175 | R | R | AAA | | University of Oklahoma |
| 7 | 217 | June-Reg | Joe Lydic | | IF | 21 | 2/20/1979 | 6-4 | 180 | R | R | A+ | | University of Pittsburgh |
| 8 | 247 | June-Reg | Cory Doyne | | P | 18 | 8/13/1981 | 6-2 | 185 | R | R | MLB | 2007-2007 | Land O'Lakes High School (Land O'Lakes,FL) |
| 9 | 277 | June-Reg | Eric Bruntlett | | IF | 22 | 3/29/1978 | 6-0 | 200 | R | R | MLB | 2003-2008 | Stanford University |
| 10 | 307 | June-Reg | Nathan Nelson | | 3B | 23 | 2/8/1977 | 6-1 | 200 | R | R | A | | University of Louisiana-Lafayette |
| 11 | 337** | June-Reg | Bob McCrory | | P | 18 | 5/3/1982 | 6-0 | 205 | R | R | MLB | 2008-2008 | Columbus High School (Columbus,MS) |
| 12 | 367** | June-Reg | Ryan Hamilton | | P | 17 | 8/5/1982 | 6-2 | 210 | R | R | Ind | | University of San Diego |
| 13 | 397 | June-Reg | Anthony Acevedo | | OF | 22 | 5/5/1978 | 6-5 | 200 | L | L | AA | | Fresno State University |
| 14 | 427 | June-Reg | Anthony Angel | | 2B | 21 | 7/2/1978 | 6-0 | 195 | R | R | A | | Loyola Marymount University |
| 15 | 457 | June-Reg | Todd Self | | OF | 21 | 11/9/1978 | 6-5 | 210 | L | R | MLB | 2005-2005 | University of Louisiana-Lafayette |
| 16 | 487 | June-Reg | Monte Mansfield | | P | 19 | 3/22/1981 | 6-4 | 215 | R | R | AA | | Riverside Community College |
| 17 | 517 | June-Reg | Ralph Hicks | | P | 22 | 8/3/1977 | 5-10 | 180 | B | L | A- | | Centenary College |
| 18 | 547 | June-Reg | Eric Lee | | RF | 22 | 2/14/1978 | 5-10 | 180 | R | R | A | | University of Houston |
| 19 | 577** | June-Reg | Michael Bourn | | OF | 17 | 12/27/1982 | 5-11 | 180 | L | R | MLB | 2006-2008 | Nimitz High School (Houston,TX) |
| 20 | 607 | June-Reg | Jory Coughenour | | P | 22 | 6/17/1978 | 6-1 | 200 | R | R | AA | | University of Pittsburgh |
| 21 | 637 | June-Reg | Steve Mortimer | | | 19 | 6/10/1981 | 6-3 | 215 | L | L | AA | | Yakima Valley Junior College |
| 22 | 667 | June-Reg | Jorge Ruiz | | 2B | | | | 0 | | | - | | Notre Dame High School (Caguas,PR) |
| 23 | 697 | June-Reg | Mark Hamilton | | P | 22 | 4/23/1978 | 6-2 | 210 | L | L | A+ | | Texas Christian University |
| 24 | 727 | June-Reg | Paul Lockhart | | OF | 22 | 4/12/1978 | 6-0 | 195 | B | L | A | | San Diego State University |
| 25 | 757 | June-Reg | Craig Petulla | | P | 21 | 9/21/1978 | 6-2 | 185 | R | R | Rookie | | Slippery Rock University of Pennsylvania |
| 26 | 787 | June-Reg | Jonathan Krysa | | P | 21 | 8/27/1978 | 6-1 | 185 | R | R | A | | Rockhurst University |
| 27 | 817 | June-Reg | Andy Hutchings | | | 18 | 8/15/1981 | 6-1 | 205 | R | R | Ind | | Alfred-Almond High School (Almond,NY) |
| 28 | 847 | June-Reg | Damon Yee | | P | 22 | 2/19/1978 | 6-2 | 190 | R | R | A- | | Vanderbilt University |
| 29 | 877 | June-Reg | Mike Johnson | | C | | | | 0 | | | - | | Bellevue High School (Bellevue,WA) |
| 30 | 907 | June-Reg | Mike Burns | | P | 21 | 7/14/1978 | 6-1 | 190 | R | R | MLB | 2005-2006 | Cal State Los Angeles |
| 31 | 937 | June-Reg | T.J. Soto | | IF | 22 | 8/31/1977 | 5-11 | 200 | R | R | AA | | Louisiana Tech University |
| 32 | 967 | June-Reg | Mickey Mckee | | C-1B | 22 | 1/21/1978 | 6-0 | 185 | R | R | A | | Tulane University |
| 33 | 997** | June-Reg | Weston Burnette | | P | 18 | 10/21/1981 | 6-4 | 190 | L | R | Rookie | | Charles D. Owen High School (Black Mountain,NC) |
| 34 | 1027 | June-Reg | Jesse Floyd | | | 19 | 1/2/1981 | 6-5 | 185 | R | R | AA | | San Jacinto College-North |
| 35 | 1057 | June-Reg | David Frame | | | | | | | | | College | | Blinn College |
| 36 | 1087 | June-Reg | Christerson Spencer | | P | | | | 0 | | | - | | San Jacinto College-North |
| 37 | 1117 | June-Reg | George Drusina | | P | | | | 0 | | | - | | El Paso CC (El Paso CC) |
| 38 | 1147 | June-Reg | Christopher Sawyers | | P-SS | | | | 0 | | | - | | |
| 39 | 1177 | June-Reg | Darryl Chever | | CF | | | | 0 | | | College | | Delaware Technical & Community College |
| 40 | 1206 | June-Reg | Deshain Beasley | | CF | | | | 0 | | | - | | Bellevue Community College (WA) |
| 41 | 1235 | June-Reg | Aaron Coiteux | | 2B | | | | 0 | | | - | | |
| 42 | 1264 | June-Reg | Jason Godkin | | | | | | | | | College | | Chabot College |
| 43 | 1292** | June-Reg | Jason Windsor | | P | 17 | 7/16/1982 | 6-2 | 220 | R | R | MLB | 2006-2006 | Leigh High School (San Jose,CA) |
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