| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 7** | June-Reg | Matt Harrington | | P | 18 | 2/1/1982 | 6-4 | 210 | R | R | Ind | | Palmdale High School (Palmdale,CA) |
| 2 | 47 | June-Reg | Jason Young | $$ | P | 20 | 9/28/1979 | 6-5 | 205 | R | R | MLB | 2003-2004 | Stanford University |
| 3 | 77 | June-Reg | Chris Buglovsky | | P | 20 | 11/22/1979 | 6-2 | 171 | L | R | AAA | | The College of New Jersey |
| 4 | 107 | June-Reg | Cory Vance | | P | 21 | 6/20/1979 | 6-1 | 195 | L | L | MLB | 2002-2003 | Georgia Tech |
| 5 | 137 | June-Reg | Garrett Atkins | | IF | 20 | 12/12/1979 | 6-3 | 210 | R | R | MLB | 2003-2008 | University of California-Irvine |
| 6 | 167 | June-Reg | Scott Dohmann | | P | 22 | 2/13/1978 | 6-1 | 181 | R | R | MLB | 2004-2008 | University of Louisiana-Lafayette |
| 7 | 197 | June-Reg | Edmund Muth | | OF | 22 | 12/1/1977 | 6-0 | 198 | L | L | A+ | | Stanford University |
| 8 | 227 | June-Reg | Dan Conway | | C | 20 | 10/13/1979 | 6-2 | 191 | R | R | AAA | | Wake Forest University |
| 9 | 257 | June-Reg | Nick Webb | | P | 20 | 7/8/1979 | 6-3 | 205 | L | L | A+ | | University of Louisiana-Lafayette |
| 10 | 287 | June-Reg | Clint Barmes | | IF | 21 | 3/6/1979 | 6-1 | 190 | R | R | MLB | 2003-2008 | Indiana State University |
| 11 | 317 | June-Reg | Brad Hawpe | | IF | 21 | 6/22/1979 | 6-3 | 210 | L | L | MLB | 2004-2008 | Louisiana State University |
| 12 | 347 | June-Reg | Sean Green | | P | 21 | 4/20/1979 | 6-6 | 230 | R | R | MLB | 2006-2008 | University of Louisville |
| 13 | 377 | June-Reg | William Vazquez | | P | 20 | 12/26/1979 | 6-0 | 140 | R | R | AAA | | Indian Hills Community College-Centerville |
| 14 | 407 | June-Reg | Bob Zimmermann | | P | 18 | 11/17/1981 | 6-1 | 190 | R | R | AA | | De Smet Jesuit High School (Creve Coeur,MO) |
| 15 | 437 | June-Reg | Justin Huisman | | P | 21 | 4/16/1979 | 6-1 | 196 | R | R | MLB | 2004-2004 | University of Mississippi |
| 16 | 467 | June-Reg | Jose Vasquez | | OF | 17 | 12/12/1982 | 6-3 | 220 | L | L | A | | Booker High School (Sarasota,FL) |
| 17 | 497 | June-Reg | Charles Merricks | | P | 21 | 12/6/1978 | 6-0 | 200 | L | L | A | | UCLA |
| 18 | 527 | June-Reg | Scott Berney | | P | 22 | 10/25/1977 | 6-3 | 200 | R | R | A | | Clemson University |
| 19 | 557 | June-Reg | Joe Abell | | P | 22 | 3/7/1978 | 6-2 | 187 | R | R | A | | University of New Mexico |
| 20 | 587 | June-Reg | Ross Pilkington | | SS | 18 | 7/21/1981 | 6-0 | 185 | R | R | Rookie | | Loveland High School (Loveland,CO) |
| 21 | 617 | June-Reg | Zach Parker | | P | 18 | 8/19/1981 | 6-2 | 205 | R | L | AAA | | San Jacinto College-North |
| 22 | 647 | June-Reg | Bryan Peck | | C | 22 | 8/9/1977 | 5-11 | 195 | R | R | A+ | - | Middle Tennessee State University |
| 23 | 677 | June-Reg | Josh Pride | | C | 22 | 9/16/1977 | 6-0 | 200 | R | R | A+ | | Middle Tennessee State University |
| 24 | 707 | June-Reg | Eric Storey | | 3B | 22 | 10/12/1977 | 6-0 | 175 | R | R | AA | | Butler University |
| 25 | 737 | June-Reg | Kevin Blocker | | SS | 21 | 8/8/1978 | 6-1 | 185 | R | R | A- | | Wofford College |
| 26 | 767 | June-Reg | Darin Davis | | 2B | | | | 0 | | | - | | Cypress College |
| 27 | 797** | June-Reg | Patrick Curran | | P | | | | 0 | | | Rookie | | Edmonds Community College |
| 28 | 827 | June-Reg | Steve Guthrie | | | | | | | | | College | | Palomar College |
| 29 | 857** | June-Reg | Marcus Townsend | | OF | 18 | 4/20/1982 | 6-4 | 210 | R | R | Rookie | | Waller High School (Waller,TX) |
| 30 | 887 | June-Reg | Mike Vick | | OF | | | | 0 | | | - | | Virginia Tech |
| 31 | 917** | June-Reg | Adam Heether | | 3B | 18 | 1/14/1982 | 6-0 | 200 | R | R | AAA | | Ripon Christian High School (Ripon,CA) |
| 32 | 947** | June-Reg | Chris Netwall | | C | 20 | 11/17/1979 | 6-1 | 200 | R | R | AA | | Penn State University |
| 33 | 977** | June-Reg | Nick McCurdy | | P | 20 | 1/24/1980 | 6-3 | 185 | R | R | AAA | | Jefferson Davis Community College |
| 34 | 1007 | June-Reg | Grant Mullen | | 1B | | | | 0 | | | - | | Gordon College |
| 35 | 1037 | June-Reg | Darren Clarke | | P | 19 | 3/19/1981 | 6-8 | 235 | R | R | MLB | 2007-2007 | South Florida Community College |
| 36 | 1067** | June-Reg | Michael Perdomo | | OF | 19 | 6/29/1981 | 6-2 | 190 | R | R | Rookie | | Goleman High School (Miami,FL) |
| 37 | 1097** | June-Reg | Jason Frome | | OF | 20 | 7/3/1979 | 6-0 | 190 | R | R | A+ | | Indiana State University |
| 38 | 1127 | June-Reg | Jentry Beckstead | | P | 20 | 6/9/1980 | 5-11 | 165 | R | R | AAA | | Salt Lake Community College |
| 39 | 1157 | June-Reg | Mike Davies | | P | 19 | 3/29/1981 | 6-3 | 190 | L | L | A+ | | Mount Hood Community College |
| 40 | 1187** | June-Reg | Josh Bryant | | P | 18 | 8/7/1981 | 6-1 | 175 | R | R | - | | South Cobb High School (Austell,GA) |
| 41 | 1216 | June-Reg | Sean Johnson | | P-SS | | | | 0 | | | - | | Clinton High School (Clinton,IA) |
| 42 | 1245 | June-Reg | Chad Liter | | | | | | | | | College | | Wabash Valley College |
| 43 | 1274 | June-Reg | Seth Mccauley | | C | 19 | 6/19/1981 | 6-3 | 210 | R | R | AAA | | Three Forks High School (Three Forks,MT) |
| 44 | 1302** | June-Reg | Matt Farnum | | P | 19 | 6/1/1981 | 6-2 | 195 | R | R | AA | | Dakota Ridge High School (Littleton,CO) |
| 45 | 1328 | June-Reg | Chad Reeves | | | | | | | | | College | | Pomona High School (Arvada,CO) |
| 46 | 1353 | June-Reg | Matthew Barker | | 2B | | | | 0 | | | - | | Niwot High School (Longmont,CO) |
| 47 | 1377 | June-Reg | Don Rogers | | | | | | | | | College | | De Smet Jesuit High School (Creve Coeur,MO) |
| 48 | 1398 | June-Reg | David Rose | | CF | | | | 0 | | | - | | El Cerrito High School (El Cerrito,CA) |
| 49 | 1418 | June-Reg | Jason Kramer | | | | | | | | | College | | Vernon College |
| 50 | 1438 | June-Reg | Daniel Bria | | P | | | | 0 | | | - | | Lassen Junior College |
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