| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 10 | June-Reg | Joe Torres | $$ | P | 17 | 9/3/1982 | 6-2 | 175 | L | L | AA | | Gateway High School (Kissimmee,FL) |
| 1 | 20 | June-Reg | Chris Bootcheck | $$ | P | 21 | 10/24/1978 | 6-5 | 205 | R | R | MLB | 2003-2008 | Auburn University |
| 2 | 50 | June-Reg | Jared Abruzzo | $$ | C | 18 | 11/15/1981 | 6-3 | 225 | B | R | AA | | El Capitan High School (Lakeside,CA) |
| 3 | 80 | June-Reg | Tommy Murphy | | P | 21 | 4/27/1979 | 6-0 | 180 | B | R | MLB | 2006-2007 | Florida Atlantic University |
| 4 | 110 | June-Reg | Charlie Thames | | P | 21 | 5/23/1979 | 6-1 | 190 | R | R | AA | | University of Texas |
| 5 | 140 | June-Reg | Bobby Jenks | | P | 19 | 3/14/1981 | 6-3 | 225 | R | R | MLB | 2005-2008 | Inglemoor High School (Spirit Lake,ID) |
| 6 | 170 | June-Reg | Brandon O'Neal | | P | 21 | 10/17/1978 | 6-1 | 195 | B | R | AA | | University of Kansas |
| 7 | 200** | June-Reg | Aaron Hill | | SS | 18 | 3/21/1982 | 5-11 | 195 | R | R | MLB | 2005-2008 | Redwood High School (Visalia,CA) |
| 8 | 230 | June-Reg | Adam Pace | | P | 20 | 9/20/1979 | 6-1 | 192 | L | L | A+ | | Dominican College (New York) |
| 9 | 260 | June-Reg | Jason Coulie | | OF | 22 | 4/13/1978 | 6-2 | 200 | R | R | A+ | | Bates College |
| 10 | 290 | June-Reg | Matt Hensley | | P | 21 | 8/18/1978 | 6-2 | 215 | R | R | MLB | 2004-2004 | Grossmont College |
| 11 | 320** | June-Reg | Garrett Patterson | | P | 18 | 5/11/1982 | 6-0 | 222 | L | L | A+ | | McAlester High School (McAlester,OK) |
| 12 | 350 | June-Reg | Scott Schneider | | P | 22 | 5/4/1978 | 6-4 | 210 | R | R | AAA | | Norfolk State University |
| 13 | 380 | June-Reg | Josh Gray | | 1B | 19 | 2/22/1981 | 6-3 | 210 | R | R | Ind | | Rock Creek High School (Durant,OK) |
| 14 | 410 | June-Reg | Kevin Jenkins | | OF | 18 | 4/6/1982 | 6-0 | 200 | L | L | A | | Northwestern High School (Miami,FL) |
| 15 | 440 | June-Reg | Geoffrey Smart | | P | | | | 0 | | | - | | Kalamalka Secondary High School (Vernon,BC) |
| 16 | 470 | June-Reg | John Raburn | | SS | 21 | 2/16/1979 | 6-1 | 165 | R | R | AAA | | University of South Florida |
| 17 | 500 | June-Reg | Mike Napoli | | C | 18 | 10/31/1981 | 6-1 | 205 | R | R | MLB | 2006-2008 | Flanagan High School (Pembroke Pines,FL) |
| 18 | 530 | June-Reg | Tony Socarras | | C-1B | 21 | 11/8/1978 | 6-0 | 200 | L | R | AAA | | University of Florida |
| 19 | 560 | June-Reg | Brandon Rogers | | C | 22 | 3/1/1978 | 6-0 | 200 | R | R | AA | | San Diego State University |
| 20 | 590 | June-Reg | Brett Cimorelli | | P | 18 | 2/22/1982 | 6-4 | 220 | R | R | A | | Zephyrhills High School (Zephyrhills,FL) |
| 21 | 620 | June-Reg | Rich Fischer | | P | 19 | 10/21/1980 | 6-3 | 180 | R | R | AA | | San Bernardino Valley College |
| 22 | 650 | June-Reg | Jeremy Ward | | P | 22 | 8/3/1977 | 6-4 | 215 | L | L | A- | | Florida Southern College |
| 23 | 680** | June-Reg | Brian Finch | | P | 18 | 9/27/1981 | 6-4 | 195 | R | R | AA | | Columbia High School (Brazoria,TX) |
| 24 | 710 | June-Reg | Ryan Withey | | OF | 22 | 7/4/1977 | 6-2 | 195 | R | R | A | | Florida Atlantic University |
| 25 | 740 | June-Reg | Ransel Melgarejo | | OF | 18 | 8/28/1981 | 6-0 | 180 | R | R | A+ | | Miami Senior High School (Miami,FL) |
| 26 | 770 | June-Reg | James Warner | | | 21 | 6/21/1979 | 6-3 | 198 | L | L | A | | University of Missouri |
| 27 | 800 | June-Reg | Zack Roper | | 1B | 22 | 9/26/1977 | 6-2 | 200 | R | R | A+ | - | Florida Atlantic University |
| 28 | 830 | June-Reg | Leonidas Calderon | | P | | | | 0 | | | - | | Miami Killian High School (Miami,FL) |
| 29 | 860 | June-Reg | Kevin Kay | | C | 22 | 4/24/1978 | 5-11 | 190 | L | R | A- | | University of North Florida |
| 30 | 890 | June-Reg | Larry Bowles | | P | 21 | 3/18/1979 | 5-11 | 195 | L | L | Rookie | | Virginia Tech |
| 31 | 920 | June-Reg | Jeff Stockton | | SS | 22 | 6/6/1978 | 6-1 | 185 | R | R | A | | University of North Florida |
| 32 | 950 | June-Reg | Clinton Hart | | P | | | | 0 | | | - | | Florida Junior College |
| 33 | 980 | June-Reg | Adam Belicic | | P | 21 | 11/17/1978 | 6-1 | 195 | R | L | A | | George Washington University |
| 34 | 1010** | June-Reg | James Langham | | RF | 17 | 9/3/1982 | 6-0 | 205 | R | R | Rookie | | Jones County High School (Gray,GA) |
| 35 | 1040 | June-Reg | Tymber Lee | | P | 22 | 9/8/1977 | 6-2 | 185 | R | R | A- | | Wichita State University |
| 36 | 1070 | June-Reg | Jonathan Chretien | | P | | | | 0 | | | - | | Lake Charles High School (Lake Charles,LA) |
| 37 | 1100 | June-Reg | Gilbert Landestoy | | | 23 | 3/31/1977 | 6-4 | 200 | R | R | A | | Florida International University |
| 38 | 1130 | June-Reg | Richard Brantley | | P | | | | 0 | | | - | | Apopka High School (Apopka,FL) |
| 39 | 1160** | June-Reg | Casey Mutter | | P | 18 | 2/23/1982 | 6-4 | 230 | R | R | A | | Rialto High School (Rialto,CA) |
| 40 | 1190** | June-Reg | David Marchbanks | | P | 18 | 2/3/1982 | 6-2 | 190 | L | L | AA | | Mauldin High School (Mauldin,SC) |
| 41 | 1219 | June-Reg | Kellen Dupree | | P | | | | 0 | | | - | | Baker County High School (MacClenny,FL) |
| 42 | 1248 | June-Reg | Adam Lesko | | | 18 | 12/22/1981 | 6-2 | 180 | L | R | Ind | | Cheyenne High School (North Las Vegas,NV) |
| 43 | 1277 | June-Reg | Jeff Balser | | P | 19 | 12/31/1980 | 6-1 | 210 | R | R | A+ | | Polk Community College |
| 44 | 1304 | June-Reg | Ronald Ennis | | P | | | | 0 | | | - | | Polk Community College |
| 45 | 1330 | June-Reg | Brian Nagore | | | | | | | | | College | | Okaloosa-Walton College |
| 46 | 1354 | June-Reg | Jose Bellazetin | | 3B | | | | 0 | | | - | | Miami Senior High School (Miami,FL) |
| 47 | 1378 | June-Reg | Daniel Stillman | | P | | | | 0 | | | - | | University of Central Florida |
| 48 | 1399 | June-Reg | Andrew Daly | | | | | | | | | College | | Indian River Community College |
| 49 | 1419 | June-Reg | Zack Matthews | | | | | | | | | College | | Howard College |
| 50 | 1439** | June-Reg | David Murphy | | OF | 18 | 10/18/1981 | 6-3 | 195 | L | L | MLB | 2006-2008 | Klein High School (Klein,TX) |
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