| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 17 | June-Reg | Rick Asadoorian | $$ | OF | 18 | 7/23/1980 | 6-2 | 185 | R | R | AAA | | Northbridge High School (Northbridge,MA) |
| 1 | 40 | June-Reg | Brad Baker | $$ | P | 18 | 11/6/1980 | 6-2 | 195 | R | R | AAA | | Pioneer Valley Regional High School (Northfield,MA) |
| 1 | 48 | June-Reg | Casey Fossum | $$ | P | 21 | 1/9/1978 | 6-1 | 160 | B | L | MLB | 2001-2008 | Texas A&M University |
| 2 | 76 | June-Reg | Matt Thompson | | P | 17 | 8/28/1981 | 6-1 | 205 | R | R | A+ | | Timberline High School (Boise,ID) |
| 3 | 88 | June-Reg | Rich Rundles | | P | 18 | 6/3/1981 | 6-5 | 180 | L | L | AAA | | Jefferson County High School (New Market,TN) |
| 3 | 109 | June-Reg | Antron Seiber | | OF | 19 | 5/19/1980 | 6-1 | 185 | R | R | A+ | | Independence High School (Independence,LA) |
| 4 | 139** | June-Reg | Rory Shortell | | P | 18 | 6/3/1981 | 6-3 | 205 | R | R | A+ | | Madison High School (Portland,OR) |
| 5 | 169 | June-Reg | Greg Montalbano | | P | 21 | 8/24/1977 | 6-2 | 190 | L | L | AA | | Northeastern University |
| 6 | 199 | June-Reg | Jon Henry Kail | | OF | 18 | 9/7/1980 | 6-1 | 199 | R | R | College | | Baldwin High School (Pittsburgh,PA) |
| 7 | 229** | June-Reg | Rich Carroll | | 1B | 19 | 12/24/1979 | 6-3 | 220 | R | R | Rookie | | Venice High School (Venice,FL) |
| 8 | 259 | June-Reg | Andy Heimbach | | P | 21 | 9/25/1977 | 6-2 | 185 | R | R | A | | Mount Vernon Nazarene University (Ohio) |
| 9 | 289 | June-Reg | Richard Thoms | | P | | | | 0 | | | - | | Mississippi State University |
| 10 | 319 | June-Reg | Brian Wiese | $$ | OF | 22 | 8/15/1976 | 5-11 | 200 | R | R | A+ | | Mississippi State University |
| 11 | 349 | June-Reg | Kregg Jarvais | | C | 22 | 12/25/1976 | 6-2 | 215 | R | R | A | | University of Maine-Orono |
| 12 | 379 | June-Reg | Lew Ford | | CF | 22 | 8/12/1976 | 6-0 | 190 | R | R | MLB | 2003-2007 | Dallas Baptist University |
| 13 | 409 | June-Reg | Michael Dwyer | | 1B | | | | 0 | | | A+ | | University of Richmond |
| 14 | 439 | June-Reg | B.J. Leach | | P | 21 | 8/3/1977 | 5-11 | 185 | R | R | AA | | Florida Southern College |
| 15 | 469 | June-Reg | Brian Wiley | | P | | | | | | | College | | The Citadel |
| 16 | 499** | June-Reg | Charlie Manning | | P | 20 | 3/31/1979 | 6-2 | 180 | L | L | MLB | 2008-2008 | Polk Community College |
| 17 | 529 | June-Reg | Trey Duncan | | 3B | 18 | 11/27/1980 | 6-0 | 220 | R | R | A | | Mississippi Gulf Coast Community College |
| 18 | 559 | June-Reg | Jeff Waldron | | C | 22 | 10/4/1976 | 6-1 | 205 | L | R | AAA | | Boston College |
| 19 | 589 | June-Reg | Jason Bottenfield | | P | 22 | 6/4/1977 | 6-2 | 210 | R | R | A- | | University of Texas-Pan American |
| 20 | 619 | June-Reg | Daniel Generelli | | P | 18 | 8/25/1980 | 6-2 | 200 | R | R | A | | Quinsigamond Community College |
| 21 | 649** | June-Reg | Jason Henderson | | P | | | | 0 | | | - | | Bishop Hendricken High School (Warwick,RI) |
| 22 | 679 | June-Reg | Ellis Debrow | | 1B | | | | 0 | | | - | | Woodham High School (Pensacola,FL) |
| 23 | 709 | June-Reg | Nicolas Puckett | | P | | | | 0 | | | - | | Timberline High School (Boise,ID) |
| 24 | 739** | June-Reg | Rex Rundgren | | IF | 18 | 11/20/1980 | 6-1 | 170 | R | R | AAA | | Mid Pacific Institute High School (Honolulu,HI) |
| 25 | 769 | June-Reg | Tim Mccabe | | | 18 | 9/5/1980 | 6-3 | 215 | R | R | Ind | | North Catholic High School (Pittsburgh,PA) |
| 26 | 799** | June-Reg | Marshall McDougall | | IF | 20 | 12/19/1978 | 6-1 | 200 | R | R | MLB | 2005-2005 | Florida State University |
| 27 | 829** | June-Reg | Mark Kiger | | IF | 19 | 5/30/1980 | 5-11 | 177 | R | R | AAA | | Grossmont College |
| 28 | 859 | June-Reg | Jon Anderson | | | 22 | 10/17/1976 | 5-9 | 150 | B | R | A+ | | University of Illinois |
| 29 | 889 | June-Reg | Barton Hollis | | P | | | | 0 | | | Ind | | Lawrence County High School (Moulton,AL) |
| 30 | 919 | June-Reg | Charlie Frasier | | | 19 | 12/8/1979 | 6-2 | 220 | L | R | Ind | | Santa Rosa Junior College |
| 31 | 949** | June-Reg | Jaime Bubela | | OF | 21 | 6/6/1978 | 6-1 | 200 | L | R | MLB | 2005-2005 | Baylor University |
| 32 | 979 | June-Reg | David Flournoy | | LF-RF | | | | 0 | | | - | | Deer Valley High School (Antioch,CA) |
| 33 | 1009 | June-Reg | Perry Miley | | CF | | | | 0 | | | A- | | William Carey College (Miss.) |
| 34 | 1039 | June-Reg | Dan Giese | | P | 22 | 5/19/1977 | 6-3 | 195 | R | R | MLB | 2007-2008 | University of San Diego |
| 35 | 1069 | June-Reg | Ben Marbury | | LF | | | | 0 | | | Rookie | - | |
| 36 | 1099 | June-Reg | John Brandon | | | | | | | | | College | | Panola College |
| 37 | 1129** | June-Reg | Chris Mabeus | | P | 20 | 2/11/1979 | 6-3 | 210 | R | R | MLB | 2006-2006 | Eastern Arizona College |
| 38 | 1159 | June-Reg | Jesse Cooksey | | P | | | | 0 | | | - | | Port-Neches Groves High School (Port Neches,TX) |
| 39 | 1189 | June-Reg | Matthew Ames | | 1B | | | | 0 | | | - | | Stanhope Elmore High School (Millbrook,AL) |
| 40 | 1219 | June-Reg | Anthony Bass | | LF | | | | 0 | | | - | | Booker T. Washington High School (Tulsa,OK) |
| 41 | 1248 | June-Reg | Justin Smetana | | | 19 | 3/1/1980 | 6-3 | 220 | L | L | Ind | | Cardinal High School (Middlefield,OH) |
| 42 | 1276 | June-Reg | Bryan Rinehart | | | | | | | | | College | | Southington High School (Southington,CT) |
| 43 | 1303** | June-Reg | Ryan Coffin | | P | 17 | 8/5/1981 | 6-4 | 180 | R | R | A+ | | Desert Vista High School (Phoenix,AZ) |
| 44 | 1330 | June-Reg | James Lindsey | | CF | | | | 0 | | | - | | Lee-Davis High School (Mechanicsville,VA) |
| 45 | 1355 | June-Reg | Brady Williams | | IF | 19 | 10/18/1979 | 6-1 | 180 | R | R | AA | | Pasco-Hernando Community College |
| 46 | 1379 | June-Reg | Joe Kerrigan | | P | 21 | 11/1/1977 | 5-10 | 180 | L | R | A+ | | Temple University |
| 47 | 1403 | June-Reg | James Burgess | | | 18 | 11/5/1980 | 6-3 | 202 | R | R | College | | Durango High School (Las Vegas,NV) |
| 48 | 1427 | June-Reg | Joseph Kjose | | P | 19 | 10/23/1979 | 6-3 | 235 | R | R | Ind | | Cochise College |
| 49 | 1450 | June-Reg | Jordan Remy | | 2B | | | | 0 | | | - | | Weston High School (Weston,MA) |
| 50 | 1471** | June-Reg | Brian Buscher | | 3B | 18 | 4/18/1981 | 6-0 | 185 | L | R | MLB | 2007-2008 | Terry Parker High School (Jacksonville,FL) |
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