| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 24 | June-Reg | Kurt Ainsworth | $$ | P | 20 | 9/9/1978 | 6-3 | 192 | R | R | MLB | 2001-2004 | Louisiana State University |
| 1 | 39 | June-Reg | Jerome Williams | $$ | P | 17 | 12/4/1981 | 6-3 | 180 | R | R | MLB | 2003-2007 | Waipahu High School (Waipahu, HI) |
| 2 | 62 | June-Reg | John Thomas | | P | 17 | 7/24/1981 | 6-2 | 190 | L | L | AAA | | Righetti High School (Santa Maria,CA) |
| 2 | 75 | June-Reg | Jack Taschner | | P | 21 | 4/21/1978 | 6-3 | 190 | L | L | MLB | 2005-2008 | University of Wisconsin |
| 3 | 108 | June-Reg | Sean McGowan | $$ | IF | 22 | 5/17/1977 | 6-6 | 240 | R | R | AAA | | Boston College |
| 4 | 138 | June-Reg | Jeremy Cunningham | | P | 20 | 8/4/1978 | 6-5 | 190 | R | R | A+ | | Cal Poly |
| 5 | 168 | June-Reg | Ryan Cox | $$ | P | 22 | 12/25/1976 | 6-3 | 210 | R | R | AAA | | Southern Illinois University |
| 6 | 198 | June-Reg | Ryan Pene | | OF | | | | 0 | | | A- | | Dixie State College of Utah |
| 7 | 228 | June-Reg | Joe Jester | | IF | 20 | 7/17/1978 | 5-10 | 180 | R | R | AAA | | University of Arkansas |
| 8 | 258 | June-Reg | Kevin Vent | | P | 22 | 6/1/1977 | 6-0 | 185 | R | R | AAA | | University of Arkansas |
| 9 | 288 | June-Reg | Josh Cook | | SS | 21 | 6/1/1978 | 6-2 | 195 | R | R | A+ | | Yuba (Calif.) Community College |
| 10 | 318 | June-Reg | Anthony Yacco | | P | 18 | 12/2/1980 | 6-3 | 220 | R | R | A+ | | Mahopac High School (Mahopac,NY) |
| 11 | 348 | June-Reg | Jeff Verplancke | | P | 21 | 11/18/1977 | 6-3 | 200 | R | R | AAA | | Cal State Los Angeles |
| 12 | 378** | June-Reg | Ronnie Merrill | | IF | 20 | 11/13/1978 | 6-1 | 185 | B | R | AAA | | University of Tampa |
| 13 | 408 | June-Reg | Fletcher Lee | | P | 23 | 1/29/1976 | 6-1 | 190 | R | R | A+ | | Lewis and Clark College |
| 14 | 438** | June-Reg | Mike Meyer | | P | 21 | 12/18/1977 | 6-2 | 180 | R | R | A+ | | University of Arizona |
| 15 | 468 | June-Reg | Harold Featherstone | | P | 22 | 6/20/1977 | 6-2 | 175 | R | R | A+ | | North Carolina A&T State University |
| 16 | 498 | June-Reg | Micah Holst | | OF | 22 | 3/5/1977 | 6-2 | 200 | R | R | AAA | | Southwest Missouri State University |
| 17 | 528 | June-Reg | Vance Cozier | | P | 21 | 9/26/1977 | 6-6 | 245 | R | R | AA | | St. Bonaventure University |
| 18 | 558 | June-Reg | Brian Meagher | | P | | | | 0 | | | A- | | College of San Mateo |
| 19 | 588 | June-Reg | Ryan Cheo | | P | | | | | | | College | | Saddleback College |
| 20 | 618 | June-Reg | Anthony Turco | | C | 19 | 10/8/1979 | 5-9 | 175 | L | R | AA | | St. Petersburg College |
| 21 | 648 | June-Reg | Ryan Luther | | C | 22 | 1/21/1977 | 6-10 | 185 | R | R | AAA | | Lewis and Clark College |
| 22 | 678 | June-Reg | Jason Barrow | | OF | | | | 0 | | | - | | Chemeketa Community College |
| 23 | 708 | June-Reg | Michael Zirelli | | P | | | | 0 | | | A+ | | Cal Poly |
| 24 | 738** | June-Reg | Bill Murphy | | P | 18 | 5/9/1981 | 6-0 | 190 | L | L | MLB | 2007-2007 | Arlington High School (Riverside,CA) |
| 25 | 768** | June-Reg | Andrew Edwards | | P | 17 | 11/22/1981 | 6-5 | 215 | R | R | A- | | Christ the King High School (Flushing,NY) |
| 26 | 798 | June-Reg | Kevin Alexander | | IF | 18 | 9/15/1980 | 5-10 | 162 | R | R | A+ | - | Modesto Junior College |
| 27 | 828 | June-Reg | Troy Gustafson | | LF | 19 | 6/13/1980 | 6-3 | 190 | R | R | A+ | | Blaine High School (Blaine,MN) |
| 28 | 858 | June-Reg | Lars Hansen | | C | | | | 0 | | | - | | University of Hawaii-Manoa |
| 29 | 888 | June-Reg | Troy Ransom | | P | 20 | 7/9/1978 | 6-2 | 180 | R | R | A+ | | South Mountain Community College |
| 30 | 918 | June-Reg | Ryan Davis | | | 20 | 11/2/1978 | 6-2 | 190 | L | L | A+ | | Cosumnes River College |
| 31 | 948 | June-Reg | Scott Daeley | | | 22 | 2/25/1977 | 5-10 | 178 | R | R | AA | | Wake Forest University |
| 32 | 978** | June-Reg | Tim Gilhooly | | OF | 17 | 8/31/1981 | 6-3 | 210 | R | R | A- | - | San Ramon Valley High School (Danville,CA) |
| 33 | 1008 | June-Reg | Kavonski Chatman | | P-CF | | | | 0 | | | - | | Northeast Texas Community College |
| 34 | 1038** | June-Reg | Scott Shoemaker | | | 17 | 9/21/1981 | 6-4 | 215 | R | R | AAA | | Granite Hills High School (El Cajon,CA) |
| 35 | 1068 | June-Reg | Robert Lorona | | SS | | | | 0 | | | - | | Hayden High School (Winkelman,AZ) |
| 36 | 1098 | June-Reg | Bryan Lang | | OF | | | | 0 | | | - | | Scottsdale Community College |
| 37 | 1128 | June-Reg | Chris Norris | | P | 19 | 12/13/1979 | 6-4 | 225 | L | R | - | | Central Arizona College |
| 38 | 1158** | June-Reg | Drew Endicott | | P | 18 | 3/30/1981 | 6-3 | 180 | R | R | AA | | Carthage High School (Carthage,MO) |
| 39 | 1188 | June-Reg | Paul Turco | | | 22 | 10/17/1976 | 5-11 | 162 | B | R | A+ | | Auburn University |
| 40 | 1218** | June-Reg | Travis Veracka | | | | | | | | | College | | University of Massachusetts |
| 41 | 1247 | June-Reg | Winston Woods | | CF | | | | 0 | | | - | | Broward Community College |
| 42 | 1275** | June-Reg | Jason Hickman | | | 20 | 7/11/1978 | 6-2 | 205 | L | L | Rookie | | Ball State University |
| 43 | 1302 | June-Reg | Brett Cayton | | P | 15 | 3/5/1984 | 6-2 | 215 | R | R | College | | Fountain Valley High School (Fountain Valley,CA) |
| 44 | 1329 | June-Reg | Daniel August | | P | | | | 0 | | | - | | St. Petersburg College |
| 45 | 1354** | June-Reg | Chad Ashlock | | P | 20 | 7/17/1978 | 6-2 | 200 | R | R | A- | | University of Texas |
| 46 | 1378 | June-Reg | Wes Faust | | P | 21 | 12/3/1977 | 6-8 | 240 | R | R | A | | Oklahoma Baptist University |
| 47 | 1402 | June-Reg | Oscar Vargas | | | 19 | 5/24/1980 | 5-11 | 175 | R | R | Ind | | Chabot College |
| 48 | 1426 | June-Reg | Jamie Aloy | | 1B | | | | 0 | | | - | | University of Hawaii-Manoa |
| 49 | 1449 | June-Reg | Josh Sousa | | P | | | | 0 | | | - | | Modesto Junior College |
| 50 | 1470 | June-Reg | Brian Grochol | | OF | | | | 0 | | | A- | | Canada College |
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