| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 8 | June-Reg | Bobby Bradley | $$ | P | 18 | 12/15/1980 | 6-1 | 180 | R | R | AAA | | Wellington Christian High School (Wellington,FL) |
| 2 | 59 | June-Reg | Ryan Doumit | | C | 18 | 4/3/1981 | 6-0 | 180 | B | R | MLB | 2005-2008 | Moses Lake High School (Moses Lake,WA) |
| 3 | 92 | June-Reg | Aron Weston | | RF-CF | 18 | 11/5/1980 | 6-5 | 173 | L | L | AA | | Solon High School (Solon,IA) |
| 4 | 122 | June-Reg | Justin Reid | | P | 22 | 6/30/1977 | 6-5 | 212 | R | R | AAA | | University of California, Davis |
| 5 | 152 | June-Reg | J.R. House | | C | 19 | 11/11/1979 | 5-10 | 200 | R | R | MLB | 2003-2007 | Seabreeze High School (Daytona Beach,FL) |
| 6 | 182 | June-Reg | B.J. Barns | | OF | 21 | 7/21/1977 | 6-4 | 205 | L | R | AA | | Duquesne University |
| 7 | 212 | June-Reg | Matthew Schneider | | CF | 21 | 5/19/1978 | 6-6 | 237 | L | R | A+ | | University of North Florida |
| 8 | 242 | June-Reg | Jon Searles | | P | 18 | 1/18/1981 | 6-3 | 205 | R | R | AA | | Huntington High School (Huntington,FL) |
| 9 | 272 | June-Reg | Shane Wright | | P | 22 | 10/28/1976 | 6-3 | 224 | R | R | A | | Texas Tech University |
| 10 | 302 | June-Reg | Jeremy Sickles | | C | 21 | 1/16/1978 | 6-4 | 194 | R | R | A+ | | Cal State Northridge |
| 11 | 332 | June-Reg | Craig Munroe | | 1B | | | | | | | College | | University of Maryland |
| 12 | 362 | June-Reg | James Langston | | 3B-OF | 21 | 3/23/1978 | 6-3 | 198 | B | R | AA | | Georgia State University |
| 13 | 392 | June-Reg | Joshua Hudnall | | IF | 19 | 2/20/1980 | 6-3 | 173 | R | R | A+ | | Ouachita Christian School High School (Monroe,LA) |
| 14 | 422 | June-Reg | Daniel Hudson | | P | 21 | 10/24/1977 | 6-2 | 185 | B | R | A- | | Mississippi Gulf Coast Community College |
| 15 | 452 | June-Reg | Michael Burruezo | | P-OF | | | | | | | A- | | Jesuit High School (Tampa,FL) |
| 16 | 482 | June-Reg | Justin Martin | | 2B | 23 | 2/19/1976 | 5-8 | 160 | B | R | AA | | University of Nevada |
| 17 | 512 | June-Reg | Cliff Riek | | 3B | 18 | 4/15/1981 | 6-1 | 195 | R | R | A- | | Cary High School (Cary,NC) |
| 18 | 542 | June-Reg | Ryan Dorsey | | 2B | 17 | 8/29/1981 | 6-1 | 160 | R | R | A+ | | Riverdale Baptist High School (Upper Marlboro,MD) |
| 19 | 572** | June-Reg | Brian Tallet | | P | 21 | 9/21/1977 | 6-7 | 210 | L | L | MLB | 2002-2008 | Louisiana State University |
| 20 | 602 | June-Reg | Elliott Sarabia | | SS | | | | 0 | R | R | A- | | UNLV |
| 21 | 632 | June-Reg | Derek Ver Helst | | P | | | | 0 | | | - | | Spearfish High School (Spearfish,SD) |
| 22 | 662** | June-Reg | Jason Wilson | | | | | | | | | College | | San Augustine High School (San Augustine,TX) |
| 23 | 692 | June-Reg | Mike Piercy | | OF | 23 | 6/24/1976 | 6-0 | 210 | L | L | A+ | | Kean U. (Kean U.) |
| 24 | 722 | June-Reg | Josh Bonifay | | IF | 20 | 7/30/1978 | 6-0 | 187 | R | R | AA | | University of North Carolina |
| 25 | 752 | June-Reg | Aaron Story | | P | 18 | 10/2/1980 | 6-0 | 179 | L | L | A- | | Lawrence County High School (Lawrenceburg,TN) |
| 26 | 782** | June-Reg | Ja'Mar Clanton | | SS | 17 | 7/14/1981 | 6-0 | 170 | R | R | A+ | | Proviso West High School (Hillside,IL) |
| 27 | 812 | June-Reg | Kenny Henderson | | P | 21 | 11/9/1977 | 6-5 | 230 | R | L | A | | New York Tech |
| 28 | 842 | June-Reg | Andrew Green | | | | | | | | | College | | Ouachita Parish High School (Monroe,LA) |
| 29 | 872 | June-Reg | Rodney Hancock | | | | | | | | | A- | | The Citadel |
| 30 | 902 | June-Reg | Derek Hurley | | P | 21 | 7/25/1977 | 6-3 | 178 | L | L | A+ | | Seton Hall University |
| 31 | 932 | June-Reg | Walter Young | | 1B | 19 | 2/18/1980 | 6-5 | 290 | L | R | MLB | 2005-2005 | Purvis High School (Purvis,MS) |
| 32 | 962 | June-Reg | Jason Biddlestone | | P | 20 | 8/12/1978 | 6-4 | 228 | R | R | A- | | Columbus State Community College |
| 33 | 992 | June-Reg | Michael Sabens | | P | 22 | 1/21/1977 | 6-1 | 200 | R | R | A | | Berry College (Ga.) |
| 34 | 1022 | June-Reg | Kurt Bultmann | | | 22 | 2/10/1977 | 5-9 | 162 | R | R | A+ | | Clemson University |
| 35 | 1052 | June-Reg | Ramonzo Douglas | | 1B | | | | 0 | | | Rookie | | University of Louisiana-Lafayette |
| 36 | 1082 | June-Reg | Ryan Fillingim | | C-IF | 18 | 4/10/1981 | 6-3 | 205 | L | R | College | | Fairhope High School (Fairhope,AL) |
| 37 | 1112 | June-Reg | Troy Satterfield | | P | | | | | | | A- | | University of Central Florida |
| 38 | 1142 | June-Reg | Ryan Stanek | | C | | | | 0 | | | - | | New Providence High School (New Providence,NJ) |
| 39 | 1172 | June-Reg | Patrick O'Brien | | P | 18 | 11/20/1980 | 6-4 | 198 | R | R | AA | | Walsh Jesuit High School (Cuyahoga Falls,OH) |
| 40 | 1202** | June-Reg | Seth Hill | | | 18 | 5/6/1981 | 6-4 | 225 | L | L | A+ | | Sandwich High School (Sandwich,IL) |
| 41 | 1232 | June-Reg | Brian Messer | | P | 22 | 4/6/1977 | 6-4 | 208 | R | R | A | | University of New Mexico |
| 42 | 1260 | June-Reg | Frank Torre | | 1B | 67 | 12/30/1931 | 6-3 | 205 | L | L | MLB | 1956-1963 | |
| 43 | 1287 | June-Reg | Daniel Stringer | | | | | | | | | College | | Brazoswood High School (Clute,TX) |
| 44 | 1314** | June-Reg | Michael Oehlberg | | P | | | | 0 | | | - | | Guilford High School (Rockford,IL) |
| 45 | 1340** | June-Reg | Raul Nieves | | IF | 20 | 1/4/1979 | 6-2 | 195 | B | R | AAA | | Mobile Barranquitas (PR) |
| 46 | 1365 | June-Reg | Christian Batcheller | | C | | | | 0 | | | A- | | Washington and Lee University |
| 47 | 1389 | June-Reg | Bryce Morrison | | | 19 | 2/4/1980 | 6-5 | 215 | L | R | Ind | | Leander High School (Leander,TX) |
| 48 | 1413** | June-Reg | Jude Voltz | | IF | 21 | 5/5/1978 | 6-6 | 215 | L | L | A+ | | University of Mississippi |
| 49 | 1436 | June-Reg | Brian Pollard | | CF | | | | 0 | | | - | | University of Florida |
| 50 | 1459 | June-Reg | Landon Jacobsen | | P | 20 | 5/4/1979 | 6-3 | 203 | R | R | AAA | | Trinidad State Junior College |
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