| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 12 | June-Reg | Brett Myers | $$ | P | 18 | 8/17/1980 | 6-4 | 215 | R | R | MLB | 2002-2008 | Jacksonville University |
| 2 | 63** | June-Reg | Jason Cooper | | H | 18 | 12/6/1980 | 6-2 | 220 | L | L | AAA | | Moses Lake High School (Moses Lake,WA) |
| 3 | 96 | June-Reg | Russ Jacobson | | C | 20 | 8/9/1978 | 6-3 | 210 | R | R | AAA | | University of Miami (Florida) |
| 4 | 126 | June-Reg | Brad Pautz | | P | 22 | 1/3/1977 | 6-3 | 190 | R | R | AA | | University of Minnesota |
| 5 | 156** | June-Reg | Joe Saunders | | P | 18 | 6/16/1981 | 6-3 | 195 | L | L | MLB | 2005-2008 | West Springfield High School (Springfield,VA) |
| 6 | 186 | June-Reg | Daniel Tosca | | C | 18 | 11/1/1980 | 6-0 | 180 | L | R | A+ | - | Durant High School (Plant City,FL) |
| 7 | 216** | June-Reg | Dave Gil | | P | 20 | 10/1/1978 | 6-4 | 210 | R | R | AAA | | University of Miami (Florida) |
| 8 | 246 | June-Reg | Jesse Thrasher | | P | 18 | 12/20/1980 | 6-3 | 220 | R | R | Ind | | Benton High School (St. Joseph,MO) |
| 9 | 276 | June-Reg | Julio Collazo | | SS | 18 | 12/24/1980 | 5-10 | 155 | R | R | A | | Mississippi Delta Community College |
| 10 | 306 | June-Reg | Marlon Byrd | | OF | 21 | 8/30/1977 | 6-0 | 225 | R | R | MLB | 2002-2008 | Georgia Perimeter College |
| 11 | 336 | June-Reg | Richard Legette | | P | 18 | 2/6/1981 | 6-2 | 210 | L | R | Rookie | | Stratford High School (Goose Creek,SC) |
| 12 | 366 | June-Reg | Brian Bush | | OF | 22 | 1/3/1977 | 6-1 | 180 | R | R | A+ | | University of Texas-San Antonio |
| 13 | 396 | June-Reg | Frank Brooks | | P | 20 | 9/6/1978 | 6-1 | 195 | L | L | MLB | 2004-2005 | Saint Peter's |
| 14 | 426 | June-Reg | Jovanathan Clark | | LF | | | | 0 | | | - | | Vallejo High School (Vallejo,CA) |
| 15 | 456 | June-Reg | Mark Outlaw | | P | 22 | 1/2/1977 | 6-1 | 180 | L | L | AA | | Baylor University |
| 16 | 486 | June-Reg | Chris Keelin | | P | 22 | 3/3/1977 | 6-2 | 190 | R | R | AA | | Montclair State University |
| 17 | 516 | June-Reg | Brad Tucker | | P | | | | 0 | | | A- | | Pepperdine University |
| 18 | 546 | June-Reg | Rob Avila | | C | 20 | 9/4/1978 | 5-11 | 200 | R | R | AA | | Master's College, The |
| 19 | 576** | June-Reg | Thomas Saye | | P | 18 | 4/6/1981 | 6-0 | 180 | B | R | Rookie | | Newberry High School (Newberry,SC) |
| 20 | 606 | June-Reg | Hector Serrano | | C | | | | 0 | | | - | | Juan Ponce De Leon High School (Sabana Hoyos,PR) |
| 21 | 636 | June-Reg | Aaron Merhoff | | LF | 23 | 11/11/1975 | 6-2 | 220 | R | R | A+ | | Texas Lutheran University |
| 22 | 666 | June-Reg | Justin Duarte | | C | 22 | 9/14/1976 | 6-2 | 210 | R | R | AA | | Azusa Pacific University (Calif.) |
| 23 | 696 | June-Reg | Todd Eagle | | C | | | | 0 | | | Rookie | | Albany High School (Albany,CA) |
| 24 | 726 | June-Reg | Joseph Schley | | CF | | | | 0 | | | A- | | Southern Illinois University |
| 25 | 756 | June-Reg | Brian Hitchcox | | SS | 20 | 7/21/1978 | 5-11 | 175 | R | R | AAA | | Samford University |
| 26 | 786 | June-Reg | Justin Fry | | P | 22 | 8/20/1976 | 6-3 | 195 | R | R | A+ | | Ohio State University |
| 27 | 816 | June-Reg | Dan O'Neill | | | 22 | 12/1/1976 | 6-1 | 180 | R | L | AAA | | University of Illinois |
| 28 | 846 | June-Reg | Thomas Batson | | 3B | 22 | 2/9/1977 | 5-11 | 180 | R | R | AA | | Northwestern State University |
| 29 | 876 | June-Reg | Randon Ho | | P | | | | 0 | | | - | | University of Hawaii-Manoa |
| 30 | 906 | June-Reg | Chad Smith | | P | | | | 0 | | | A- | | Indiana University |
| 31 | 936 | June-Reg | Wade Van Vark | | CF | | | | 0 | | | Rookie | | Central (IA) |
| 32 | 966 | June-Reg | Jay Sitzman | | OF | 21 | 3/13/1978 | 6-3 | 195 | L | L | AA | | Arizona State University |
| 33 | 996 | June-Reg | Dean Muthig | | 3B | 21 | 8/24/1977 | 5-11 | 205 | R | R | A- | | Carthage College |
| 34 | 1026 | June-Reg | Charles Carey | | P | | | | 0 | | | - | | Cuesta College |
| 35 | 1056 | June-Reg | Chris Herman | | SS | | | | | | | - | | Mount San Antonio College |
| 36 | 1086 | June-Reg | Todd Simo | | | | | | | | | College | | New Providence High School (New Providence,NJ) |
| 37 | 1116 | June-Reg | Ryan Brookman | | P | 22 | 2/24/1977 | 6-0 | 190 | R | R | A | | University of Wisconsin |
| 38 | 1146** | June-Reg | Jon Uhl | | P | 18 | 10/6/1980 | 6-2 | 190 | R | R | A | | Leto High School (Tampa,FL) |
| 39 | 1176** | June-Reg | Kameron Loe | | P | 17 | 9/10/1981 | 6-8 | 220 | R | R | MLB | 2004-2008 | Granada Hills High School (Granada Hills,CA) |
| 40 | 1206 | June-Reg | Lawrence Alexander | | OF | 18 | 12/16/1980 | 6-1 | 170 | R | R | Rookie | | Chandler High School (Chandler,OK) |
| 41 | 1236 | June-Reg | Todd Oetting | | C | 18 | 12/4/1980 | 6-2 | 200 | R | R | Ind | | Jefferson City High School (Jefferson City,MO) |
| 42 | 1264 | June-Reg | Erick Rivera | | OF | 18 | 5/22/1981 | 6-2 | 200 | R | R | A+ | | Luis Munoz Marin High School (Anasco,PR) |
| 43 | 1291 | June-Reg | Nicholas White | | P | | | | 0 | | | - | | Arapahoe High School (Littleton,CO) |
| 44 | 1318** | June-Reg | Jordan Pickens | | 1B | 18 | 6/10/1981 | 6-2 | 190 | R | R | A+ | | |
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