| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 37 | June-Reg | Jason Repko | $$ | OF | 18 | 12/27/1980 | 5-11 | 185 | R | R | MLB | 2005-2006 | Hanford High School (Richland,WA) |
| 2 | 69 | June-Reg | Brennan King | | IF | 18 | 1/20/1981 | 6-3 | 180 | R | R | AAA | | Oakland High School (Mufreesboro,TN) |
| 2 | 83** | June-Reg | Drew Meyer | | SS | 17 | 8/29/1981 | 5-10 | 180 | L | R | MLB | 2006-2006 | Bishop England High School (Charleston,SC) |
| 4 | 134 | June-Reg | Joe Thurston | | 2B | 19 | 9/29/1979 | 5-11 | 175 | L | R | MLB | 2002-2008 | Sacramento City College |
| 5 | 164 | June-Reg | Phil Devey | | P | 22 | 5/31/1977 | 6-0 | 170 | L | L | AAA | | University of Louisiana-Lafayette |
| 6 | 194 | June-Reg | Shane Victorino | | OF | 18 | 11/30/1980 | 5-9 | 160 | R | R | MLB | 2003-2008 | St. Anthony High School (Wailuku, HI) |
| 7 | 224 | June-Reg | Jose Escalera | | IF | 18 | 10/21/1980 | 6-3 | 230 | R | R | A | | Carlos Escobar Lopez High School (Loiza,PR) |
| 8 | 254 | June-Reg | T.J. Nall | | P | 18 | 11/4/1980 | 6-1 | 175 | R | R | AAA | | Schaumburg High School (Schaumburg,IL) |
| 9 | 284 | June-Reg | Jon Berry | | P | 21 | 11/17/1977 | 6-1 | 190 | R | R | AA | | Newberry College |
| 10 | 314 | June-Reg | Lamont Matthews | | DH | 21 | 6/15/1978 | 6-2 | 210 | L | L | AAA | | Oklahoma State University |
| 11 | 344 | June-Reg | Eric Junge | | P | 22 | 1/5/1977 | 6-5 | 215 | R | R | MLB | 2002-2003 | Bucknell University |
| 12 | 374 | June-Reg | Josh Dalton | | SS | | | | 0 | | | A- | | Louisiana State University |
| 13 | 404 | June-Reg | Jonathan Hale | | C | | | | 0 | | | - | | Southwest Missouri State University |
| 14 | 434 | June-Reg | Randy Hadden | | P | 21 | 11/1/1977 | 6-2 | 191 | R | R | A+ | | University of South Carolina |
| 15 | 464 | June-Reg | Wade Parrish | | P | 21 | 11/13/1977 | 6-1 | 195 | L | L | AAA | | Washington State University |
| 16 | 494** | June-Reg | Tymber Lee | | P | 21 | 9/8/1977 | 6-2 | 185 | R | R | A- | | Wichita State University |
| 17 | 524 | June-Reg | Scott Martin | | P | 21 | 5/10/1978 | 6-1 | 210 | R | L | A+ | | Central Connecticut State University |
| 18 | 554 | June-Reg | John Rozich | | C | | | | | | | A- | | Kutztown University of Pennsylvania |
| 19 | 584 | June-Reg | Harold Eckert | | P | 21 | 7/18/1977 | 6-3 | 218 | R | R | AAA | | Florida International University |
| 20 | 614** | June-Reg | Ryan Hamilton | | P | 16 | 8/5/1982 | 6-2 | 210 | R | R | Ind | | University of San Diego |
| 21 | 644 | June-Reg | Chris Snow | | CF | 18 | 12/19/1980 | 6-1 | 175 | R | R | Rookie | | Desert Vista High School (Phoenix,AZ) |
| 22 | 674** | June-Reg | Tim Cunningham | | P | 18 | 10/19/1980 | 6-3 | 195 | L | L | A | | Rocklin High School (Rocklin,CA) |
| 23 | 704 | June-Reg | Reggie Abercrombie | | OF | 18 | 7/15/1980 | 6-3 | 210 | R | R | MLB | 2006-2008 | Columbus High School (Columbus,GA) |
| 24 | 734** | June-Reg | Shane Nance | | P | 21 | 9/7/1977 | 5-8 | 180 | L | L | MLB | 2002-2004 | University of Houston |
| 25 | 764** | June-Reg | Clint Chauncey | | C | 18 | 1/1/1981 | 6-1 | 180 | R | R | AA | | Terry Parker High School (Jacksonville,FL) |
| 26 | 794 | June-Reg | Traviss Hodge | | 1B | | | | 0 | | | - | | Los Angeles Pierce College |
| 27 | 824 | June-Reg | Luke Robertson | | P | 20 | 6/30/1979 | 6-4 | 220 | R | R | A+ | | Butler County Community College |
| 28 | 854 | June-Reg | Michael Keirstead | | P | 18 | 1/26/1981 | 6-0 | 180 | R | R | A+ | | St. Malachy's (Musquash,Can.) |
| 29 | 884** | June-Reg | Zachary Cates | | 1B | 19 | 9/21/1979 | 6-3 | 210 | L | R | A+ | | Mesa Community College |
| 30 | 914** | June-Reg | Ryan Brnardic | | P | 17 | 11/4/1981 | 6-4 | 215 | L | R | Ind | | Sandwich High School (LaSalle,ON) |
| 31 | 944** | June-Reg | Justin Glenn | | | | | | | | | College | | Sheridan High School (Little Rock,AR) |
| 32 | 974 | June-Reg | Nolan McManus | | P | | | | 0 | | | - | | Sierra College |
| 33 | 1004 | June-Reg | Clifton Wren | | C | 22 | 4/13/1977 | 6-1 | 220 | R | R | A+ | | Mississippi State University |
| 34 | 1034** | June-Reg | Nom Siriveaw | | 3B | 18 | 12/9/1980 | 6-3 | 195 | B | R | A | | Eastern Oklahoma State Community College |
| 35 | 1064 | June-Reg | Kegan O'toole | | C | | | | 0 | | | - | | Henry M. Jackson High School (Mill Creek,WA) |
| 36 | 1094 | June-Reg | Ryan Harris | | | | | | | | | College | | Woodstock High School (Woodstock,NB) |
| 37 | 1124 | June-Reg | Miguel Heredia | | P | 19 | 8/22/1979 | 6-4 | 0 | | | - | | Eastern Oklahoma State Community College |
| 38 | 1154** | June-Reg | Chris Hunter | | P | 18 | 12/12/1980 | 6-4 | 200 | R | R | AAA | | Mountain View High School (Orem,UT) |
| 39 | 1184 | June-Reg | Christopher Hanne | | P | | | | 0 | | | - | | Duluth High School (Duluth,GA) |
| 40 | 1214 | June-Reg | Michael Pelsnik | | P | | | | 0 | | | - | | Horizon High School (Scottsdale,AZ) |
| 41 | 1243 | June-Reg | Keith Godbolt | | OF | 18 | 11/6/1980 | 6-1 | 190 | R | R | Rookie | | Hillsborough High School (Tampa,FL) |
| 42 | 1271** | June-Reg | Rob Harrand | | P | 19 | 1/11/1980 | 6-5 | 205 | R | R | A- | | |
| 43 | 1298** | June-Reg | Kyle Bateman | | | | | | | | | College | | Coconino High School (Flagstaff,AZ) |
| 44 | 1325 | June-Reg | Robert Sumner | | 1B | | | | 0 | | | - | | Monsignor Pace High School (Miami,FL) |
| 45 | 1350** | June-Reg | Erik Lohse | | P | 19 | 6/5/1980 | 6-1 | 205 | R | R | AA | | Butte Community College |
| 46 | 1374** | June-Reg | Chris Bell | | P | 18 | 9/24/1980 | 6-3 | 200 | R | R | Rookie | | Columbus High School (Miami,FL) |
| 47 | 1398 | June-Reg | Joey Black | | P | | | | 0 | | | - | | Bonneville High School (Ogden,UT) |
| 48 | 1422 | June-Reg | Scott Wilson | | C | | | | 0 | | | - | | Ellensburg High School (Ellensburg,WA) |
| 49 | 1445 | June-Reg | Jayson Casiano | | 1B | | | | 0 | | | - | | Monserrate Leon De Irriza High School (Cabo Rojo,PR) |
| 50 | 1466 | June-Reg | Jonathan Morel | | 1B | | | | 0 | | | - | | Colegio San Agustin (Cabo Rojo,PR) |
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