| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 7 | June-Reg | Kyle Snyder | $$ | P | 21 | 9/9/1977 | 6-8 | 220 | R | R | MLB | 2003-2008 | University of North Carolina |
| 1 | 25 | June-Reg | Mike MacDougal | $$ | P | 22 | 3/5/1977 | 6-4 | 195 | R | R | MLB | 2001-2008 | Wake Forest University |
| 1 | 32 | June-Reg | Jay Gehrke | $$ | P | 21 | 11/1/1977 | 6-6 | 225 | R | R | A+ | | Pepperdine University |
| 1 | 43 | June-Reg | Jimmy Gobble | $$ | P | 17 | 7/19/1981 | 6-3 | 190 | L | L | MLB | 2003-2008 | John S. Battle High School (Bristol,VA) |
| 2 | 54 | June-Reg | Brian Sanches | | P | 20 | 8/8/1978 | 6-0 | 190 | R | R | MLB | 2006-2008 | Lamar University |
| 2 | 58 | June-Reg | Wes Obermueller | | P | 22 | 12/22/1976 | 6-2 | 195 | R | R | MLB | 2002-2007 | University of Iowa |
| 3 | 91** | June-Reg | Kiki Bengochea | | P | 18 | 12/4/1980 | 6-2 | 190 | R | R | A+ | | Columbus High School (Miami,FL) |
| 4 | 121 | June-Reg | Mackeel Rodgers | | SS | 18 | 4/30/1981 | 6-1 | 180 | B | R | A | | Jackson High School (Miami,FL) |
| 5 | 151 | June-Reg | Ken Harvey | | 1B | 21 | 3/1/1978 | 6-2 | 240 | R | R | MLB | 2001-2005 | University of Nebraska |
| 6 | 181 | June-Reg | Ryan Baerlocher | | P | 21 | 8/6/1977 | 6-5 | 220 | R | R | AAA | | Lewis and Clark College |
| 7 | 211 | June-Reg | James Mcauley | | C | 21 | 12/17/1977 | 6-0 | 185 | R | R | A+ | | University of Louisville |
| 8 | 241 | June-Reg | Eric Nelson | | IF | 22 | 5/2/1977 | 5-11 | 180 | B | R | AA | | Baylor University |
| 9 | 271 | June-Reg | Mark Ellis | $$ | 2B | 22 | 6/6/1977 | 5-11 | 180 | R | R | MLB | 2002-2008 | University of Florida |
| 10 | 301 | June-Reg | Jesse Kurtz-Nicholl | | P | 22 | 6/7/1977 | 6-0 | 185 | L | L | A+ | | Rice University |
| 11 | 331 | June-Reg | Edwin Franco | | P | | | | | | | A- | | Florida International University |
| 12 | 361 | June-Reg | Tony Cogan | | P | 22 | 12/21/1976 | 6-2 | 205 | L | L | MLB | 2001-2001 | Stanford University |
| 13 | 391 | June-Reg | Gregg Raymundo | | 3B | 22 | 3/3/1977 | 6-1 | 190 | R | R | AAA | | Pepperdine University |
| 14 | 421 | June-Reg | Jamey Shearin | | OF | | | | | | | College | | University of North Carolina |
| 15 | 451 | June-Reg | Casey Dunn | | C | 22 | 10/3/1976 | 5-10 | 190 | R | R | A+ | | Auburn University |
| 16 | 481** | June-Reg | Sam Smith | | P | 20 | 3/21/1979 | 6-4 | 210 | R | R | A+ | | Trinidad State Junior College |
| 17 | 511 | June-Reg | Brad Stiles | | P | 18 | 2/9/1981 | 6-5 | 230 | L | L | AA | | Lamar High School (Lamar,CO) |
| 18 | 541** | June-Reg | Brandon Medders | | P | 19 | 1/26/1980 | 6-2 | 185 | R | R | MLB | 2005-2008 | Shelton State Community College |
| 19 | 571 | June-Reg | Jermaine Smiley | | LF | 19 | 3/5/1980 | 6-2 | 200 | L | L | A- | | Bellevue Community College (WA) |
| 20 | 601 | June-Reg | Juan Figueroa | | P | 17 | 10/8/1981 | 6-0 | 180 | R | R | A | | Jose M. Lazaro (Carolina,PR) |
| 21 | 631** | June-Reg | Brian Nagore | | | | | | | | | College | | James Logan High School (Union City,CA) |
| 22 | 661 | June-Reg | Chad Santos | | IF | 18 | 4/28/1981 | 5-11 | 225 | L | L | MLB | 2006-2006 | St. Louis School High School (Kaneohe,HI) |
| 23 | 691** | June-Reg | Pat Magness | | OF | 21 | 1/19/1978 | 6-3 | 230 | L | R | AA | - | Wichita State University |
| 24 | 721 | June-Reg | Brian Johnson | | C | 22 | 4/20/1977 | 6-1 | 200 | R | R | AA | | University of Nebraska |
| 25 | 751 | June-Reg | Christopher Cabaj | | P | 21 | 11/12/1977 | 6-10 | 255 | | | Rookie | | Ball State University |
| 26 | 781 | June-Reg | Raul Garcia | | | 22 | 12/23/1976 | 5-9 | 170 | R | R | A | | Florida International University |
| 27 | 811 | June-Reg | Ben Carter | | | | | | | | | College | | Bowie High School (Austin,TX) |
| 28 | 841** | June-Reg | Brian Lockwood | | P | 18 | 2/20/1981 | 6-2 | 170 | R | R | AA | | Torrance High School (Torrance,CA) |
| 29 | 871 | June-Reg | Lukas Guidroz | | P | | | 5-11 | 180 | R | R | College | | Enterprise St. JC (Enterprise St. JC) |
| 30 | 901 | June-Reg | Richard Frink | | C | | | | 0 | | | - | | Mission Bay High School (San Diego,CA) |
| 31 | 931 | June-Reg | Jason Crear | | CF | | | | 0 | | | - | | C.E. King High School (Houston,TX) |
| 32 | 961 | June-Reg | Jason Arre | | | | | | | | | College | | Toms River East High School (Toms River,NJ) |
| 33 | 991 | June-Reg | Mike Clay | | SS-C | 22 | 10/3/1976 | 6-0 | 200 | R | R | A | | Southeastern Oklahoma State University |
| 34 | 1021 | June-Reg | William Austin | | P | | | | 0 | | | - | | Salina High School (Salina,OK) |
| 35 | 1051 | June-Reg | Marcus Wyatt | | RF-CF | | | | 0 | | | - | | Fontana High School (Fontana,CA) |
| 36 | 1081 | June-Reg | Julian Gonzalez | | RF | | | 6-3 | 220 | R | R | A | | University of Virginia |
| 37 | 1111** | June-Reg | Bryan Bullington | | P | 18 | 9/30/1980 | 6-5 | 220 | R | R | MLB | 2005-2007 | Madison Consolidated High School (Madison,IN) |
| 38 | 1141 | June-Reg | Adam Lingenfelter | | P | 19 | 11/21/1979 | 6-3 | 215 | R | R | Rookie | | Florida Junior College |
| 39 | 1171 | June-Reg | Abel Garcia | | P | | | | 0 | L | L | Rookie | | Laredo Community College |
| 40 | 1201** | June-Reg | Jason Fransz | | OF | 18 | 2/5/1981 | 6-3 | 200 | R | R | A+ | | Arlington High School (Riverside,CA) |
| 41 | 1231 | June-Reg | Herman Wright | | CF | | | | 0 | | | - | | Odem High School (Odem,TX) |
| 42 | 1259 | June-Reg | Anthony Mercado | | P | | | | 0 | | | - | | Dr Veve Calzada (Fajardo,PR) |
| 43 | 1286 | June-Reg | Keronn Walker | | C | 20 | 8/29/1978 | 6-2 | 210 | B | R | Ind | | Bluefield College |
| 44 | 1313 | June-Reg | Shane Menn | | | | | | | | | College | | Calallen High School (Corpus Christi,TX) |
| 45 | 1339 | June-Reg | Jacob Baker | | | 23 | 6/18/1976 | 6-3 | 220 | R | R | A | | Rice University |
| 46 | 1364 | June-Reg | Jason Maloney | | P | | | | 0 | | | - | | Stranahan High School (Fort Lauderdale,FL) |
| 47 | 1388** | June-Reg | Greg Bauer | | P | 21 | 11/30/1977 | 6-1 | 195 | R | R | AA | | Wichita State University |
| 48 | 1412 | June-Reg | Lee Peach | | P | | | | 0 | | | College | | Memorial High School (Newburgh,IN) |
| 49 | 1435 | June-Reg | Kyle Middleton | | P | 19 | 6/13/1980 | 6-5 | 230 | R | R | AAA | | Jefferson Davis Community College |
| 50 | 1458 | June-Reg | Byron Russell | | LF | 18 | 11/24/1980 | 6-3 | 210 | L | L | Rookie | | Pamplico County High School (Bayboro,NC) |
| |