| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 10 | June-Reg | Carlos Pena | $$ | 1B | 20 | 5/17/1978 | 6-2 | 210 | L | L | MLB | 2001-2008 | Northeastern University |
| 2 | 53 | June-Reg | Cody Nowlin | | OF | 18 | 11/27/1979 | 6-3 | 190 | L | R | A+ | | Clovis High School (Clovis,CA) |
| 3 | 83** | June-Reg | Barry Zito | | P | 20 | 5/13/1978 | 6-4 | 205 | L | L | MLB | 2000-2008 | UCLA |
| 4 | 113 | June-Reg | Antwon Rollins | | OF | 18 | 3/18/1980 | 6-1 | 190 | R | R | A | | Encinal High School (Alameda,cA) |
| 5 | 143 | June-Reg | Ryan Dittfurth | | P | 18 | 10/18/1979 | 6-6 | 200 | R | R | AA | | Union (Union) |
| 6 | 173 | June-Reg | Frankie McGill | | P | 18 | 9/10/1979 | 6-1 | 200 | R | R | A | | Tate High School (Cantonment,FL) |
| 7 | 203 | June-Reg | John Stewart | | P | 20 | 7/9/1977 | 6-4 | 180 | L | L | A+ | | Western Michigan University |
| 8 | 233** | June-Reg | Bradley Ticehurst | | CF | 21 | 5/24/1977 | 6-2 | 200 | L | R | A | | USC |
| 9 | 263 | June-Reg | Andy Pratt | | P | 18 | 8/27/1979 | 5-11 | 160 | L | L | MLB | 2002-2004 | Chino Valley High School (Chino Valley,AZ) |
| 10 | 293 | June-Reg | Justin Backsmeyer | | P | 18 | 1/24/1980 | 6-4 | 220 | R | R | A+ | | De Smet Jesuit High School (Creve Coeur,MO) |
| 11 | 323 | June-Reg | Cesar Castaneda | | 3B | 21 | 11/30/1976 | 6-3 | 210 | R | R | A | | Dallas Baptist University |
| 12 | 353 | June-Reg | Daniel Boublis | | P | 21 | 3/7/1977 | 6-0 | 190 | R | R | A | | Villanova University |
| 13 | 383 | June-Reg | Jeremiah Bullock | | P | 18 | 12/27/1979 | 6-1 | 180 | L | L | A | | Kuna High School (Kuna,ID) |
| 14 | 413 | June-Reg | Derek Ottevaere | | 1B | 22 | 12/24/1975 | 6-2 | 215 | R | R | A | | Western Michigan University |
| 15 | 443 | June-Reg | William Vigeland | | P | 21 | 10/26/1976 | 6-1 | 185 | R | R | A+ | | University of Washington |
| 16 | 473 | June-Reg | Domingo Valdez | | P | 18 | 6/27/1980 | 6-2 | 220 | L | L | A+ | | Moody High School (Corpus Christi,TX) |
| 17 | 503 | June-Reg | Dave Meliah | | OF | 21 | 3/11/1977 | 6-3 | 185 | L | R | AAA | | University of San Francisco |
| 18 | 533** | June-Reg | Michael Schaeffer | | | | | | | | | College | | Saint Louis University |
| 19 | 563** | June-Reg | Mike Daniel | | | 13 | 8/17/1984 | 6-4 | 185 | L | R | A+ | | Lambuth University (Tenn.) |
| 20 | 593** | June-Reg | Ryan Knox | | OF | 21 | 6/28/1977 | 6-0 | 185 | R | R | AAA | | Illinois State University |
| 21 | 623 | June-Reg | Matthew Kosderka | | P | 22 | 4/13/1976 | 6-2 | 215 | R | R | A+ | | Willamette University |
| 22 | 653** | June-Reg | John Shelley | | 3B | | | | 0 | | | - | | Santa Margarita Catholic High School (Rancho Santa Margarita,CA) |
| 23 | 683 | June-Reg | Frank Marciante | | 1B | 19 | 8/16/1978 | 6-3 | 215 | B | R | A | - | Palm Beach High School (West Palm Beach,FL) |
| 24 | 713 | June-Reg | Jason Edgar | | 2B | | | 6-0 | 175 | L | R | Rookie | | University of Connecticut |
| 25 | 743 | June-Reg | Mike Moorehead | | P | | | | 0 | | | - | | Franklin Cou. Bowersville (CA) |
| 26 | 773 | June-Reg | Jimmie Romano | | C | 21 | 3/31/1977 | 5-10 | 185 | R | R | A+ | | University of South Florida |
| 27 | 803 | June-Reg | Jeremy Jones | | C | 20 | 8/12/1977 | 6-3 | 195 | R | R | AA | | Arizona State University |
| 28 | 833 | June-Reg | Robert Lamarsh | | P | 21 | 7/14/1976 | 6-4 | 245 | R | L | A+ | | Southern Illinois University |
| 29 | 863** | June-Reg | Ronnie Corona | | P | 19 | 1/27/1979 | 6-0 | 188 | R | R | AA | | Cypress College |
| 30 | 893** | June-Reg | Jaime Bubela | | OF | 20 | 6/6/1978 | 6-1 | 200 | L | R | MLB | 2005-2005 | Blinn College |
| 31 | 923 | June-Reg | Marcus Quinones | | SS | 22 | 2/26/1976 | 6-1 | 190 | B | R | A+ | | Dallas Baptist University |
| 32 | 953 | June-Reg | Gregory Summers | | OF | | | | 0 | | | - | | Port St. Joe High School (Port St. Joe,FL) |
| 33 | 983 | June-Reg | Ryan Cullen | | P | 18 | 1/20/1980 | 6-4 | 220 | L | L | AAA | | Satellite High School (Satellite Beach,FL) |
| 34 | 1013 | June-Reg | Josh Bolingbroke | | C | | | | | | | College | | Pleasant Grove (HS.) |
| 35 | 1043 | June-Reg | William Villamil | | P | 17 | 8/20/1980 | 6-1 | 165 | L | L | Rookie | | Academia Pre. (Carolina,PR) |
| 36 | 1073 | June-Reg | Eric Moore | | P | 22 | 5/26/1976 | 6-4 | 200 | R | R | A | | Lambuth University (Tenn.) |
| 37 | 1103 | June-Reg | Jon Harris | | | 19 | 11/26/1978 | 6-1 | 195 | R | R | College | | Maple Woods High School (Gladstone,MO) |
| 38 | 1133** | June-Reg | Trent Pratt | | C | 18 | 8/25/1979 | 6-2 | 208 | R | R | AA | - | Tooele High School (Tooele,UT) |
| 39 | 1163 | June-Reg | Gregory Ryan | | P | | | | 0 | | | Rookie | | Eastern Michigan University |
| 40 | 1193 | June-Reg | Craig Mosher | | | 19 | 3/6/1979 | 6-0 | 200 | R | L | Ind | | Southern Richmond High School (Richmond,BC) |
| 41 | 1223** | June-Reg | Scott Nicholson | | P | 18 | 8/24/1979 | 6-0 | 170 | L | L | A- | | Lower Columb. (Longview,MA) |
| 42 | 1253** | June-Reg | Ross Peeples | | P | 18 | 2/20/1980 | 6-4 | 198 | L | L | A+ | | Crisp County High School (Cordele,GA) |
| 43 | 1281 | June-Reg | Derrick Foster | | P | | | | 0 | | | - | | Pell City High School (Pell City,AL) |
| 44 | 1307** | June-Reg | Josh Hollingsworth | | SS-3B | 18 | 6/28/1980 | 6-3 | 210 | R | R | A+ | | |
| 45 | 1331** | June-Reg | Greg Bochy | | P | 18 | 8/26/1979 | 6-2 | 200 | R | R | A | | Palomar College |
| 46 | 1355 | June-Reg | Damon Sementilli | | | | | | | | | College | | Norwalk Tech University |
| 47 | 1377 | June-Reg | Roy York | | | | | | | | | College | | Cowley County (Stroud,OK) |
| 48 | 1398 | June-Reg | Shaun Rudi | | OF | | | | 0 | | | - | | Baker High School (Baker City,OR) |
| 49 | 1417 | June-Reg | Marcis Hassell | | OF | | | | 0 | | | - | | Sam Houston High School (Arlington,TX) |
| 50 | 1433 | June-Reg | Albert Montes | | P | 18 | 12/11/1979 | 6-2 | 210 | R | R | AA | | Socorro High School (El Paso,TX) |
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