| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 22 | June-Reg | Matt Thornton | $$ | P | 21 | 9/15/1976 | 6-6 | 220 | L | L | MLB | 2004-2008 | Grand Valley State University |
| 2 | 65** | June-Reg | Jeff Verplancke | | P | 20 | 11/18/1977 | 6-3 | 200 | R | R | AAA | | Cal State Los Angeles |
| 3 | 95 | June-Reg | Andy Van Hekken | | P | 18 | 7/31/1979 | 6-3 | 175 | R | L | MLB | 2002-2002 | Holland High School (Holland,MI) |
| 4 | 125 | June-Reg | Jerry Amador | | OF | 18 | 1/13/1980 | 6-0 | 180 | R | R | A+ | | Luis Felipe Crespo (Camuy,PR) |
| 5 | 155 | June-Reg | Corey Freeman | | IF | 18 | 10/13/1979 | 5-11 | 165 | R | R | AAA | | King High School (Tampa,FL) |
| 6 | 185 | June-Reg | Jake Weber | | OF | 22 | 4/22/1976 | 5-11 | 188 | L | R | AAA | | University of North Carolina |
| 7 | 215 | June-Reg | Shawn Mccorkle | | 1B | 20 | 7/14/1977 | 6-5 | 230 | L | R | A+ | | Montclair State University |
| 8 | 245 | June-Reg | Craig Kuzmic | | IF | 21 | 5/2/1977 | 6-1 | 195 | B | R | AAA | | Texas A&M University |
| 9 | 275 | June-Reg | Neil Longo | | P | 20 | 9/5/1977 | 6-5 | 200 | R | R | A+ | | Manhattan College |
| 10 | 305** | June-Reg | Jason Pomar | | P | | | | | R | R | A- | | University of South Carolina |
| 11 | 335** | June-Reg | Jamey Shearin | | | | | | | | | College | | University of North Carolina |
| 12 | 365 | June-Reg | Justin Dunning | | P | 21 | 2/16/1977 | 6-3 | 210 | R | R | AA | | Stanford University |
| 13 | 395 | June-Reg | Israel Cruz | | SS | 18 | 9/2/1979 | 6-0 | 170 | R | R | A+ | | Puerto Rico. (Puerto Rico.) |
| 14 | 425 | June-Reg | Schuyler Doakes | | SS | 21 | 8/23/1976 | 5-7 | 160 | B | R | Ind | | Jackson State University |
| 15 | 455 | June-Reg | Wilfredo Quintana | | OF | 20 | 6/22/1978 | 5-11 | 181 | R | R | A+ | | Indian Hills (Centerville,Iowa.) |
| 16 | 485 | June-Reg | Patrick Barnes | | P | 18 | 9/25/1979 | 6-2 | 180 | R | L | A | | Englewood High School (Jacksonville,FL) |
| 17 | 515 | June-Reg | Steve Wright | | | 22 | 4/12/1976 | 5-11 | 185 | L | L | A- | | Liberty University |
| 18 | 545 | June-Reg | Craig Willis | | P | 21 | 7/8/1976 | 6-3 | 195 | R | R | A | | Pacific Lutheran University |
| 19 | 575 | June-Reg | Rick Southall | | 1B | 21 | 2/9/1977 | 6-3 | 225 | L | R | A+ | | Portland State University |
| 20 | 605** | June-Reg | Jon Nelson | | 1B | 18 | 1/16/1980 | 6-5 | 210 | R | R | AAA | | Timpanogos High School (Orem,UT) |
| 21 | 635 | June-Reg | Brandon DeJaynes | | | 17 | 9/10/1980 | 6-2 | 190 | R | R | A | | Quincy High School (Quincy,IL) |
| 22 | 665 | June-Reg | Mike Myers | | SS | 18 | 12/11/1979 | 6-1 | 190 | R | R | MLB | 2007-2007 | |
| 23 | 695 | June-Reg | Bryan Hartung | | | | | | | | | College | | Sinton High School (Sinton,TX) |
| 24 | 725 | June-Reg | Matt Woodward | | 1B | 22 | 12/1/1975 | 6-2 | 192 | R | R | A | | Florida State University |
| 25 | 755** | June-Reg | Craig Helmandollar | | P | | | | 0 | | | - | | North Stafford High School (Stafford,VA) |
| 26 | 785 | June-Reg | Caleb Balbuena | | P | 21 | 3/23/1977 | 6-7 | 240 | R | R | A+ | | Long Beach State University |
| 27 | 815 | June-Reg | Jason Crist | | P | | | | 0 | | | - | | Southwest Missouri State University |
| 28 | 845 | June-Reg | Bo Robinson | | | 22 | 8/21/1975 | 6-2 | 195 | R | R | AAA | | University of North Carolina |
| 29 | 875 | June-Reg | Derald Deason | | OF | | | | 0 | | | - | | Orange High School (Orange,CA) |
| 30 | 905** | June-Reg | John Rheinecker | | P | 19 | 5/29/1979 | 6-2 | 215 | L | L | MLB | 2006-2007 | Belleville High School (Belleville,IL) |
| 31 | 935 | June-Reg | Roy Wells | | P | 19 | 11/17/1978 | 6-3 | 195 | B | R | A | | Volunteer State Community College |
| 32 | 965 | June-Reg | Clayton Bried | | | | | | | | | College | | Apache Junction High School (Apache Junction,AZ) |
| 33 | 995** | June-Reg | Branden Pack | | 1B | 19 | 1/22/1979 | 6-3 | 215 | B | R | A+ | | Cypress College |
| 34 | 1024 | June-Reg | Nick Padilla | | P | 19 | 1/11/1979 | 6-3 | 200 | R | R | A | | Cerritos College |
| 35 | 1055** | June-Reg | Joseph Rodriguez | | 2B | 20 | 2/11/1978 | 5-9 | 183 | R | R | A | | Menardo Cara (Trujillo Alto,PR.) |
| 36 | 1085 | June-Reg | Tim Dierkes | | C | | | | 0 | | | - | | Mehlville High School (St. Louis,MO) |
| 37 | 1115 | June-Reg | Michael Kashuba | | P | | | | 0 | | | - | | Clarence Ful. (Vernon,CT) |
| 38 | 1145 | June-Reg | Clint Patton | | C | | | | 0 | | | - | | Sonora High School (La Habra,CA) |
| 39 | 1175 | June-Reg | Aaron Kirkland | | P | 19 | 3/1/1979 | 6-5 | 200 | R | R | A+ | | Lurleen B. Wallace Community College |
| 40 | 1205** | June-Reg | Adam Thomas | | P | 18 | 12/7/1979 | 6-0 | 170 | l | L | Rookie | | North Miami High School (North Miami,FL) |
| 41 | 1235 | June-Reg | Nicholas Hobbs | | OF | | | | 0 | | | - | | Chaparral High School (Las Vegas,NV) |
| 42 | 1264** | June-Reg | Geoff Comfort | | OF | 18 | 3/27/1980 | 6-0 | 210 | R | R | A+ | | Junipero Serra High School (San Mateo,CA) |
| 43 | 1292 | June-Reg | James Farris | | C | | | | 0 | | | - | | Hattiesburg High School (Hattiesburg,MS) |
| 44 | 1318** | June-Reg | Israel Torres | | P | 18 | 8/4/1979 | 6-0 | 225 | L | L | - | | Cerritos College |
| 45 | 1342 | June-Reg | Drew Parkin | | P | | | | 0 | | | - | | Aliso Niguel High School (Aliso Viejo,CA) |
| 46 | 1365** | June-Reg | Ernie Durazo | | 1B | 19 | 12/6/1978 | 5-9 | 201 | L | R | A | | Pima Community College |
| 47 | 1386** | June-Reg | Clayton McCullough | | C | 18 | 12/27/1979 | 5-10 | 180 | L | R | AAA | | J.H. Rose High School (Greenville,NC) |
| 48 | 1406 | June-Reg | Greg Pines | | C | 19 | 9/3/1978 | 6-0 | 180 | R | R | A+ | | Saddleback High School (Santa Ana,CA) |
| 49 | 1423 | June-Reg | Scott Atchison | | P | 22 | 3/29/1976 | 6-2 | 180 | R | R | MLB | 2004-2007 | Texas Christian University |
| 50 | 1439 | June-Reg | David Holliday | | P | | | | 0 | | | - | | Anderson-Shiro High School (Anderson,TX) |
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