| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 3 | 103 | June-Reg | Darryl Conyer | | OF | 18 | 12/10/1979 | 5-10 | 200 | L | L | Rookie | | Mission Bay High School (San Diego,CA) |
| 4 | 133 | June-Reg | Javier Lopez | | P | 20 | 7/11/1977 | 6-4 | 225 | L | L | MLB | 2003-2008 | University of Virginia |
| 5 | 163 | June-Reg | J.D. Closser | | C | 18 | 1/15/1980 | 5-10 | 200 | B | R | MLB | 2004-2006 | Alexandria High School (Alexandria,IN) |
| 6 | 193 | June-Reg | Brock McCarty | | OF | 18 | 10/1/1979 | 6-2 | 205 | R | R | Rookie | | Ouachita Christian School High School (Monroe,LA) |
| 7 | 223 | June-Reg | Jeffrey Pass | | P | 18 | 1/3/1980 | 6-1 | 168 | L | L | A | | New Castle High School (New Castle,IN) |
| 8 | 253 | June-Reg | Andrew Good | | P | 18 | 9/19/1979 | 6-2 | 195 | R | R | MLB | 2003-2005 | Rochester High School (Rochester Hills,MI) |
| 9 | 283** | June-Reg | Brendan Fuller | | P | 17 | 9/13/1980 | 6-1 | 205 | R | R | A | | Clearwater High School (Clearwater,FL) |
| 10 | 313 | June-Reg | Tom Kail | | OF | 18 | 7/22/1979 | 6-4 | 210 | R | R | Rookie | | Baldwin High School (Pittsburgh,PA) |
| 11 | 343 | June-Reg | Hector Cruz | | OF-3B | 45 | 4/2/1953 | 5-11 | 170 | R | R | MLB | 1973-1982 | Florida Junior College |
| 12 | 373 | June-Reg | Victor Hall | | OF | 17 | 9/16/1980 | 5-11 | 170 | L | L | AAA | | Monroe High School (Sepulveda,CA) |
| 13 | 403** | June-Reg | Brian Sager | | P | 18 | 10/30/1979 | 6-4 | 230 | R | R | A | | Branford High School (Branford,CT) |
| 14 | 433 | June-Reg | Dan Meier | | OF | 20 | 8/13/1977 | 6-0 | 201 | L | L | AAA | | Arizona State University |
| 15 | 463 | June-Reg | Chris Cervantes | | P | 19 | 2/4/1979 | 6-1 | 165 | L | L | AAA | | Pima Community College |
| 16 | 493 | June-Reg | Heath Corbett | | OF | 18 | 4/24/1980 | 6-4 | 195 | R | R | Rookie | | McMinn County High School (Athens,TN) |
| 17 | 523 | June-Reg | Lamar Sturdivant | | OF | | | | 0 | | | - | | Woodbury High School (Woodbury,NJ) |
| 18 | 553 | June-Reg | Bret Prinz | | P | 21 | 6/15/1977 | 6-3 | 185 | R | R | MLB | 2001-2007 | Phoenix College |
| 19 | 583 | June-Reg | Jeff Barndollar | | P | 21 | 4/29/1977 | 6-4 | 195 | R | R | AAA | | Saddleback College |
| 20 | 613 | June-Reg | John Egly | | 3B | 18 | 12/23/1979 | 6-4 | 190 | B | R | A | | Mountain View High School (Mountain View,MO) |
| 21 | 643 | June-Reg | Paul Giambalvo | | P | 23 | 3/17/1975 | 6-1 | 170 | R | R | Rookie | | University of South Florida |
| 22 | 673** | June-Reg | Ryan Blake | | C | 18 | 1/2/1980 | 6-1 | 205 | R | R | A+ | | Glenn High School (Kernersville,NC) |
| 23 | 703 | June-Reg | Rob Hammock | | C | 21 | 5/13/1977 | 6-0 | 190 | R | R | MLB | 2003-2008 | University of Georgia |
| 24 | 733 | June-Reg | Troy Niehaus | | P | 21 | 5/16/1977 | 6-6 | 200 | L | L | Rookie | | Eastern Michigan University |
| 25 | 763 | June-Reg | Steve Neal | | 1B | 21 | 2/14/1977 | 6-2 | 250 | L | L | AAA | | Pratt Community College |
| 26 | 793** | June-Reg | Jason Reuss | | OF | 18 | 11/2/1979 | 6-6 | 215 | R | R | A- | | Canyon High School (Anaheim,CA) |
| 27 | 823 | June-Reg | Mario Knorr | | OF | 18 | 12/4/1979 | 5-11 | 175 | L | R | Rookie | | El Capitan High School (Lakeside,CA) |
| 28 | 853 | June-Reg | Justin Santonocito | | SS | 21 | 12/15/1976 | 6-1 | 195 | L | R | A | | Mercyhurst College |
| 29 | 883 | June-Reg | Mike Koplove | | P | 21 | 8/30/1976 | 6-0 | 160 | R | R | MLB | 2001-2007 | University of Delaware |
| 30 | 913** | June-Reg | Charlie Manning | | P | 19 | 3/31/1979 | 6-2 | 180 | L | L | MLB | 2008-2008 | Polk Community College |
| 31 | 943** | June-Reg | Carl Makowsky | | P | 18 | 12/13/1979 | 6-1 | 205 | R | R | A+ | | Conroe High School (Conroe,TX) |
| 32 | 973** | June-Reg | Nick Glaser | | P | 19 | 7/12/1978 | 6-2 | 190 | R | R | A- | | Edmonds Community College |
| 33 | 1003 | June-Reg | Horace Lawrence | | P | 17 | 1/6/1981 | 5-9 | 160 | L | L | A- | | El Cerrito High School (El Cerrito,CA) |
| 34 | 1033 | June-Reg | Justin Kees | | P | 20 | 8/5/1977 | 6-1 | 190 | R | R | A+ | | Southern Illinois University |
| 35 | 1063** | June-Reg | Russ Bayer | | P | 18 | 12/19/1979 | 6-4 | 210 | L | L | A | | Naperville Central High School (Naperville,IL) |
| 36 | 1093 | June-Reg | James Rinne | | OF | 21 | 7/29/1976 | 6-3 | 215 | R | R | A+ | | University of Illinois |
| 37 | 1123 | June-Reg | Matt White | | P | | | | | | R | A+ | | Western Oregon University |
| 38 | 1153 | June-Reg | Justin Crivello | | P | 19 | 9/8/1978 | 5-8 | 170 | L | L | Rookie | | Edmonds Community College |
| 39 | 1183 | June-Reg | Kirk Bolling | | P | 21 | 4/14/1977 | 6-3 | 185 | R | R | A | | Saddleback College |
| 40 | 1213 | June-Reg | John Gouzd | | | | | | | | | College | | Fairmont High School (Fairmont,WV) |
| 41 | 1243 | June-Reg | Justin Beasley | | C | 22 | 10/13/1975 | 6-0 | 230 | | | Rookie | | Butler University |
| 42 | 1272 | June-Reg | Jody Fuller | | P | 21 | 9/12/1976 | 6-3 | 220 | R | R | AAA | | University of Tennessee |
| 43 | 1300 | June-Reg | Adam Neubart | | OF | 20 | 7/23/1977 | 5-11 | 165 | R | R | AA | | Rutgers University |
| 44 | 1325 | June-Reg | Courtney Hall | | | 19 | 2/13/1979 | 6-5 | 220 | R | R | Ind | | Edmonds Community College |
| 45 | 1350** | June-Reg | Wilton Reynolds | | OF | 18 | 3/5/1980 | 6-4 | 190 | R | R | AAA | | Monte Vista High School (Spring Valley,CA) |
| 46 | 1372** | June-Reg | Benjamin Mitchell | | P | 18 | 10/2/1979 | 6-3 | 205 | R | R | A- | | Scottsdale High School (Scottsdale,AZ) |
| 47 | 1393 | June-Reg | Cole Saben | | P | | | | 0 | | | - | | Portland Lutheran High School (Portland,OR) |
| 48 | 1413 | June-Reg | Bryon Gribbons | | P | 18 | 5/5/1980 | 6-4 | 226 | R | R | - | | Cooper City High School (Cooper City,FL) |
| 49 | 1430** | June-Reg | Joseph Bunton | | 3B | | | | 0 | | | - | | Bell High School (Bell,CA) |
| 50 | 1445 | June-Reg | Lucas Gruner | | C | | | | 0 | | | - | | Mayfair High School (Lakewood,CA) |
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