| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 23 | June-Reg | Bubba Crosby | $$ | OF | 21 | 8/11/1976 | 5-11 | 185 | L | L | MLB | 2003-2006 | Rice University |
| 2 | 66 | June-Reg | Mike Fischer | | P-SS | 21 | 12/10/1976 | 6-4 | 200 | R | R | AA | | University of South Alabama |
| 3 | 96** | June-Reg | Alex Santos | | P | 20 | 8/9/1977 | 6-1 | 201 | R | R | AAA | | University of Miami (Florida) |
| 4 | 126 | June-Reg | Eric Riggs | | P | 21 | 8/19/1976 | 6-2 | 190 | B | R | AAA | | University of Central Florida |
| 5 | 156 | June-Reg | Scott Proctor | | P | 21 | 1/2/1977 | 6-1 | 198 | R | R | MLB | 2004-2008 | Florida State University |
| 6 | 186 | June-Reg | Ryan Moskau | | 1B | 20 | 8/22/1977 | 6-3 | 210 | R | L | AA | | University of Arizona |
| 7 | 216 | June-Reg | David Ross | | C | 21 | 3/19/1977 | 6-2 | 205 | R | R | MLB | 2002-2008 | University of Florida |
| 8 | 246 | June-Reg | Thomari Story-Harden | | IF | 18 | 4/6/1980 | 6-5 | 205 | R | R | A+ | | El Cerrito High School (El Cerrito,CA) |
| 9 | 276 | June-Reg | Joel Williams | | P | 18 | 11/26/1979 | 6-1 | 190 | R | R | A- | | Yoncalla High School (Yoncalla,OR) |
| 10 | 306 | June-Reg | Lance Caraccioli | | P | 20 | 12/14/1977 | 6-4 | 190 | L | L | AAA | | Northeast Louisiana University |
| 12 | 366 | June-Reg | Juan Taylor | | P | 18 | 6/11/1980 | 6-2 | 170 | L | R | Rookie | | Louisa County High School (Mineral,VA) |
| 13 | 396** | June-Reg | Charles Thomas | | OF | 19 | 12/26/1978 | 6-0 | 190 | L | L | MLB | 2004-2005 | McLane High School (Fresno,CA) |
| 14 | 426 | June-Reg | Robert Gorr | | IF | 21 | 9/14/1976 | 6-0 | 195 | R | R | AA | | USC |
| 15 | 456 | June-Reg | Paul Avery | | P | 21 | 1/29/1977 | 5-11 | 180 | R | L | A+ | | Pepperdine University |
| 16 | 486 | June-Reg | Jim Goelz | | IF | 22 | 2/13/1976 | 5-10 | 170 | R | R | AAA | - | New York Tech |
| 17 | 516 | June-Reg | Alex Peidra | | P | | | | 0 | | | - | | Southern High School (Miami,FL) |
| 18 | 546 | June-Reg | Tony Richards | | C | | | | 0 | | | - | | North Dakota State University |
| 19 | 576 | June-Reg | Jeremy Meccage | | P | | | | | | | - | | University of Iowa |
| 20 | 606 | June-Reg | Tim Harrell | | P | 22 | 10/31/1975 | 6-4 | 215 | R | R | AA | | Liberty University |
| 21 | 636 | June-Reg | Jacob Sampson | | SS | 19 | 9/9/1978 | 5-9 | 170 | R | R | A- | | Curtis High School (University Place,WA) |
| 22 | 666 | June-Reg | Tony Gomes | | P | 20 | 9/10/1977 | 6-2 | 190 | R | R | AA | | San Joaquin Memorial High School (Fresno,CA) |
| 23 | 696 | June-Reg | Jason Moody | | P | 21 | 11/6/1976 | 5-11 | 170 | R | L | A- | | Spartanburg High School (Spartanburg,SC) |
| 24 | 726 | June-Reg | Allen Davis | | P | 22 | 10/1/1975 | 6-4 | 195 | L | L | AAA | | Northwestern University |
| 25 | 756 | June-Reg | Michael Barnsby | | P | 22 | 11/20/1975 | 6-1 | 185 | R | R | A+ | | University of Massachusetts |
| 26 | 786 | June-Reg | Matt Greer | | C | 22 | 5/18/1976 | 5-11 | 195 | R | R | A- | | Louisiana Tech University |
| 27 | 816 | June-Reg | Nick Theodorou | | 3B | 23 | 6/7/1975 | 5-11 | 182 | B | R | AAA | | UCLA |
| 28 | 846** | June-Reg | Corry Parrott | | CF | 18 | 7/4/1979 | 6-1 | 190 | R | R | Rookie | | Pasadena City College |
| 29 | 876** | June-Reg | David Baum | | P | 18 | 6/13/1980 | 6-2 | 200 | L | L | - | | Martin County High School (Stuart,FL) |
| 30 | 906** | June-Reg | Lloyd Turner | | IF | 18 | 4/11/1980 | 6-1 | 180 | R | R | AAA | | Hephzibah High School (Augusta,GA) |
| 31 | 936** | June-Reg | Paul Brown | | P | 19 | 10/11/1978 | 6-1 | 185 | L | L | A | | Citrus Junior College |
| 32 | 966** | June-Reg | Darren Heal | | | 18 | 9/5/1979 | 6-2 | 198 | B | R | Rookie | | Indian River Community College |
| 33 | 996** | June-Reg | Herman Dean | | OF | 17 | 11/25/1980 | 6-3 | 190 | R | R | A- | | Monrovia High School (Monrovia,CA) |
| 34 | 1025 | June-Reg | Carlos Claudio | | SS | | | | 0 | | | - | | Ora Wilma (Guaynabo,PR.) |
| 35 | 1056** | June-Reg | Rashad Parker | | | 18 | 9/1/1979 | 5-11 | 180 | R | R | A+ | | Crossroads School High School (Van Nuys,CA) |
| 36 | 1086 | June-Reg | Curt Borland | | | 18 | 10/13/1979 | 6-2 | 210 | R | R | A | | Centaurus High School (Broomfield,CO) |
| 37 | 1116 | June-Reg | Joshua McMillen | | OF | | | | 0 | | | - | | West Virginia University |
| 38 | 1146 | June-Reg | Joshua Berndt | | P | | | | 0 | | | - | | |
| 39 | 1176 | June-Reg | Marc-Andre Lagace | | P | | | | 0 | | | - | | Louis Riel High School (Gloucester,ON) |
| 40 | 1206 | June-Reg | Clint Hosford | | P | 17 | 8/8/1980 | 6-2 | 185 | R | R | A+ | | Carson Graham High School (North Vancouver,BC) |
| 41 | 1236 | June-Reg | Douglas Vandecaveye | | 3B | | | | 0 | | | - | | Tilbury District High School (Tilbury,ON) |
| 42 | 1265** | June-Reg | Jahseam George | | P | 19 | 5/11/1979 | 6-4 | 220 | L | L | A- | | San Jose State University |
| 43 | 1293 | June-Reg | Jorge Roman | | P | | | | 0 | | | - | | Jose de Dieg (Aguadilla,PR.) |
| 44 | 1319 | June-Reg | Edward Hart | | C | | | | 0 | | | - | | Grayson Coun. (Round Rock,TX) |
| 45 | 1343 | June-Reg | Brandon Smith | | P | 18 | 2/18/1980 | 6-3 | 196 | R | R | A | | Cypress College |
| 46 | 1366** | June-Reg | Steve Andrade | | P | 20 | 2/6/1978 | 6-1 | 200 | R | R | MLB | 2006-2006 | American Riv. (Woodland,CA) |
| 47 | 1387 | June-Reg | Henry Arocho | | OF | | | | 0 | | | - | | Benito Cerez (Aguadilla,PR) |
| 48 | 1407 | June-Reg | Chad Marchand | | P | | | | 0 | | | - | - | Lethbridge Collegiate Institute High School (Lethbridge,AB) |
| 49 | 1424 | June-Reg | Wayne Stone | | 3B | | | | 0 | | | - | | AB Miller High School (Fontana,CA) |
| 50 | 1440** | June-Reg | Blake McGinley | | P | 19 | 8/2/1978 | 6-1 | 185 | R | L | AAA | | Bakersfield High School (Bakersfield,CA) |
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