| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 17 | June-Reg | Brad Lidge | $$ | P | 21 | 12/23/1976 | 6-5 | 200 | R | R | MLB | 2002-2008 | University of Notre Dame |
| 1 | 37 | June-Reg | Mike Nannini | $$ | P | 17 | 8/9/1980 | 5-11 | 191 | R | R | AAA | | Green Valley High School (Henderson,NV) |
| 3 | 92** | June-Reg | Brad Busbin | | P | 17 | 8/29/1980 | 6-3 | 205 | R | R | A- | | Dr. Phillips High School (Orlando,FL) |
| 4 | 122** | June-Reg | Jason Van Meetren | | OF | 18 | 10/4/1979 | 6-3 | 200 | R | R | A+ | | |
| 5 | 152 | June-Reg | Scott Barrett | | P | 19 | 11/18/1978 | 5-10 | 175 | L | L | A- | | San Jacinto College-North |
| 6 | 182 | June-Reg | Dave Matranga | | IF | 21 | 1/8/1977 | 6-0 | 163 | R | R | MLB | 2003-2005 | Pepperdine University |
| 7 | 212 | June-Reg | John Buck | | C | 17 | 7/7/1980 | 6-3 | 210 | R | R | MLB | 2004-2008 | Taylorsville High School (Salt Lake City,UT) |
| 8 | 242 | June-Reg | Jesse Joyce | | 3B | 22 | 5/12/1976 | 5-10 | 185 | R | R | A+ | | Cal State Los Angeles |
| 9 | 272 | June-Reg | Morgan Ensberg | | 3B | 22 | 8/26/1975 | 6-2 | 210 | R | R | MLB | 2000-2008 | USC |
| 10 | 302 | June-Reg | Keith Ginter | | 2B | 22 | 5/5/1976 | 5-10 | 190 | R | R | MLB | 2000-2005 | Texas Tech University |
| 11 | 332** | June-Reg | Kevin Jordan | | | 21 | 9/7/1976 | 6-1 | 190 | R | R | A+ | | Texas Tech University |
| 12 | 362 | June-Reg | Jeremy Ryan | | P | 20 | 1/18/1978 | 6-4 | 195 | R | R | A | | Maple Woods High School (Gladstone,MO) |
| 13 | 392 | June-Reg | Doug Sessions | | P | 21 | 9/28/1976 | 6-1 | 209 | R | R | AAA | | Armstrong High School (Savannah,GA) |
| 14 | 422** | June-Reg | Jacob Baker | | | 22 | 6/18/1976 | 6-3 | 220 | R | R | A | | Rice University |
| 15 | 452 | June-Reg | Chuck Carter | | 1B | | | | 0 | | | - | | Baylor University |
| 16 | 482 | June-Reg | Derek Nicholson | | OF | 22 | 6/17/1976 | 6-0 | 200 | L | R | AAA | | University of Florida |
| 17 | 512 | June-Reg | Colin Porter | | OF | 22 | 11/23/1975 | 6-2 | 200 | L | L | MLB | 2003-2004 | University of Arizona |
| 18 | 542 | June-Reg | Rich Terwilliger | | P | 19 | 9/7/1978 | 6-3 | 180 | R | R | A- | | Finger Lakes High School (Corning,NY) |
| 19 | 572 | June-Reg | Byron Wilkerson | | P | 21 | 8/15/1976 | 6-3 | 205 | R | R | A+ | | University of Mary Hardin-Baylor |
| 20 | 602 | June-Reg | Anthony Ramirez | | 3B | 17 | 7/21/1980 | 6-1 | 200 | L | R | Rookie | | Carson High School (Carson,CA) |
| 21 | 632** | June-Reg | Brian Messer | | P | 21 | 4/6/1977 | 6-4 | 208 | R | R | A | | University of New Mexico |
| 22 | 662 | June-Reg | Garrett Zyskowski | | P | 22 | 9/3/1975 | 6-1 | 185 | L | L | A | | West Virginia University |
| 23 | 692 | June-Reg | Brandon Smith | | P | 22 | 4/10/1976 | 6-1 | 205 | R | R | A | | Northeast Louisiana University |
| 24 | 722 | June-Reg | Joshua Dimmick | | C | 22 | 5/5/1976 | 6-3 | 225 | B | R | A | | University of Kansas |
| 25 | 752 | June-Reg | Jacob Whitney | | P | 22 | 5/23/1976 | 6-2 | 220 | L | L | A+ | | Iowa State University |
| 26 | 782 | June-Reg | Robert Carrillo | | 1B | 19 | 5/9/1979 | 6-6 | 260 | R | R | A- | | Montgomery High School (San Diego,CA) |
| 27 | 812 | June-Reg | Bobby Burns | | | | | | | | | College | | Bingham High School (South Jordan,UT) |
| 28 | 842** | June-Reg | Chris Sheffield | | P | 18 | 12/13/1979 | 6-3 | 215 | R | R | A- | | Stephen F. Austin University |
| 29 | 872 | June-Reg | Brandon Buckley | | C | 21 | 1/25/1977 | 6-2 | 205 | R | R | AA | | Texas Tech University |
| 30 | 902** | June-Reg | Jordan Hunt | | P | 19 | 2/12/1979 | 6-4 | 195 | R | R | Rookie | | |
| 31 | 932** | June-Reg | Alex Dvorsky | | C | 18 | 8/8/1979 | 6-2 | 195 | R | R | A | | Marion High School (Marion,LA) |
| 32 | 962** | June-Reg | Bernie Gonzalez | | OF | 18 | 5/10/1980 | 6-2 | 205 | R | R | A+ | | |
| 33 | 992 | June-Reg | Gavin Wright | | OF | 19 | 5/6/1979 | 6-2 | 175 | R | R | AA | | Blinn College |
| 35 | 1052** | June-Reg | Brett Kay | | C | 18 | 10/31/1979 | 6-1 | 190 | R | R | A+ | | Mater Dei High School (Santa Ana,CA) |
| 36 | 1082 | June-Reg | Benson Barrera | | | | | | | | | College | | Skyview High School (Nampa,ID) |
| 37 | 1112** | June-Reg | Jeremy Frost | | C | 18 | 11/19/1979 | 6-3 | 210 | R | R | AA | | Oviedo High School (Oviedo,FL) |
| 38 | 1142** | June-Reg | Bryan Edwards | | P | 18 | 8/21/1979 | 5-11 | 170 | R | R | AA | | Northeast Texas Community College |
| 39 | 1172 | June-Reg | Roberto Zaldivar | | | | | | | | | College | | exists High School (-) |
| 40 | 1202** | June-Reg | Ray Leyba | | P | | | | 0 | | | - | | Choctaw High School (Choctaw,OK) |
| 41 | 1232 | June-Reg | Mike McHugh | | P | 25 | 4/9/1973 | 5-11 | 180 | L | L | A+ | | Helix Charter High School (La Mesa,CA) |
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