| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 5 | June-Reg | Vernon Wells | $$ | OF | 18 | 12/8/1978 | 6-1 | 210 | R | R | MLB | 1999-2008 | Bowie High School (Arlington,TX) |
| 3 | 89 | June-Reg | Billy Brown | | OF | 21 | 3/9/1976 | 6-0 | 190 | R | R | A+ | | Florida Atlantic University |
| 4 | 119 | June-Reg | Woody Heath | | P | 20 | 8/19/1976 | 6-0 | 170 | R | R | A+ | | Green River Community College |
| 5 | 149 | June-Reg | Michael Young | | SS | 20 | 10/19/1976 | 6-1 | 175 | R | R | MLB | 2000-2008 | University of California-Santa Barbara |
| 6 | 179 | June-Reg | Paul Chiaffredo | | C | 21 | 5/30/1976 | 6-2 | 206 | R | R | AAA | | Santa Clara University |
| 7 | 209 | June-Reg | Matt Mcclellan | | P | 20 | 8/13/1976 | 6-7 | 220 | R | R | AAA | | Oakland University |
| 8 | 239 | June-Reg | Joe Casey | | P | 18 | 1/25/1979 | 6-0 | 185 | R | R | AAA | | Twin Valley High School (Elverson,PA) |
| 9 | 269 | June-Reg | Carlos Ortiz | | C | 17 | 8/7/1979 | 6-4 | 225 | R | R | Rookie | | Loara High School (Anaheim,CA) |
| 10 | 299** | June-Reg | Matt Bowser | | 1B | 18 | 3/8/1979 | 6-3 | 205 | L | L | AA | - | Tarpon Springs High School (Tarpon Springs,FL) |
| 11 | 329 | June-Reg | Ron Bost | | P | 17 | 7/24/1979 | 6-2 | 175 | L | L | A- | | |
| 12 | 359 | June-Reg | Randy Eversgerd | | p | 20 | 8/28/1976 | 6-0 | 180 | R | R | A+ | | Eastern Illinois University |
| 13 | 389 | June-Reg | Travis Hubbel | | p | 18 | 6/27/1979 | 6-0 | 190 | R | R | AA | | East Glen Composite High School (Edmonton,AB) |
| 14 | 419** | June-Reg | Cameron Reimers | | p | 18 | 9/15/1978 | 6-5 | 200 | R | R | AAA | | Sentinel High School (Missoula,MT) |
| 15 | 449 | June-Reg | Colin Brackeen | | p | 22 | 3/8/1975 | 6-0 | 200 | L | L | A+ | | St. Olaf College |
| 16 | 479 | June-Reg | Dustin Seale | | p | 19 | 12/2/1977 | 6-1 | 195 | L | L | AAA | | Safford High School (Safford,AZ) |
| 17 | 509 | June-Reg | Dan Barnett | | SS | 17 | 3/31/1980 | 5-10 | 180 | R | R | A+ | | Linfield College |
| 18 | 539 | June-Reg | Matt Weimer | | p | 22 | 11/21/1974 | 6-2 | 190 | R | R | AA | | Penn State University |
| 19 | 569 | June-Reg | Erik Lorenz | | p | | | | | | | - | | University of Wisconsin, Whitewater |
| 20 | 599 | June-Reg | Mark Hendrickson | | p | 23 | 6/23/1974 | 6-9 | 230 | L | L | MLB | 2002-2008 | |
| 21 | 629 | June-Reg | David Huggins | | p | 21 | 12/19/1975 | 6-5 | 190 | R | R | AA | | McNeese State University |
| 22 | 659 | June-Reg | John Sneed | | p | 21 | 6/30/1976 | 6-7 | 250 | L | R | AAA | | Texas A&M University |
| 23 | 689 | June-Reg | Derek DeVaughan | | p | | | | | | | - | | Seminole Junior College |
| 24 | 719 | June-Reg | Anthony Salley | | p | 21 | 9/23/1975 | 6-0 | 185 | L | L | A | | Wofford College |
| 25 | 749 | June-Reg | Perfecto Gaud | | p | 18 | 12/4/1978 | 6-4 | 210 | L | L | Rookie | | Luis Munoz Marin High School (Anasco,PR) |
| 26 | 779 | June-Reg | Floyd Mack | | OF | | | | | | | - | | Mays High School (Atlanta,GA) |
| 27 | 809 | June-Reg | Fred Smith | | OF | 19 | 5/27/1978 | 6-2 | 172 | R | R | A- | | Volunteer State Community College |
| 28 | 839 | June-Reg | Andrew Barrett | | SS | 17 | 7/12/1979 | 6-0 | 175 | L | R | Rookie | | Stadium High School (Tacoma,WA) |
| 29 | 869 | June-Reg | Juan Santos | | C-1B | 19 | 3/14/1978 | 6-3 | 186 | B | R | A+ | | Florida Junior College |
| 30 | 899 | June-Reg | Tim Lacefield | | p | 21 | 9/8/1975 | 6-3 | 175 | R | R | A- | | Harding University |
| 31 | 929 | June-Reg | Jermaine Davis | | OF | 18 | 9/9/1978 | 6-4 | 230 | R | R | A- | | Chesnee High School (Chesnee,SC) |
| 32 | 959** | June-Reg | Sean Green | | p | 18 | 4/20/1979 | 6-6 | 230 | R | R | MLB | 2006-2008 | Male High School (Louisville,KY) |
| 33 | 989 | June-Reg | Taylor Smith | | p | 18 | 12/15/1978 | 6-3 | 195 | R | R | A+ | | Green Valley High School (Henderson,NV) |
| 34 | 1019 | June-Reg | Jamie Jenkins | | p | | | | | | | - | | Hill High School (Miramichi,NB) |
| 35 | 1049 | June-Reg | Josh Stevens | | p | 18 | 6/6/1979 | 6-4 | 200 | R | R | AAA | | Jurupa Valley High School (Mira Loma,CA) |
| 36 | 1079 | June-Reg | Simon Stoner | | p | | | | | | | College | | Duchess Park High School (Prince George,BC) |
| 37 | 1109 | June-Reg | Jason Burkley | | C-3B | | | | | | | - | | Lexington Catholic High School (Lexington,KY) |
| 38 | 1139 | June-Reg | Chivas Clark | | Of | 18 | 11/25/1978 | 6-2 | 185 | L | L | A | | Northeast High School (Macon,GA) |
| 39 | 1169** | June-Reg | Matt Easterday | | 2B | 18 | 5/3/1979 | 6-1 | 188 | R | R | AAA | | Newton High School (Covington,GA) |
| 40 | 1199 | June-Reg | Michael Ramsey | | of | | | | | | | - | | Columbus High School (Columbus,GA) |
| 41 | 1229 | June-Reg | Patrick Versluis | | p | | | | | | | - | | Saddleback College |
| 42 | 1256** | June-Reg | Andrew Beattie | | SS | 19 | 2/28/1978 | 5-10 | 170 | B | R | AAA | | Pasco-Hernando Community College |
| 43 | 1280 | June-Reg | Orlando Hudson | | SS | 19 | 12/12/1977 | 6-0 | 185 | B | R | MLB | 2002-2008 | Spartanburg Methodist College |
| 44 | 1303 | June-Reg | Todd Thompson | | p | | | | | | | - | | Indian Hills Community College-Centerville |
| 45 | 1324 | June-Reg | Brandon Long | | p | | | | | | | - | | Central Alabama Community College |
| 46 | 1344** | June-Reg | Brad Hawpe | | p | 18 | 6/22/1979 | 6-3 | 210 | L | L | MLB | 2004-2008 | Boswell High School (Fort Worth,TX) |
| 47 | 1363 | June-Reg | Jesus Lebron | | of | 19 | 7/25/1977 | 5-11 | 185 | R | R | A- | | |
| 48 | 1381 | June-Reg | David Siboda | | p | | | | | | | - | | Southeast Missouri State University |
| 49 | 1398 | June-Reg | Anthony Novelli | | p | | | | | | | - | | West Valley College |
| 50 | 1415 | June-Reg | Michael Albert | | SS | | | | | | | - | | Grossmont College |
| 51 | 1430 | June-Reg | Chad Schmidt | | of | | | | | | | - | | Blinn College |
| 52 | 1444** | June-Reg | Chad Qualls | | p | 18 | 8/17/1978 | 6-5 | 205 | R | R | MLB | 2004-2008 | Los Angeles Harbor Community College |
| 53 | 1458** | June-Reg | Jeff Nettles | | 3B | 18 | 8/20/1978 | 6-0 | 200 | R | R | AAA | | Palomar College |
| 54 | 1471 | June-Reg | Craig Lariz | | 1B | | | | | | | - | | Indian River Community College |
| 55 | 1482 | June-Reg | Rashard Casey | | of | | | | | | | - | | Penn State University |
| 56 | 1493 | June-Reg | Arlyn Dozier | | of | | | | | | | - | | Vermillion Catholic High School (Abbeville,LA) |
| 57 | 1504 | June-Reg | Travis Cole | | p | | | | | | | - | | Lakeridge High School (Lake Oswego,OR) |
| 58 | 1515** | June-Reg | Billy Traber | | p | 17 | 9/18/1979 | 6-5 | 205 | L | L | MLB | 2003-2008 | El Segundo High School (El Segundo,CA) |
| 59 | 1526 | June-Reg | Michael Willetts | | p | | | | | | | - | | Abraham Baldwin College |
| 60 | 1535 | June-Reg | Brandon Tellis | | of | | | | | | | - | | Charleston High School (Charleston,MS) |
| 61 | 1542 | June-Reg | Gary Peete | | of | | | | | | | - | | Itawamba Community College |
| 62 | 1547 | June-Reg | Casey Burrill | | 1B | | | | | | | Rookie | | Cypress College |
| 63 | 1552 | June-Reg | Charles Lawrence | | of | | | | | | | - | | Lakeside High School (Atlanta,GA) |
| 64 | 1557 | June-Reg | Jeremiah Barnes | | p | | | | | | | - | | Downey High School (Downey,CA) |
| 65 | 1562 | June-Reg | William Wagner | | of | | | | | | | - | | Elmore County High School (Eclectic,AL) |
| 66 | 1567 | June-Reg | Cameron Newitt | | p | | | | | | | - | | Northwest Shoals Community College |
| 67 | 1572 | June-Reg | Dave Steffler | | p | | | | | | | - | | Winthrop University |
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