| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 2 | 51 | June-Reg | Brian Falkenborg | | P | 18 | 1/18/1978 | 6-6 | 195 | R | R | MLB | 1999-2007 | Redmond High School (Redmond,WA) |
| 3 | 81 | June-Reg | Daren Hooper | | OF | 19 | 5/15/1977 | 6-1 | 230 | R | R | A | | University of Arizona |
| 4 | 111 | June-Reg | Mark Seaver | | P | 21 | 4/6/1975 | 6-8 | 240 | R | R | A+ | | Wake Forest University |
| 5 | 141 | June-Reg | Franky Figueroa | | 1B-OF | 19 | 2/9/1977 | 6-6 | 245 | R | R | AAA | | Florida Bible Christian High School (Miramar,FL) |
| 6 | 171 | June-Reg | Josh McNatt | | P | 18 | 7/23/1977 | 6-4 | 200 | B | L | AA | | Motlow State Community College |
| 7 | 201** | June-Reg | Brent Schoening | | P | 18 | 4/7/1978 | 6-1 | 195 | R | R | AAA | | Columbus High School (Columbus,GA) |
| 8 | 231 | June-Reg | Chad Paronto | | P | 20 | 7/28/1975 | 6-5 | 225 | R | R | MLB | 2001-2007 | University of Massachusetts |
| 9 | 261 | June-Reg | Luis Ramirez | | 1B | 17 | 9/26/1978 | 6-3 | 180 | R | R | Rookie | | |
| 10 | 291 | June-Reg | Luis Matos | | OF | 17 | 10/30/1978 | 6-0 | 179 | R | R | MLB | 2000-2006 | |
| 11 | 321** | June-Reg | Bruce Stanley | | P | | | | | | | - | | Ball State University |
| 12 | 351 | June-Reg | Simieon Theodile | | p | 19 | 4/15/1977 | 6-2 | 195 | R | R | A | | Acadiana High School (Lafayette,LA) |
| 13 | 381 | June-Reg | Augie Ojeda | | SS | 21 | 12/20/1974 | 5-8 | 165 | B | R | MLB | 2000-2008 | University of Tennessee |
| 14 | 411 | June-Reg | Ryan Kohlmeier | | p | 19 | 6/25/1977 | 6-2 | 223 | R | R | MLB | 2000-2001 | Butler County Community College |
| 15 | 441 | June-Reg | Josh Towers | | p | 19 | 2/26/1977 | 6-1 | 165 | R | R | MLB | 2001-2007 | Oxnard College |
| 16 | 471 | June-Reg | Josh Morris | | SS | | | | | | | - | | Motlow State Community College |
| 17 | 501 | June-Reg | Tim DeCinces | | C | 22 | 4/26/1974 | 6-2 | 190 | L | R | AAA | | UCLA |
| 18 | 531 | June-Reg | Andrew Cheek | | p | 18 | 5/28/1978 | 6-2 | 200 | R | L | A+ | | Beaver Creak High School (West Jefferson,NC) |
| 19 | 561 | June-Reg | Gabe Crecion | | p | | | | | | | - | | Chaminade Prep High School (Chatsworth,CA) |
| 20 | 591 | June-Reg | Ashanti Davison | | OF | 17 | 10/31/1978 | 5-10 | 170 | R | R | A+ | | St. Mary's High School (Stockton,CA) |
| 21 | 621 | June-Reg | Gabe Molina | | p | 21 | 5/3/1975 | 6-1 | 220 | R | R | MLB | 1999-2003 | Arizona State University |
| 22 | 651** | June-Reg | Mike MacDougal | | p | 19 | 3/5/1977 | 6-4 | 195 | R | R | MLB | 2001-2008 | Mesa High School (Mesa,AZ) |
| 23 | 681 | June-Reg | Jesse Perez | | SS | 17 | 7/19/1978 | 6-4 | 175 | B | R | Rookie | | |
| 24 | 711 | June-Reg | Jay Gehrke | | p | 18 | 11/1/1977 | 6-6 | 225 | R | R | A+ | | North High School (Fargo,ND) |
| 25 | 741 | June-Reg | John Parrish | | p | 18 | 11/26/1977 | 5-11 | 181 | L | L | MLB | 2000-2007 | McCaskey High School (Lancaster,PA) |
| 26 | 771 | June-Reg | Maleke Fowler | | OF | 20 | 8/11/1975 | 5-11 | 180 | R | R | A+ | | Nicholls State University |
| 27 | 801 | June-Reg | Robert Baker | | p | | | | | | | - | | Westwood High School (Austin,TX) |
| 28 | 831** | June-Reg | Cordell Lindsey | | 3B | 18 | 3/8/1978 | 6-1 | 190 | R | R | A | | North Shore High School (Houston,TX) |
| 29 | 861 | June-Reg | Jason Johnson | | p | 22 | 10/27/1973 | 6-6 | 235 | R | R | MLB | 1997-2006 | Sacred Heart Academy High School (Winn,MI) |
| 30 | 891 | June-Reg | Johnny Morales | | p | 19 | 6/24/1977 | 6-4 | 205 | L | L | Rookie | | Central Arizona College |
| 31 | 921 | June-Reg | Jeff Phipps | | p | 21 | 2/5/1975 | 6-8 | 225 | R | R | Rookie | | San Joaquin Delta College |
| 32 | 951 | June-Reg | Todd Morgan | | OF | 18 | 10/8/1977 | 6-1 | 185 | R | R | Rookie | | Deerfield Beach High School (Deerfield Beach,FL) |
| 33 | 981 | June-Reg | Ryan Minor | | 3B-1b | 22 | 1/5/1974 | 6-7 | 245 | R | R | MLB | 1998-2001 | University of Oklahoma |
| 34 | 1011 | June-Reg | DeShawn Ziths | | Of | | | | | | | Rookie | | Columbia Greene Community College |
| 35 | 1041 | June-Reg | Jeremiah Johnson | | p | 18 | 5/6/1978 | 6-1 | 185 | L | L | A- | | Kellogg Community College |
| 36 | 1071 | June-Reg | Jaime Escalante | | C | 19 | 4/5/1977 | 6-2 | 210 | B | R | AA | | Hagerstown Community College |
| 37 | 1101 | June-Reg | Craig Ratliff | | p | 18 | 1/19/1978 | 6-7 | 215 | R | R | Rookie | | Paintsville High School (Paintsville,KY) |
| 38 | 1131 | June-Reg | Randall Benge | | p | | | | | | | - | | Fort Vancouver High School (Vancouver,WA) |
| 39 | 1161 | June-Reg | Eric Drew | | p | | | | | | | - | | Montello High School (Montello,WI) |
| 40 | 1191** | June-Reg | Ben Christensen | | p | 18 | 2/7/1978 | 6-4 | 205 | R | R | AA | | Goddard High School (Goddard,KS) |
| 41 | 1220 | June-Reg | Vanshan Renfroe | | SS | | | | | | | - | | McGavock High School (Nashville,TN) |
| 42 | 1248 | June-Reg | Michael Kirkpatrick | | of | 18 | 11/12/1977 | 6-0 | 180 | L | L | A+ | | St. Elizabeth High School (Wilmington,DE) |
| 43 | 1275 | June-Reg | Tyson Martinez | | p | | | | | | | - | | Fort Madison High School (Fort Madison,IA) |
| 44 | 1301 | June-Reg | Daniel Allen | | of | | | | | | | - | | Perry High School (Perry,OK) |
| 45 | 1327 | June-Reg | Josh Taylor | | SS | | | | | | | - | | Seminole Junior College |
| 46 | 1352 | June-Reg | Sean Gilchrist | | of | | | | | | | - | | Bigfork High School (Bigfork,MT) |
| 47 | 1376 | June-Reg | Chad Anderson | | of | | | | | | | - | | Bigfork High School (Bigfork,MT) |
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