| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 4 | June-Reg | Kerry Wood | $$ | P | 18 | 6/16/1977 | 6-5 | 230 | R | R | MLB | 1998-2008 | Grand Prairie High School (Grand Prairie,TX) |
| 2 | 34 | June-Reg | Brian McNichol | $$ | P | 21 | 5/20/1974 | 6-5 | 225 | L | L | MLB | 1999-1999 | James Madison University |
| 3 | 63 | June-Reg | Jeff Yoder | | P | 19 | 2/16/1976 | 6-2 | 210 | L | R | AA | | Pottsville Area High School (Pottsville,PA) |
| 4 | 91** | June-Reg | Adam Everett | | SS | 18 | 2/2/1977 | 6-0 | 156 | R | R | MLB | 2001-2008 | Harrison High School (Kennesaw,GA) |
| 5 | 119 | June-Reg | Ismael Villegas | | P | 18 | 8/12/1976 | 6-0 | 188 | R | R | MLB | 2000-2000 | |
| 6 | 147 | June-Reg | Tony Ellison | | OF | 20 | 7/12/1974 | 6-0 | 195 | R | R | A | | North Carolina State University |
| 7 | 175 | June-Reg | Dorian Speed | | OF | 21 | 3/1/1974 | 6-3 | 205 | R | R | AA | | Florida International University |
| 8 | 203 | June-Reg | Denny Bair | | P | 20 | 11/17/1974 | 6-5 | 210 | L | R | A+ | | Northeast Louisiana University |
| 9 | 231 | June-Reg | Chad Ricketts | | P | 20 | 2/12/1975 | 6-5 | 225 | R | R | AAA | | Polk Community College |
| 10 | 259 | June-Reg | Kasey Pressley | | 1B | 18 | 9/5/1976 | 6-4 | 220 | L | R | A- | | Dr. Phillips High School (Orlando,FL) |
| 11 | 287 | June-Reg | Matt Hammons | | P | 18 | 4/9/1977 | 6-3 | 205 | R | R | AA | | Mission Bay High School (San Diego,CA) |
| 12 | 315 | June-Reg | Barry Markey | | p | 19 | 7/20/1975 | 6-5 | 240 | R | R | A+ | | St. Petersburg High School (St. Petersburg,FL) |
| 13 | 343 | June-Reg | Terry Joseph | | OF | 21 | 11/20/1973 | 5-10 | 190 | R | R | AA | | New Mexico State University |
| 14 | 371 | June-Reg | Don Kinnie | | OF | 21 | 10/4/1973 | 6-2 | 185 | R | R | A | | Livingston University |
| 15 | 399 | June-Reg | Kris Stading | | p | 18 | 12/24/1976 | 6-7 | 235 | L | L | Rookie | | Browne High School (Phoenix,AZ) |
| 16 | 427 | June-Reg | Brian Conley | | SS-2B | 20 | 12/5/1974 | 510 | 175 | R | R | A | | Volunteer State Community College |
| 17 | 455 | June-Reg | Chris Moller | | 1B | | | | | | | - | | University of Alabama |
| 18 | 483 | June-Reg | Jerry Connell | | OF | 17 | 7/17/1977 | 6-2 | 200 | R | R | A+ | | Colonia High School (Colonia,NJ) |
| 19 | 511 | June-Reg | Buck Gordon | | C | 20 | 9/29/1974 | 6-1 | 220 | R | R | A- | | Bridgewater College (Virginia) |
| 20 | 539 | June-Reg | Chris Booker | | p | 18 | 12/9/1976 | 6-7 | 230 | R | R | MLB | 2005-2007 | Monroe County High School (Monroeville,AL) |
| 21 | 567 | June-Reg | Brandon Hammack | | p | 22 | 3/5/1973 | 6-5 | 240 | R | R | AA | | University of Texas-San Antonio |
| 22 | 595 | June-Reg | Andrew Mallory | | p | 18 | 9/25/1976 | 6-2 | 160 | R | R | A | | Dixie Hollins High School (St. Petersburg,FL) |
| 23 | 623 | June-Reg | Jim Putko | | 1B | | | | | | | A- | | University of Akron |
| 24 | 651 | June-Reg | Kevin Bentley | | OF | 22 | 9/21/1972 | 6-2 | 210 | R | R | A+ | | University of Southern Mississippi |
| 25 | 679** | June-Reg | Dax Norris | | C | 22 | 1/14/1973 | 5-10 | 190 | R | R | AAA | | University of Alabama |
| 26 | 707 | June-Reg | Brian Greene | | p | 21 | 11/30/1973 | 6-2 | 200 | R | R | A+ | | Indiana University |
| 27 | 735 | June-Reg | Tim Mosley | | p | 20 | 10/16/1974 | 6-0 | 180 | R | R | A+ | | University of Arkansas |
| 28 | 763 | June-Reg | Scott Vieira | | C | 21 | 8/17/1973 | 5-11 | 185 | R | R | AAA | | University of Tennessee |
| 29 | 791 | June-Reg | Ashanti McDonald | | SS-OF | 22 | 4/25/1973 | 6-0 | 185 | L | R | A | | Olivet Nazarene University (Ill.) |
| 30 | 819 | June-Reg | John McNeese | | p | 23 | 11/25/1971 | 6-0 | 180 | R | L | A+ | | University of Mississippi |
| 31 | 847 | June-Reg | Ron Licciardi | | p | 19 | 3/26/1976 | 6-2 | 190 | L | L | A+ | | University of Connecticut-Avery Point |
| 32 | 875 | June-Reg | Tom Maleski | | 3B-C | 17 | 12/23/1977 | 6-0 | 200 | R | R | A | | University of Houston |
| 33 | 903 | June-Reg | Jason Martino | | p | | | | | | | - | | Voorhees High School (Glen Gardner,NJ) |
| 34 | 931 | June-Reg | Ryan Seidel | | Of | 22 | 5/21/1973 | 6-0 | 180 | R | R | A+ | | Vanguard University of Southern California |
| 35 | 959 | June-Reg | Chris Humpert | | Of | | | | | | | - | | Arcadia High School (Arcadia,CA) |
| 36 | 987 | June-Reg | Robert Kern | | Of | | | | | | | - | | Central High School (Cape Girardeau,MO) |
| 37 | 1015** | June-Reg | Mark Taylor | | p | 20 | 10/30/1974 | 6-3 | 185 | L | L | A | | Rice University |
| 38 | 1043 | June-Reg | Casey Burns | | p | | | | | | | - | | Hopewell Valley Central High School (Pennington,NJ) |
| 39 | 1071** | June-Reg | Greg Strickland | | Of | 19 | 11/8/1975 | 5-10 | 170 | L | L | A | | Volunteer State Community College |
| 40 | 1099 | June-Reg | Brandon Ward | | p | 19 | 1/21/1976 | 6-5 | 170 | R | R | A | | Cerro Coso Community College |
| 41 | 1127 | June-Reg | Dan Mooney | | of | 18 | 2/14/1977 | 6-1 | 200 | R | R | AA | | Monsignor Donovan High School (Toms River,NJ) |
| 42 | 1155 | June-Reg | Michael Smosna | | p | | | | | | | - | | Burroughs High School (Ridgecrest,CA) |
| 43 | 1183 | June-Reg | Dave Phillips | | 2B | | | | | | | - | | Gloucester County College |
| 44 | 1211 | June-Reg | David Kelly | | p | | | | | | | - | | Leon High School (Tallahassee,FL) |
| 45 | 1239** | June-Reg | Tim Currens | | of | 19 | 10/2/1975 | 6-4 | 195 | L | R | A+ | | Volunteer State Community College |
| 46 | 1264 | June-Reg | Lance Haver | | C | 18 | 12/17/1976 | 6-1 | 220 | R | R | Rookie | | Moralla High School (Moralla,OR) |
| 47 | 1288 | June-Reg | Mickey Perez | | 2B | | | | | | | A+ | | University of Texas-San Antonio |
| 48 | 1311 | June-Reg | Brett Cornwell | | p | | | | | | | - | | Hobbs High School (Hobbs,NM) |
| 49 | 1333 | June-Reg | Jerry Zaffis | | p | | | | | | | - | | Eustis High School (Eustis,FL) |
| 50 | 1355 | June-Reg | Aaron Anthony | | 3B | | | | | | | - | | Middle Georgia College |
| 51 | 1376 | June-Reg | Chris Grubbs | | C | 19 | 12/27/1975 | 6-3 | 195 | R | R | A | | West Orange High School (Winter Garden,FL) |
| 52 | 1395** | June-Reg | Jack Koch | | p | 18 | 8/29/1976 | 6-3 | 220 | R | R | A- | | Miami-Dade College |
| 53 | 1414 | June-Reg | John Ogden | | C | | | | | | | - | | Palm Beach Community College |
| 54 | 1433 | June-Reg | Arturo Mats | | SS-2B | | | | | | | - | | New Mexico Junior College |
| 55 | 1451 | June-Reg | Justin Speier | | C | 21 | 11/6/1973 | 6-4 | 205 | R | R | MLB | 1998-2008 | Nicholls State University |
| 56 | 1468 | June-Reg | Scott Stephens | | p | | | | | | | - | | Manatee Community College |
| 57 | 1483 | June-Reg | Steven Bechard | | p | | | | | | | - | | Oneida High School (Oneida,NY) |
| 58 | 1497 | June-Reg | Seth Spiken | | C | | | | | | | - | | Blinn College |
| 59 | 1511 | June-Reg | Bobby Sprague | | of | | | | | | | - | | Queen Of Peace High School (North Arlington,NJ) |
| 60 | 1524 | June-Reg | Ryan Fuller | | p | | | | | | | - | | Monroe Community College |
| 61 | 1534 | June-Reg | Kris Williams | | p | 18 | 9/28/1976 | 6-0 | 195 | R | R | A- | | Westfield High School (Westfield,NJ) |
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